Wall clock time and date at job start Thu Apr 9 2020 14:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47210 * 2 1 4 4 C 1.52997 * 109.47128 * 239.99480 * 2 1 3 5 5 O 1.42906 * 109.46981 * 65.00042 * 4 2 1 6 6 C 1.35676 * 116.99944 * 180.02562 * 5 4 2 7 7 C 1.39315 * 119.81288 * 180.02562 * 6 5 4 8 8 C 1.36437 * 120.17719 * 180.25267 * 7 6 5 9 9 C 1.40835 * 119.81743 * 359.45946 * 8 7 6 10 10 C 1.41213 * 120.17873 * 180.25416 * 9 8 7 11 11 H 1.08001 * 119.99622 * 210.29255 * 10 9 8 12 12 C 1.39886 * 120.00219 * 30.29732 * 10 9 8 13 13 N 1.30874 * 120.00156 * 11.13645 * 12 10 9 14 14 Si 1.86800 * 119.99950 * 191.13853 * 12 10 9 15 15 H 1.48505 * 109.47301 * 59.99833 * 14 12 10 16 16 H 1.48498 * 109.47298 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47171 * 300.00014 * 14 12 10 18 18 C 1.40836 * 119.63727 * 0.53270 * 9 8 7 19 19 C 1.36433 * 119.81196 * 359.74234 * 18 9 8 20 20 C 1.52998 * 109.47368 * 119.99679 * 2 1 3 21 21 C 1.53000 * 109.47157 * 293.10532 * 20 2 1 22 22 C 1.53001 * 109.47188 * 77.84315 * 21 20 2 23 23 C 1.53008 * 109.47251 * 197.84291 * 21 20 2 24 24 C 1.53002 * 109.47115 * 317.84333 * 21 20 2 25 25 H 1.09006 * 109.46807 * 201.83846 * 1 2 3 26 26 H 1.08998 * 109.47321 * 321.83133 * 1 2 3 27 27 H 1.08989 * 109.47151 * 81.83730 * 1 2 3 28 28 H 1.08999 * 109.47256 * 304.99806 * 4 2 1 29 29 H 1.09004 * 109.47084 * 184.99423 * 4 2 1 30 30 H 1.07998 * 119.90943 * 359.97438 * 7 6 5 31 31 H 1.08010 * 120.08926 * 179.70374 * 8 7 6 32 32 H 0.97005 * 120.00292 * 180.02562 * 13 12 10 33 33 H 1.07995 * 120.09075 * 179.71035 * 18 9 8 34 34 H 1.07996 * 119.90959 * 179.97438 * 19 18 9 35 35 H 1.09007 * 109.47572 * 53.10205 * 20 2 1 36 36 H 1.09002 * 109.47603 * 173.10590 * 20 2 1 37 37 H 1.09005 * 109.46587 * 63.04276 * 22 21 20 38 38 H 1.08997 * 109.46919 * 183.03729 * 22 21 20 39 39 H 1.08994 * 109.47323 * 303.03972 * 22 21 20 40 40 H 1.09002 * 109.46631 * 60.00265 * 23 21 20 41 41 H 1.09002 * 109.46916 * 179.97438 * 23 21 20 42 42 H 1.08997 * 109.46800 * 300.00162 * 23 21 20 43 43 H 1.09002 * 109.46828 * 60.00335 * 24 21 20 44 44 H 1.08997 * 109.47197 * 180.02562 * 24 21 20 45 45 H 1.08994 * 109.46926 * 300.00114 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6619 0.0166 -2.4131 6 6 2.0390 -0.4908 -3.6135 7 6 1.7019 0.1813 -4.7863 8 6 2.0728 -0.3249 -5.9978 9 6 2.8082 -1.5244 -6.0600 10 6 3.2007 -2.0524 -7.3096 11 1 3.3058 -3.1199 -7.4357 12 6 3.4534 -1.1929 -8.3839 13 7 3.5407 0.0974 -8.1831 14 14 3.6661 -1.8868 -10.1051 15 1 2.4304 -2.6070 -10.5048 16 1 3.9219 -0.7771 -11.0581 17 1 4.8146 -2.8281 -10.1209 18 6 3.1449 -2.1975 -4.8696 19 6 2.7615 -1.6808 -3.6666 20 6 2.0400 -0.7212 1.2492 21 6 1.6764 0.0932 2.4924 22 6 0.1994 -0.1218 2.8289 23 6 2.5394 -0.3623 3.6710 24 6 1.9267 1.5779 2.2208 25 1 -0.3633 -0.9540 0.3823 26 1 -0.3634 0.8079 0.6351 27 1 -0.3633 0.1459 -1.0171 28 1 1.6054 -1.7199 -1.2950 29 1 3.1263 -0.7995 -1.2055 30 1 1.1415 1.1032 -4.7366 31 1 1.8065 0.1948 -6.9064 32 1 3.7156 0.6935 -8.9282 33 1 3.7046 -3.1202 -4.9091 34 1 3.0185 -2.1958 -2.7528 35 1 1.5795 -1.7071 1.3133 36 1 3.1231 -0.8293 1.1898 37 1 0.0318 -1.1703 3.0751 38 1 -0.0731 0.4998 3.6818 39 1 -0.4126 0.1520 1.9695 40 1 3.5916 -0.2091 3.4312 41 1 2.2806 0.2182 4.5565 42 1 2.3610 -1.4200 3.8644 43 1 1.3118 1.9024 1.3813 44 1 1.6681 2.1580 3.1066 45 1 2.9789 1.7310 1.9811 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709233697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:34 Heat of formation + Delta-G solvation = -55.694211 kcal Electronic energy + Delta-G solvation = -21193.676846 eV Core-core repulsion = 18174.902428 eV Total energy + Delta-G solvation = -3018.774418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.72955 -39.59195 -38.06028 -35.26827 -34.18524 -31.65719 -30.86743 -29.05253 -28.20367 -27.48169 -27.12910 -26.26642 -23.07532 -22.49119 -21.12420 -19.57936 -19.19455 -18.50835 -17.14966 -17.02476 -16.37672 -15.75409 -15.62209 -15.56427 -15.30983 -14.75852 -14.58477 -14.07444 -13.99844 -13.72665 -13.59106 -13.39403 -13.06997 -13.00767 -12.91129 -12.77490 -12.53149 -12.43206 -12.36617 -12.31723 -11.90158 -11.76062 -11.61276 -11.48165 -11.34951 -11.25016 -11.08382 -10.90569 -10.85751 -9.56773 -8.84497 -8.54455 -6.25205 0.95481 1.02006 1.40062 1.51523 1.53455 2.24527 2.60616 2.76912 3.68122 3.82450 3.85582 3.93827 4.06756 4.15788 4.28021 4.35018 4.38260 4.50200 4.60823 4.70041 4.73134 4.78451 4.87270 4.88588 4.95604 4.99240 5.02520 5.04699 5.06983 5.15637 5.17641 5.20450 5.23696 5.29535 5.36629 5.45052 5.47862 5.58660 5.61560 5.65193 5.68360 5.88575 6.06545 6.26971 6.57636 6.82000 6.96994 7.10120 8.43147 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.049999 B = 0.002893 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.876673 B = 9674.867236 C = 9826.276477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.081 0.919 4 C 0.063 3.937 5 O -0.333 6.333 6 C 0.010 3.990 7 C -0.138 4.138 8 C -0.142 4.142 9 C 0.053 3.947 10 C -0.503 4.503 11 H 0.075 0.925 12 C 0.030 3.970 13 N -0.842 5.842 14 Si 0.984 3.016 15 H -0.261 1.261 16 H -0.270 1.270 17 H -0.261 1.261 18 C -0.201 4.201 19 C -0.171 4.171 20 C -0.099 4.099 21 C -0.064 4.064 22 C -0.165 4.165 23 C -0.140 4.140 24 C -0.149 4.149 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.285 0.715 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 0.323 18.406 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.099 0.901 4 C -0.012 4.012 5 O -0.249 6.249 6 C -0.034 4.034 7 C -0.156 4.156 8 C -0.161 4.161 9 C 0.052 3.948 10 C -0.534 4.534 11 H 0.093 0.907 12 C -0.182 4.182 13 N -0.470 5.470 14 Si 0.805 3.195 15 H -0.185 1.185 16 H -0.194 1.194 17 H -0.185 1.185 18 C -0.221 4.221 19 C -0.190 4.190 20 C -0.136 4.136 21 C -0.064 4.064 22 C -0.222 4.222 23 C -0.197 4.197 24 C -0.206 4.206 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.787 0.710 18.341 18.741 hybrid contribution 0.452 -0.332 -0.978 1.127 sum -3.335 0.377 17.363 17.684 Atomic orbital electron populations 1.22118 0.94411 1.02551 1.01254 1.21260 0.97062 1.00496 0.91572 0.90090 1.22860 0.98862 0.95370 0.84143 1.85816 1.75794 1.50885 1.12379 1.18725 1.04113 0.95738 0.84826 1.20026 1.04408 1.00422 0.90779 1.20901 1.00440 0.99014 0.95781 1.17943 0.90776 0.92695 0.93433 1.19659 1.43466 0.94802 0.95426 0.90704 1.26711 0.91994 0.94703 1.04807 1.69862 1.37373 1.04944 1.34855 0.85220 0.79766 0.78683 0.75787 1.18517 1.19420 1.18514 1.20871 1.06344 1.02654 0.92216 1.20712 1.03218 0.96875 0.98194 1.21659 1.00865 0.98818 0.92278 1.20464 0.96328 0.95194 0.94402 1.22426 0.95342 1.01717 1.02710 1.21877 0.99200 1.01298 0.97320 1.22032 1.01488 0.95308 1.01735 0.91640 0.90283 0.94245 0.92903 0.93243 0.87205 0.87338 0.90422 0.87649 0.85703 0.91162 0.91846 0.92660 0.92580 0.90356 0.92876 0.92142 0.92442 0.92357 0.92157 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 7.51 71.98 0.54 -2.68 16 2 C -0.09 -2.00 2.10 -10.80 -0.02 -2.02 16 3 H 0.08 1.98 5.88 -2.39 -0.01 1.96 16 4 C 0.06 1.92 4.09 71.98 0.29 2.22 16 5 O -0.33 -13.31 9.41 -89.93 -0.85 -14.15 16 6 C 0.01 0.46 6.71 22.79 0.15 0.62 16 7 C -0.14 -6.84 9.92 22.11 0.22 -6.62 16 8 C -0.14 -7.75 8.59 22.48 0.19 -7.55 16 9 C 0.05 2.97 5.53 -21.28 -0.12 2.86 16 10 C -0.50 -27.77 9.04 23.40 0.21 -27.56 16 11 H 0.07 3.95 7.87 -2.91 -0.02 3.93 16 12 C 0.03 1.56 5.23 85.23 0.45 2.01 16 13 N -0.84 -45.55 10.96 21.82 0.24 -45.31 16 14 Si 0.98 39.29 29.57 68.60 2.03 41.31 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 16 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 18 C -0.20 -10.10 9.74 22.48 0.22 -9.88 16 19 C -0.17 -7.75 8.96 22.11 0.20 -7.55 16 20 C -0.10 -1.82 4.07 30.59 0.12 -1.70 16 21 C -0.06 -1.00 0.78 -52.18 -0.04 -1.04 16 22 C -0.17 -2.38 7.91 71.98 0.57 -1.81 16 23 C -0.14 -1.93 8.40 71.98 0.60 -1.33 16 24 C -0.15 -2.42 7.52 71.98 0.54 -1.88 16 25 H 0.06 1.27 7.30 -2.38 -0.02 1.26 16 26 H 0.08 1.46 5.41 -2.39 -0.01 1.44 16 27 H 0.04 1.06 7.37 -2.39 -0.02 1.05 16 28 H 0.05 1.57 7.64 -2.39 -0.02 1.56 16 29 H 0.05 1.50 7.65 -2.38 -0.02 1.48 16 30 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 31 H 0.11 6.15 6.35 -2.91 -0.02 6.13 16 32 H 0.29 14.04 8.30 -92.70 -0.77 13.27 16 33 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 34 H 0.13 4.77 6.27 -2.91 -0.02 4.76 16 35 H 0.07 1.23 7.85 -2.38 -0.02 1.21 16 36 H 0.06 1.18 8.01 -2.39 -0.02 1.16 16 37 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 1.17 3.63 -2.39 -0.01 1.16 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 1.03 5.36 -2.39 -0.01 1.02 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -60.24 345.38 6.51 -53.73 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.95 Total: 28.34 kcal Atomic # 6 Polarization: -68.05 SS G_CDS: 4.13 Total: -63.92 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.24 Total: -45.31 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.85 Total: -14.15 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.31 kcal Total: -60.24 6.51 -53.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709233697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.960 kcal (2) G-P(sol) polarization free energy of solvation -60.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds