Wall clock time and date at job start Thu Apr 9 2020 15:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35966 * 116.99862 * 2 1 4 4 C 1.38746 * 119.98527 * 359.97438 * 3 2 1 5 5 C 1.38074 * 120.01493 * 180.02562 * 4 3 2 6 6 C 1.50696 * 120.00600 * 180.02562 * 5 4 3 7 7 C 1.38874 * 119.98294 * 359.97438 * 5 4 3 8 8 N 1.40102 * 120.01108 * 180.27839 * 7 5 4 9 9 C 1.34776 * 120.00016 * 145.03713 * 8 7 5 10 10 O 1.21297 * 120.00158 * 4.49060 * 9 8 7 11 11 C 1.50699 * 120.00244 * 184.49330 * 9 8 7 12 12 H 1.09002 * 109.47172 * 299.99618 * 11 9 8 13 13 C 1.52995 * 109.47552 * 59.99837 * 11 9 8 14 14 C 1.50701 * 109.47335 * 180.02562 * 11 9 8 15 15 H 1.08003 * 119.99684 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00264 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99815 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00309 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47181 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47251 * 120.00110 * 18 16 14 21 21 H 1.48505 * 109.47554 * 240.00558 * 18 16 14 22 22 C 1.38817 * 119.96934 * 0.02562 * 7 5 4 23 23 C 1.38112 * 119.99118 * 359.97438 * 22 7 5 24 24 C 1.50697 * 119.99521 * 180.02562 * 23 22 7 25 25 H 1.08997 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47641 * 300.00256 * 1 2 3 27 27 H 1.09009 * 109.46682 * 60.00136 * 1 2 3 28 28 H 1.07996 * 119.99640 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.47408 * 269.97254 * 6 5 4 30 30 H 1.09001 * 109.47248 * 29.98033 * 6 5 4 31 31 H 1.09007 * 109.46787 * 149.97245 * 6 5 4 32 32 H 0.97001 * 120.00598 * 325.04163 * 8 7 5 33 33 H 1.09002 * 109.47061 * 59.99712 * 13 11 9 34 34 H 1.08999 * 109.47312 * 180.02562 * 13 11 9 35 35 H 1.09007 * 109.46990 * 300.00549 * 13 11 9 36 36 H 0.97006 * 119.99618 * 179.97438 * 17 16 14 37 37 H 1.07998 * 120.00629 * 179.97438 * 22 7 5 38 38 H 1.09006 * 109.46836 * 90.00874 * 24 23 22 39 39 H 1.09000 * 109.46970 * 209.99856 * 24 23 22 40 40 H 1.08993 * 109.47349 * 330.00860 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3749 -0.0005 5 6 1.9165 3.6055 -0.0011 6 6 1.0952 4.8690 -0.0011 7 6 3.3033 3.6785 -0.0005 8 7 3.9393 4.9268 0.0048 9 6 5.0974 5.0903 0.6746 10 8 5.6312 4.1386 1.2043 11 6 5.7292 6.4554 0.7654 12 1 5.9512 6.8204 -0.2374 13 6 4.7632 7.4196 1.4568 14 6 7.0060 6.3662 1.5610 15 1 7.3275 5.4159 1.9612 16 6 7.7636 7.4975 1.7779 17 7 7.3718 8.6546 1.2910 18 14 9.3458 7.3870 2.7647 19 1 9.5618 5.9832 3.1983 20 1 10.4868 7.8251 1.9212 21 1 9.2471 8.2646 3.9586 22 6 4.0590 2.5141 0.0000 23 6 3.4314 1.2838 0.0005 24 6 4.2517 0.0196 0.0017 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 0.2118 2.3180 -0.0005 29 1 0.8972 5.1737 -1.0287 30 1 0.1510 4.6886 0.5129 31 1 1.6434 5.6586 0.5128 32 1 3.5462 5.6736 -0.4734 33 1 4.5412 7.0545 2.4596 34 1 5.2201 8.4070 1.5221 35 1 3.8399 7.4840 0.8810 36 1 7.9047 9.4506 1.4439 37 1 5.1375 2.5702 0.0000 38 1 4.4489 -0.2846 1.0297 39 1 3.7031 -0.7700 -0.5118 40 1 5.1963 0.1989 -0.5117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597571707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:39 Heat of formation + Delta-G solvation = -80.276222 kcal Electronic energy + Delta-G solvation = -21531.987579 eV Core-core repulsion = 18310.888199 eV Total energy + Delta-G solvation = -3221.099380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74201 -40.52259 -38.48560 -35.83448 -35.64718 -34.29899 -32.58312 -30.15868 -29.95234 -28.24474 -27.22664 -25.84779 -24.73443 -23.25711 -21.85929 -21.05834 -18.68170 -18.41632 -18.15345 -17.50936 -17.02581 -16.65641 -16.42374 -16.01387 -15.26688 -15.00831 -14.83049 -14.60622 -14.33898 -14.13650 -14.10433 -13.81761 -13.52499 -13.06669 -12.93975 -12.82598 -12.73669 -12.70335 -12.58365 -12.49596 -12.26804 -12.08847 -12.03491 -11.73836 -11.06124 -10.74896 -10.59940 -10.32560 -9.60599 -8.57629 -8.17014 -6.27124 0.30005 0.38290 1.38857 1.41201 1.54353 1.83088 2.24142 2.43179 2.49590 2.75352 3.13125 3.76691 3.84889 4.08853 4.14429 4.34041 4.41192 4.46275 4.51608 4.59475 4.72452 4.75375 4.77819 4.80193 4.82426 4.89032 4.93987 4.96742 4.98450 5.23235 5.27127 5.33487 5.46362 5.51793 5.61588 5.72827 5.89904 5.97632 6.18374 6.49810 6.64734 6.82200 7.35360 7.45746 8.89124 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029191 B = 0.004183 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.970608 B = 6692.538819 C = 7468.067621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.105 3.895 4 C -0.183 4.183 5 C -0.081 4.081 6 C -0.114 4.114 7 C 0.097 3.903 8 N -0.664 5.664 9 C 0.520 3.480 10 O -0.564 6.564 11 C 0.028 3.972 12 H 0.046 0.954 13 C -0.120 4.120 14 C -0.529 4.529 15 H 0.049 0.951 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.955 3.045 19 H -0.281 1.281 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.106 4.106 23 C -0.123 4.123 24 C -0.097 4.097 25 H 0.119 0.881 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.163 0.837 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.419 0.581 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.265 0.735 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.507 -11.042 -5.353 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.059 3.941 4 C -0.201 4.201 5 C -0.083 4.083 6 C -0.170 4.170 7 C 0.003 3.997 8 N -0.311 5.311 9 C 0.310 3.690 10 O -0.441 6.441 11 C 0.007 3.993 12 H 0.064 0.936 13 C -0.178 4.178 14 C -0.568 4.568 15 H 0.067 0.933 16 C -0.178 4.178 17 N -0.549 5.549 18 Si 0.781 3.219 19 H -0.206 1.206 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.154 4.154 25 H 0.137 0.863 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.180 0.820 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.257 0.743 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.961 -11.659 -4.965 21.172 hybrid contribution 0.940 0.606 0.368 1.178 sum -16.021 -11.053 -4.597 19.999 Atomic orbital electron populations 1.23349 0.76603 1.05515 1.02247 1.86043 1.23244 1.26063 1.88900 1.18789 0.91304 0.85151 0.98819 1.21159 1.01042 0.90164 1.07783 1.19794 0.90898 0.97116 1.00520 1.20828 0.99456 0.92892 1.03835 1.17854 0.91839 0.85395 1.04587 1.43595 1.24022 1.11328 1.52164 1.21841 0.79372 0.92456 0.75297 1.90514 1.62777 1.43527 1.47314 1.18819 0.94730 0.87491 0.98307 0.93592 1.21571 0.96611 1.01631 0.97971 1.21295 1.06565 0.94777 1.34122 0.93312 1.25563 1.00694 0.94888 0.96637 1.69946 1.39528 0.99297 1.46119 0.85552 0.79829 0.77747 0.78812 1.20568 1.19929 1.19899 1.20985 1.00130 0.91068 1.00505 1.19305 0.91731 0.95667 1.05749 1.20558 0.98677 0.93830 1.02337 0.86309 0.91949 0.91505 0.81971 0.88966 0.89176 0.91965 0.74274 0.95912 0.90805 0.92725 0.92531 0.86600 0.91568 0.90121 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.51 9.53 -93.16 -0.89 -8.39 16 3 C 0.11 2.85 6.66 22.50 0.15 3.00 16 4 C -0.18 -4.30 8.68 22.35 0.19 -4.10 16 5 C -0.08 -2.15 5.89 -19.75 -0.12 -2.27 16 6 C -0.11 -2.18 9.48 71.23 0.68 -1.50 16 7 C 0.10 3.36 6.29 38.11 0.24 3.60 16 8 N -0.66 -23.98 4.61 -303.40 -1.40 -25.38 16 9 C 0.52 24.22 6.99 87.66 0.61 24.83 16 10 O -0.56 -30.29 12.88 -3.08 -0.04 -30.33 16 11 C 0.03 1.39 2.63 -12.29 -0.03 1.35 16 12 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 13 C -0.12 -5.38 8.87 71.98 0.64 -4.74 16 14 C -0.53 -30.63 8.37 25.60 0.21 -30.41 16 15 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 16 C 0.02 1.20 5.30 84.65 0.45 1.65 16 17 N -0.91 -50.63 11.32 21.45 0.24 -50.39 16 18 Si 0.95 44.99 29.54 68.60 2.03 47.02 16 19 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 C -0.11 -3.98 8.34 22.38 0.19 -3.79 16 23 C -0.12 -3.93 5.89 -19.78 -0.12 -4.04 16 24 C -0.10 -2.67 9.79 71.24 0.70 -1.97 16 25 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 27 H 0.07 0.69 7.66 -2.38 -0.02 0.67 16 28 H 0.16 2.57 6.29 -2.91 -0.02 2.55 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.33 8.09 -2.39 -0.02 1.31 16 31 H 0.06 1.33 7.16 -2.38 -0.02 1.31 16 32 H 0.42 12.33 7.41 -92.71 -0.69 11.65 16 33 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 35 H 0.05 1.93 7.67 -2.38 -0.02 1.92 16 36 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 37 H 0.12 5.02 6.21 -2.91 -0.02 5.00 16 38 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.08 1.93 7.52 -2.39 -0.02 1.91 16 40 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 Total: -1.00 -70.02 327.81 5.22 -64.81 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.37 Total: 19.73 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 4.90 Total: -17.07 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.15 Total: -75.76 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.93 Total: -38.73 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -70.02 5.22 -64.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597571707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.469 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds