Wall clock time and date at job start Thu Apr 9 2020 15:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35969 * 116.99882 * 2 1 4 4 C 1.38741 * 119.98423 * 359.97438 * 3 2 1 5 5 C 1.38066 * 120.01081 * 179.72222 * 4 3 2 6 6 C 1.50700 * 120.00899 * 180.29651 * 5 4 3 7 7 C 1.38873 * 119.98780 * 0.55226 * 5 4 3 8 8 N 1.40104 * 120.01636 * 179.74223 * 7 5 4 9 9 C 1.34778 * 120.00124 * 154.87792 * 8 7 5 10 10 O 1.21298 * 119.99671 * 354.48466 * 9 8 7 11 11 C 1.50699 * 120.00404 * 174.47835 * 9 8 7 12 12 H 1.08996 * 109.46865 * 60.00271 * 11 9 8 13 13 C 1.53007 * 109.47037 * 300.00550 * 11 9 8 14 14 C 1.50698 * 109.47149 * 180.02562 * 11 9 8 15 15 H 1.07994 * 120.00365 * 359.97438 * 14 11 9 16 16 C 1.37878 * 119.99695 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00521 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99905 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47076 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47014 * 120.00064 * 18 16 14 21 21 H 1.48502 * 109.46985 * 239.99787 * 18 16 14 22 22 C 1.38822 * 119.96843 * 359.46971 * 7 5 4 23 23 C 1.38112 * 119.98231 * 0.25615 * 22 7 5 24 24 C 1.50703 * 119.99006 * 180.02562 * 23 22 7 25 25 H 1.08990 * 109.47139 * 60.00235 * 1 2 3 26 26 H 1.09008 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46973 * 300.00030 * 1 2 3 28 28 H 1.07998 * 119.99492 * 359.97438 * 4 3 2 29 29 H 1.08993 * 109.47251 * 270.25933 * 6 5 4 30 30 H 1.09011 * 109.46849 * 30.25682 * 6 5 4 31 31 H 1.09005 * 109.47656 * 150.25224 * 6 5 4 32 32 H 0.96995 * 120.00238 * 334.88726 * 8 7 5 33 33 H 1.08994 * 109.46904 * 179.97438 * 13 11 9 34 34 H 1.08994 * 109.46954 * 59.99696 * 13 11 9 35 35 H 1.09000 * 109.46825 * 300.00058 * 13 11 9 36 36 H 0.96995 * 120.00337 * 180.02562 * 17 16 14 37 37 H 1.07994 * 120.01122 * 180.22729 * 22 7 5 38 38 H 1.09008 * 109.47077 * 89.99579 * 24 23 22 39 39 H 1.09000 * 109.47493 * 209.99184 * 24 23 22 40 40 H 1.08997 * 109.47239 * 330.00001 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3749 -0.0005 5 6 1.9165 3.6053 0.0053 6 6 1.0953 4.8689 0.0114 7 6 3.3033 3.6784 0.0000 8 7 3.9393 4.9268 0.0005 9 6 5.1888 5.0463 0.4914 10 8 5.7247 4.0971 1.0235 11 6 5.9201 6.3592 0.3792 12 1 5.3575 7.1341 0.8998 13 6 6.0648 6.7380 -1.0962 14 6 7.2870 6.2275 1.0000 15 1 7.5952 5.2873 1.4328 16 6 8.1437 7.3076 1.0162 17 7 7.7683 8.4528 0.4896 18 14 9.8378 7.1446 1.7863 19 1 10.0154 5.7642 2.3040 20 1 10.8761 7.4262 0.7627 21 1 9.9688 8.1137 2.9039 22 6 4.0591 2.5140 0.0001 23 6 3.4314 1.2838 0.0000 24 6 4.2517 0.0195 0.0007 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2118 2.3179 -0.0014 29 1 0.8933 5.1759 -1.0147 30 1 0.1530 4.6873 0.5286 31 1 1.6455 5.6574 0.5250 32 1 3.4805 5.7050 -0.3525 33 1 6.5934 7.6877 -1.1772 34 1 5.0764 6.8331 -1.5454 35 1 6.6274 5.9630 -1.6167 36 1 8.3712 9.2125 0.5007 37 1 5.1376 2.5700 -0.0002 38 1 4.4490 -0.2850 1.0286 39 1 3.7032 -0.7699 -0.5131 40 1 5.1963 0.1991 -0.5127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597571706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:36 Heat of formation + Delta-G solvation = -78.502908 kcal Electronic energy + Delta-G solvation = -21522.636905 eV Core-core repulsion = 18301.614422 eV Total energy + Delta-G solvation = -3221.022483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77727 -40.53492 -38.48080 -35.85067 -35.67346 -34.29277 -32.58562 -30.17653 -29.95086 -28.23928 -27.23329 -25.85770 -24.73154 -23.32085 -21.85240 -21.03574 -18.69010 -18.41336 -18.15310 -17.51532 -17.05122 -16.64142 -16.40967 -16.06676 -15.33330 -14.90429 -14.76578 -14.59655 -14.43381 -14.15731 -14.07046 -13.80550 -13.57934 -13.03721 -12.93644 -12.80604 -12.76371 -12.68764 -12.60565 -12.55680 -12.30046 -12.11177 -12.03379 -11.73449 -11.06661 -10.81136 -10.59024 -10.30461 -9.59766 -8.51346 -8.17084 -6.27410 0.30201 0.38697 1.39031 1.41427 1.54538 1.82304 2.22661 2.44012 2.49509 2.77778 3.12964 3.75713 3.85051 4.06847 4.14034 4.34392 4.41225 4.46698 4.49903 4.59616 4.71137 4.75591 4.77953 4.80377 4.81901 4.90006 4.93335 4.96379 4.98076 5.21539 5.26787 5.33490 5.44306 5.51029 5.61206 5.72466 5.89464 5.97537 6.17798 6.51002 6.63986 6.81905 7.33606 7.44309 8.89019 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.004148 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.436563 B = 6748.161681 C = 7449.972387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.100 3.900 4 C -0.179 4.179 5 C -0.088 4.088 6 C -0.113 4.113 7 C 0.103 3.897 8 N -0.663 5.663 9 C 0.519 3.481 10 O -0.560 6.560 11 C 0.028 3.972 12 H 0.047 0.953 13 C -0.121 4.121 14 C -0.529 4.529 15 H 0.050 0.950 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.955 3.045 19 H -0.280 1.280 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.098 4.098 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.062 0.938 28 H 0.163 0.837 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.420 0.580 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.022 0.978 36 H 0.266 0.734 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.028 -10.662 -4.033 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.055 3.945 4 C -0.198 4.198 5 C -0.090 4.090 6 C -0.170 4.170 7 C 0.008 3.992 8 N -0.308 5.308 9 C 0.309 3.691 10 O -0.438 6.438 11 C 0.007 3.993 12 H 0.065 0.935 13 C -0.179 4.179 14 C -0.568 4.568 15 H 0.068 0.932 16 C -0.178 4.178 17 N -0.549 5.549 18 Si 0.781 3.219 19 H -0.205 1.205 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.154 4.154 25 H 0.084 0.916 26 H 0.136 0.864 27 H 0.081 0.919 28 H 0.181 0.819 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.258 0.742 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.451 -11.280 -3.695 21.105 hybrid contribution 0.924 0.615 0.351 1.164 sum -16.527 -10.665 -3.344 19.952 Atomic orbital electron populations 1.23341 0.76645 1.05484 1.02225 1.86042 1.23209 1.26080 1.88988 1.18777 0.91282 0.85167 0.99319 1.21144 1.01018 0.90131 1.07483 1.19721 0.90676 0.97202 1.01430 1.20820 0.99526 0.92793 1.03832 1.17899 0.92000 0.85389 1.03880 1.43660 1.15865 1.09684 1.61622 1.21849 0.80501 0.91784 0.74918 1.90491 1.67721 1.42031 1.43519 1.18822 0.94931 0.88856 0.96710 0.93531 1.21578 0.99856 1.02329 0.94108 1.21292 0.99716 0.97710 1.38055 0.93220 1.25567 1.01724 0.94796 0.95685 1.69940 1.37504 1.01950 1.45510 0.85548 0.80040 0.77798 0.78532 1.20522 1.19920 1.19943 1.21095 1.00567 0.90976 1.01237 1.19309 0.91726 0.95635 1.05432 1.20560 0.98631 0.93862 1.02365 0.91574 0.86351 0.91907 0.81940 0.89079 0.89010 0.91940 0.74207 0.90711 0.92948 0.95851 0.92518 0.86087 0.91457 0.90136 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.58 9.53 -93.20 -0.89 -8.47 16 3 C 0.10 2.74 6.66 22.50 0.15 2.89 16 4 C -0.18 -4.20 8.69 22.35 0.19 -4.01 16 5 C -0.09 -2.32 5.89 -19.75 -0.12 -2.43 16 6 C -0.11 -2.11 9.44 71.24 0.67 -1.44 16 7 C 0.10 3.57 6.41 38.11 0.24 3.81 16 8 N -0.66 -23.96 4.82 -303.39 -1.46 -25.42 16 9 C 0.52 24.13 6.95 87.66 0.61 24.74 16 10 O -0.56 -29.92 12.62 -3.09 -0.04 -29.96 16 11 C 0.03 1.40 2.64 -12.28 -0.03 1.37 16 12 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.12 -5.46 8.87 71.98 0.64 -4.82 16 14 C -0.53 -30.54 8.37 25.60 0.21 -30.33 16 15 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 16 C 0.02 1.20 5.30 84.65 0.45 1.65 16 17 N -0.91 -50.57 11.32 21.45 0.24 -50.33 16 18 Si 0.95 44.89 29.54 68.60 2.03 46.91 16 19 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 C -0.12 -4.48 8.37 22.38 0.19 -4.29 16 23 C -0.12 -3.86 5.89 -19.78 -0.12 -3.98 16 24 C -0.10 -2.72 9.79 71.24 0.70 -2.02 16 25 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 26 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 28 H 0.16 2.55 6.29 -2.91 -0.02 2.54 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.29 8.09 -2.38 -0.02 1.27 16 31 H 0.06 1.26 6.99 -2.38 -0.02 1.25 16 32 H 0.42 12.35 7.01 -92.71 -0.65 11.71 16 33 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 34 H 0.05 1.90 7.70 -2.39 -0.02 1.88 16 35 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 37 H 0.12 5.37 5.79 -2.91 -0.02 5.35 16 38 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.08 1.96 7.53 -2.39 -0.02 1.94 16 40 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 Total: -1.00 -69.67 326.88 5.19 -64.49 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.41 Total: 20.31 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.90 Total: -17.54 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -1.22 Total: -75.75 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.93 Total: -38.42 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.67 5.19 -64.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597571706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.016 kcal (2) G-P(sol) polarization free energy of solvation -69.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds