Wall clock time and date at job start Thu Apr 9 2020 15:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35969 * 116.99882 * 2 1 4 4 C 1.38741 * 119.98423 * 359.97438 * 3 2 1 5 5 C 1.38066 * 120.01081 * 179.72222 * 4 3 2 6 6 C 1.50700 * 120.00899 * 180.29651 * 5 4 3 7 7 C 1.38873 * 119.98780 * 0.55226 * 5 4 3 8 8 N 1.40104 * 120.01636 * 179.74223 * 7 5 4 9 9 C 1.34778 * 120.00124 * 154.87792 * 8 7 5 10 10 O 1.21298 * 119.99671 * 354.48466 * 9 8 7 11 11 C 1.50699 * 120.00404 * 174.47835 * 9 8 7 12 12 H 1.08996 * 109.46865 * 60.00271 * 11 9 8 13 13 C 1.53007 * 109.47037 * 300.00550 * 11 9 8 14 14 C 1.50698 * 109.47149 * 180.02562 * 11 9 8 15 15 H 1.07994 * 120.00365 * 359.97438 * 14 11 9 16 16 C 1.37878 * 119.99695 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00521 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99905 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47076 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47014 * 120.00064 * 18 16 14 21 21 H 1.48502 * 109.46985 * 239.99787 * 18 16 14 22 22 C 1.38822 * 119.96843 * 359.46971 * 7 5 4 23 23 C 1.38112 * 119.98231 * 0.25615 * 22 7 5 24 24 C 1.50703 * 119.99006 * 180.02562 * 23 22 7 25 25 H 1.08990 * 109.47139 * 60.00235 * 1 2 3 26 26 H 1.09008 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46973 * 300.00030 * 1 2 3 28 28 H 1.07998 * 119.99492 * 359.97438 * 4 3 2 29 29 H 1.08993 * 109.47251 * 270.25933 * 6 5 4 30 30 H 1.09011 * 109.46849 * 30.25682 * 6 5 4 31 31 H 1.09005 * 109.47656 * 150.25224 * 6 5 4 32 32 H 0.96995 * 120.00238 * 334.88726 * 8 7 5 33 33 H 1.08994 * 109.46904 * 179.97438 * 13 11 9 34 34 H 1.08994 * 109.46954 * 59.99696 * 13 11 9 35 35 H 1.09000 * 109.46825 * 300.00058 * 13 11 9 36 36 H 0.96995 * 120.00337 * 180.02562 * 17 16 14 37 37 H 1.07994 * 120.01122 * 180.22729 * 22 7 5 38 38 H 1.09008 * 109.47077 * 89.99579 * 24 23 22 39 39 H 1.09000 * 109.47493 * 209.99184 * 24 23 22 40 40 H 1.08997 * 109.47239 * 330.00001 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3749 -0.0005 5 6 1.9165 3.6053 0.0053 6 6 1.0953 4.8689 0.0114 7 6 3.3033 3.6784 0.0000 8 7 3.9393 4.9268 0.0005 9 6 5.1888 5.0463 0.4914 10 8 5.7247 4.0971 1.0235 11 6 5.9201 6.3592 0.3792 12 1 5.3575 7.1341 0.8998 13 6 6.0648 6.7380 -1.0962 14 6 7.2870 6.2275 1.0000 15 1 7.5952 5.2873 1.4328 16 6 8.1437 7.3076 1.0162 17 7 7.7683 8.4528 0.4896 18 14 9.8378 7.1446 1.7863 19 1 10.0154 5.7642 2.3040 20 1 10.8761 7.4262 0.7627 21 1 9.9688 8.1137 2.9039 22 6 4.0591 2.5140 0.0001 23 6 3.4314 1.2838 0.0000 24 6 4.2517 0.0195 0.0007 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2118 2.3179 -0.0014 29 1 0.8933 5.1759 -1.0147 30 1 0.1530 4.6873 0.5286 31 1 1.6455 5.6574 0.5250 32 1 3.4805 5.7050 -0.3525 33 1 6.5934 7.6877 -1.1772 34 1 5.0764 6.8331 -1.5454 35 1 6.6274 5.9630 -1.6167 36 1 8.3712 9.2125 0.5007 37 1 5.1376 2.5700 -0.0002 38 1 4.4490 -0.2850 1.0286 39 1 3.7032 -0.7699 -0.5131 40 1 5.1963 0.1991 -0.5127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597571706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:36 Heat of formation + Delta-G solvation = -59.757730 kcal Electronic energy + Delta-G solvation = -21521.824053 eV Core-core repulsion = 18301.614422 eV Total energy + Delta-G solvation = -3220.209631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48455 -39.16826 -37.22585 -34.35770 -33.83197 -33.02776 -30.67242 -29.15152 -28.71101 -27.40653 -25.20083 -24.68679 -23.17353 -21.95699 -20.61101 -19.41559 -17.42045 -17.12193 -16.39213 -15.95260 -15.76976 -15.53002 -14.58280 -14.51307 -14.12846 -13.66519 -13.48168 -13.15586 -13.10600 -13.01849 -12.73072 -12.54205 -12.17493 -11.81374 -11.75551 -11.64127 -11.52773 -11.10390 -11.04779 -10.76354 -10.71489 -10.68696 -10.30036 -10.00419 -9.49723 -9.02650 -8.70728 -8.44920 -8.31481 -7.26535 -6.07692 -4.11247 1.47273 1.63601 3.30497 3.33672 3.38339 3.46213 3.47799 3.75879 4.04378 4.44477 4.79047 4.91434 5.01523 5.04801 5.16931 5.25918 5.29692 5.35577 5.54502 5.60811 5.71459 5.75544 5.86987 5.93298 5.95470 6.23205 6.28476 6.42629 6.43512 6.55481 6.69226 6.75909 6.84278 6.89109 7.24859 7.40158 7.54953 7.69339 7.91628 8.05614 8.31490 8.97618 9.04219 9.54716 11.00017 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.004148 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.436563 B = 6748.161681 C = 7449.972387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.093 3.907 4 C -0.183 4.183 5 C -0.099 4.099 6 C -0.112 4.112 7 C 0.138 3.862 8 N -0.682 5.682 9 C 0.517 3.483 10 O -0.522 6.522 11 C 0.031 3.969 12 H 0.055 0.945 13 C -0.133 4.133 14 C -0.502 4.502 15 H 0.076 0.924 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.900 3.100 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.096 4.096 23 C -0.099 4.099 24 C -0.101 4.101 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.125 0.875 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.406 0.594 33 H 0.095 0.905 34 H 0.012 0.988 35 H 0.033 0.967 36 H 0.261 0.739 37 H 0.155 0.845 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.303 -10.359 -3.565 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.048 3.952 4 C -0.203 4.203 5 C -0.102 4.102 6 C -0.169 4.169 7 C 0.042 3.958 8 N -0.327 5.327 9 C 0.309 3.691 10 O -0.397 6.397 11 C 0.010 3.990 12 H 0.072 0.928 13 C -0.191 4.191 14 C -0.541 4.541 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.535 5.535 18 Si 0.728 3.272 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.117 4.117 23 C -0.100 4.100 24 C -0.158 4.158 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.242 0.758 33 H 0.114 0.886 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.173 0.827 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.669 -10.985 -3.201 18.604 hybrid contribution 0.242 0.632 0.220 0.712 sum -14.427 -10.353 -2.981 18.006 Atomic orbital electron populations 1.22961 0.79257 1.03330 1.01048 1.86046 1.20567 1.27056 1.89490 1.18681 0.91670 0.83871 1.00959 1.20742 0.99233 0.91217 1.09064 1.19350 0.91906 0.95162 1.03795 1.20704 0.99214 0.94811 1.02186 1.17706 0.90582 0.86444 1.01092 1.44105 1.17362 1.08535 1.62673 1.22285 0.79197 0.92993 0.74673 1.90499 1.66386 1.41241 1.41532 1.18911 0.96205 0.87942 0.95982 0.92753 1.21762 0.98066 1.04126 0.95193 1.21162 0.97495 0.98441 1.36967 0.90587 1.24947 0.98791 0.95065 0.95377 1.69871 1.36528 1.01697 1.45439 0.86385 0.83580 0.78350 0.78891 1.19502 1.21011 1.21020 1.21280 1.01882 0.89256 0.99241 1.19144 0.90293 0.95888 1.04708 1.20568 0.98790 0.94202 1.02201 0.93028 0.88727 0.92999 0.85677 0.91208 0.91502 0.91343 0.75809 0.88608 0.96854 0.94816 0.92935 0.82720 0.91506 0.91521 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.09 9.53 -19.64 -0.19 -4.28 16 3 C 0.09 1.37 6.66 -39.23 -0.26 1.10 16 4 C -0.18 -2.46 8.69 -39.46 -0.34 -2.80 16 5 C -0.10 -1.43 5.89 -104.45 -0.62 -2.04 16 6 C -0.11 -1.25 9.44 36.01 0.34 -0.91 16 7 C 0.14 2.39 6.41 -83.62 -0.54 1.86 16 8 N -0.68 -12.27 4.82 -9.83 -0.05 -12.32 16 9 C 0.52 11.60 6.95 -10.99 -0.08 11.53 16 10 O -0.52 -13.15 12.62 5.54 0.07 -13.08 16 11 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 12 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 13 C -0.13 -3.00 8.87 37.16 0.33 -2.67 16 14 C -0.50 -13.97 8.37 -34.44 -0.29 -14.26 16 15 H 0.08 2.23 6.75 -52.49 -0.35 1.88 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -24.75 11.32 55.43 0.63 -24.12 16 18 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.10 -1.76 8.37 -39.41 -0.33 -2.09 16 23 C -0.10 -1.59 5.89 -104.50 -0.62 -2.21 16 24 C -0.10 -1.38 9.79 36.01 0.35 -1.03 16 25 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 26 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.13 1.31 6.29 -52.49 -0.33 0.98 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.63 8.09 -51.92 -0.42 0.21 16 31 H 0.07 0.79 6.99 -51.93 -0.36 0.42 16 32 H 0.41 6.19 7.01 -40.82 -0.29 5.90 16 33 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 34 H 0.01 0.24 7.70 -51.93 -0.40 -0.16 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.16 3.16 5.79 -52.49 -0.30 2.86 16 38 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 40 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -31.01 326.88 -6.65 -37.66 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.63 Total: 4.93 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.39 Total: -10.25 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.58 Total: -36.44 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.12 Total: -17.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.01 -6.65 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597571706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.094 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds