Wall clock time and date at job start Thu Apr 9 2020 15:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35966 * 116.99862 * 2 1 4 4 C 1.38746 * 119.98527 * 359.97438 * 3 2 1 5 5 C 1.38074 * 120.01493 * 180.02562 * 4 3 2 6 6 C 1.50696 * 120.00600 * 180.02562 * 5 4 3 7 7 C 1.38874 * 119.98294 * 359.97438 * 5 4 3 8 8 N 1.40102 * 120.01108 * 180.27839 * 7 5 4 9 9 C 1.34776 * 120.00016 * 145.03713 * 8 7 5 10 10 O 1.21297 * 120.00158 * 4.49060 * 9 8 7 11 11 C 1.50699 * 120.00244 * 184.49330 * 9 8 7 12 12 H 1.09002 * 109.47172 * 299.99618 * 11 9 8 13 13 C 1.52995 * 109.47552 * 59.99837 * 11 9 8 14 14 C 1.50701 * 109.47335 * 180.02562 * 11 9 8 15 15 H 1.08003 * 119.99684 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00264 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99815 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00309 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47181 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47251 * 120.00110 * 18 16 14 21 21 H 1.48505 * 109.47554 * 240.00558 * 18 16 14 22 22 C 1.38817 * 119.96934 * 0.02562 * 7 5 4 23 23 C 1.38112 * 119.99118 * 359.97438 * 22 7 5 24 24 C 1.50697 * 119.99521 * 180.02562 * 23 22 7 25 25 H 1.08997 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47641 * 300.00256 * 1 2 3 27 27 H 1.09009 * 109.46682 * 60.00136 * 1 2 3 28 28 H 1.07996 * 119.99640 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.47408 * 269.97254 * 6 5 4 30 30 H 1.09001 * 109.47248 * 29.98033 * 6 5 4 31 31 H 1.09007 * 109.46787 * 149.97245 * 6 5 4 32 32 H 0.97001 * 120.00598 * 325.04163 * 8 7 5 33 33 H 1.09002 * 109.47061 * 59.99712 * 13 11 9 34 34 H 1.08999 * 109.47312 * 180.02562 * 13 11 9 35 35 H 1.09007 * 109.46990 * 300.00549 * 13 11 9 36 36 H 0.97006 * 119.99618 * 179.97438 * 17 16 14 37 37 H 1.07998 * 120.00629 * 179.97438 * 22 7 5 38 38 H 1.09006 * 109.46836 * 90.00874 * 24 23 22 39 39 H 1.09000 * 109.46970 * 209.99856 * 24 23 22 40 40 H 1.08993 * 109.47349 * 330.00860 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3749 -0.0005 5 6 1.9165 3.6055 -0.0011 6 6 1.0952 4.8690 -0.0011 7 6 3.3033 3.6785 -0.0005 8 7 3.9393 4.9268 0.0048 9 6 5.0974 5.0903 0.6746 10 8 5.6312 4.1386 1.2043 11 6 5.7292 6.4554 0.7654 12 1 5.9512 6.8204 -0.2374 13 6 4.7632 7.4196 1.4568 14 6 7.0060 6.3662 1.5610 15 1 7.3275 5.4159 1.9612 16 6 7.7636 7.4975 1.7779 17 7 7.3718 8.6546 1.2910 18 14 9.3458 7.3870 2.7647 19 1 9.5618 5.9832 3.1983 20 1 10.4868 7.8251 1.9212 21 1 9.2471 8.2646 3.9586 22 6 4.0590 2.5141 0.0000 23 6 3.4314 1.2838 0.0005 24 6 4.2517 0.0196 0.0017 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 0.2118 2.3180 -0.0005 29 1 0.8972 5.1737 -1.0287 30 1 0.1510 4.6886 0.5129 31 1 1.6434 5.6586 0.5128 32 1 3.5462 5.6736 -0.4734 33 1 4.5412 7.0545 2.4596 34 1 5.2201 8.4070 1.5221 35 1 3.8399 7.4840 0.8810 36 1 7.9047 9.4506 1.4439 37 1 5.1375 2.5702 0.0000 38 1 4.4489 -0.2846 1.0297 39 1 3.7031 -0.7700 -0.5118 40 1 5.1963 0.1989 -0.5117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597571707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:39 Heat of formation + Delta-G solvation = -61.400027 kcal Electronic energy + Delta-G solvation = -21531.169046 eV Core-core repulsion = 18310.888199 eV Total energy + Delta-G solvation = -3220.280847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46694 -39.14003 -37.22961 -34.32561 -33.81668 -33.03339 -30.66722 -29.13814 -28.71199 -27.41594 -25.19310 -24.67789 -23.17723 -21.90340 -20.61838 -19.42389 -17.43075 -17.10390 -16.44497 -15.91849 -15.77972 -15.51410 -14.57251 -14.42080 -14.15103 -13.58778 -13.57370 -13.26246 -13.13224 -12.93785 -12.71731 -12.50907 -12.17015 -11.80638 -11.75731 -11.66783 -11.50573 -11.08207 -11.02161 -10.78727 -10.69079 -10.64286 -10.31444 -10.00153 -9.40943 -9.01197 -8.72219 -8.43825 -8.33295 -7.33748 -6.07027 -4.10371 1.46439 1.61831 3.30901 3.32526 3.38642 3.46585 3.50673 3.77196 4.01108 4.45144 4.79128 4.90776 5.01299 5.04127 5.18433 5.26805 5.29724 5.35744 5.54798 5.62782 5.72878 5.74696 5.85351 5.94809 5.97372 6.20822 6.28576 6.41708 6.42885 6.55456 6.69499 6.77138 6.84993 6.89586 7.23934 7.40750 7.53900 7.70280 7.92626 8.06526 8.33273 8.98753 9.07725 9.55542 11.00699 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029191 B = 0.004183 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.970608 B = 6692.538819 C = 7468.067621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.098 3.902 4 C -0.187 4.187 5 C -0.091 4.091 6 C -0.113 4.113 7 C 0.132 3.868 8 N -0.685 5.685 9 C 0.518 3.482 10 O -0.525 6.525 11 C 0.031 3.969 12 H 0.055 0.945 13 C -0.133 4.133 14 C -0.502 4.502 15 H 0.076 0.924 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.900 3.100 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.085 4.085 23 C -0.103 4.103 24 C -0.101 4.101 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.126 0.874 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.406 0.594 33 H 0.032 0.968 34 H 0.095 0.905 35 H 0.012 0.988 36 H 0.261 0.739 37 H 0.149 0.851 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.747 -10.769 -5.001 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.053 3.947 4 C -0.206 4.206 5 C -0.093 4.093 6 C -0.170 4.170 7 C 0.037 3.963 8 N -0.331 5.331 9 C 0.309 3.691 10 O -0.399 6.399 11 C 0.010 3.990 12 H 0.073 0.927 13 C -0.191 4.191 14 C -0.540 4.540 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.536 5.536 18 Si 0.728 3.272 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.106 4.106 23 C -0.105 4.105 24 C -0.157 4.157 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.241 0.759 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.166 0.834 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.147 -11.394 -4.581 18.734 hybrid contribution 0.225 0.639 0.309 0.744 sum -13.922 -10.755 -4.272 18.104 Atomic orbital electron populations 1.22971 0.79189 1.03365 1.01092 1.86046 1.20628 1.27045 1.89407 1.18690 0.91661 0.83882 1.00426 1.20769 0.99283 0.91239 1.09331 1.19449 0.92106 0.95126 1.02653 1.20723 0.99212 0.94922 1.02156 1.17654 0.90449 0.86428 1.01785 1.44047 1.25498 1.10221 1.53325 1.22269 0.78214 0.93696 0.74925 1.90527 1.61299 1.42815 1.45256 1.18904 0.95090 0.85765 0.99255 0.92694 1.21760 0.95501 1.03781 0.98069 1.21167 1.04367 0.95584 1.32891 0.90613 1.24946 0.98181 0.95189 0.95887 1.69877 1.38728 0.99045 1.45902 0.86387 0.82834 0.78332 0.79660 1.19514 1.21016 1.21026 1.21139 1.01383 0.89420 0.98619 1.19129 0.90330 0.95879 1.05116 1.20563 0.98742 0.94210 1.02221 0.88695 0.92951 0.92998 0.85648 0.91237 0.91564 0.91071 0.75878 0.94887 0.88649 0.96892 0.92955 0.83390 0.91499 0.91518 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.06 9.53 -19.63 -0.19 -4.24 16 3 C 0.10 1.43 6.66 -39.22 -0.26 1.17 16 4 C -0.19 -2.50 8.68 -39.45 -0.34 -2.85 16 5 C -0.09 -1.31 5.89 -104.45 -0.62 -1.93 16 6 C -0.11 -1.30 9.48 36.00 0.34 -0.96 16 7 C 0.13 2.29 6.29 -83.63 -0.53 1.76 16 8 N -0.68 -12.30 4.61 -9.83 -0.05 -12.35 16 9 C 0.52 11.66 6.99 -10.99 -0.08 11.58 16 10 O -0.52 -13.33 12.88 5.54 0.07 -13.25 16 11 C 0.03 0.75 2.63 -92.93 -0.24 0.51 16 12 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.13 -2.99 8.87 37.15 0.33 -2.66 16 14 C -0.50 -14.01 8.37 -34.44 -0.29 -14.30 16 15 H 0.08 2.24 6.75 -52.48 -0.35 1.88 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -24.80 11.32 55.43 0.63 -24.18 16 18 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.09 -1.53 8.34 -39.41 -0.33 -1.86 16 23 C -0.10 -1.64 5.89 -104.50 -0.62 -2.25 16 24 C -0.10 -1.36 9.79 36.00 0.35 -1.01 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.05 0.38 7.66 -51.92 -0.40 -0.01 16 28 H 0.13 1.32 6.29 -52.49 -0.33 0.99 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.07 0.87 7.16 -51.92 -0.37 0.50 16 32 H 0.41 6.17 7.41 -40.82 -0.30 5.86 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 35 H 0.01 0.23 7.67 -51.92 -0.40 -0.17 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.15 2.94 6.21 -52.49 -0.33 2.62 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.82 7.52 -51.93 -0.39 0.43 16 40 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -31.21 327.81 -6.67 -37.87 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.67 Total: 4.64 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.38 Total: -10.04 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.58 Total: -36.52 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.12 Total: -17.50 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.21 -6.67 -37.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597571707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.526 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds