Wall clock time and date at job start Thu Apr 9 2020 15:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35894 * 117.00279 * 2 1 4 4 C 1.38804 * 120.01873 * 359.97438 * 3 2 1 5 5 C 1.38176 * 120.07988 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.93223 * 180.02562 * 5 4 3 7 7 C 1.38159 * 120.12549 * 359.76212 * 5 4 3 8 8 C 1.38888 * 120.04012 * 0.50841 * 7 5 4 9 9 N 1.39922 * 120.04050 * 179.74311 * 8 7 5 10 10 C 1.34781 * 120.00124 * 335.15227 * 9 8 7 11 11 O 1.21285 * 119.99696 * 354.48121 * 10 9 8 12 12 C 1.50702 * 119.99745 * 174.21127 * 10 9 8 13 13 H 1.08998 * 109.46849 * 300.26884 * 12 10 9 14 14 C 1.52997 * 109.47246 * 60.27465 * 12 10 9 15 15 C 1.50703 * 109.46745 * 180.27594 * 12 10 9 16 16 H 1.08003 * 119.99915 * 359.97438 * 15 12 10 17 17 C 1.37878 * 119.99976 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99613 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00104 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47321 * 89.99617 * 19 17 15 21 21 H 1.48497 * 109.47347 * 209.99759 * 19 17 15 22 22 H 1.48499 * 109.47489 * 329.99973 * 19 17 15 23 23 C 1.38586 * 120.01929 * 179.97438 * 3 2 1 24 24 C 1.50697 * 120.06057 * 359.96032 * 23 3 2 25 25 H 1.08997 * 109.47169 * 299.99834 * 1 2 3 26 26 H 1.09004 * 109.46883 * 59.99217 * 1 2 3 27 27 H 1.08991 * 109.47611 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.96002 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.47590 * 90.00070 * 6 5 4 30 30 H 1.09008 * 109.46667 * 209.99770 * 6 5 4 31 31 H 1.08996 * 109.47080 * 329.99181 * 6 5 4 32 32 H 1.08007 * 119.98205 * 180.25807 * 7 5 4 33 33 H 0.97002 * 120.00201 * 155.15374 * 9 8 7 34 34 H 1.09003 * 109.46882 * 179.97438 * 14 12 10 35 35 H 1.08999 * 109.47341 * 299.99558 * 14 12 10 36 36 H 1.09000 * 109.47153 * 59.99933 * 14 12 10 37 37 H 0.97003 * 119.99720 * 179.97438 * 18 17 15 38 38 H 1.08993 * 109.47686 * 270.01867 * 24 23 3 39 39 H 1.09001 * 109.47264 * 30.02398 * 24 23 3 40 40 H 1.09013 * 109.47073 * 150.02011 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2905 2.3752 -0.0005 5 6 1.9165 3.6070 0.0000 6 6 1.0930 4.8691 0.0000 7 6 3.2960 3.6837 0.0060 8 6 4.0570 2.5219 0.0009 9 7 5.4540 2.5997 0.0016 10 6 6.0682 3.6969 -0.4838 11 8 5.4165 4.5729 -1.0119 12 6 7.5639 3.8379 -0.3647 13 1 7.8482 3.8161 0.6873 14 6 8.2453 2.6830 -1.1013 15 6 7.9951 5.1468 -0.9745 16 1 7.2596 5.8100 -1.4056 17 6 9.3286 5.4972 -0.9831 18 7 10.2241 4.6894 -0.4586 19 14 9.8631 7.1193 -1.7396 20 1 9.8470 8.1796 -0.7000 21 1 11.2374 6.9820 -2.2853 22 1 8.9300 7.4861 -2.8350 23 6 3.4300 1.2837 0.0005 24 6 4.2524 0.0210 0.0020 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 0.2120 2.3183 -0.0005 29 1 0.8940 5.1732 1.0277 30 1 1.6401 5.6598 -0.5135 31 1 0.1494 4.6871 -0.5143 32 1 3.7829 4.6478 0.0106 33 1 5.9806 1.8639 0.3513 34 1 9.3271 2.7853 -1.0155 35 1 7.9335 1.7363 -0.6602 36 1 7.9609 2.7048 -2.1533 37 1 11.1623 4.9358 -0.4649 38 1 4.4500 -0.2828 1.0299 39 1 3.7054 -0.7696 -0.5117 40 1 5.1969 0.2019 -0.5113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597579639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:42 Heat of formation + Delta-G solvation = -60.005559 kcal Electronic energy + Delta-G solvation = -21554.466170 eV Core-core repulsion = 18334.245792 eV Total energy + Delta-G solvation = -3220.220378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51980 -39.18090 -37.23416 -34.73980 -33.85407 -32.60049 -30.68282 -29.11332 -28.67580 -27.60519 -25.20835 -24.67363 -23.33424 -21.74292 -20.63755 -19.48333 -17.64081 -16.72668 -16.36141 -15.82827 -15.74796 -15.48981 -14.99997 -14.49632 -14.30524 -13.71963 -13.56295 -13.19911 -13.14055 -12.80079 -12.73056 -12.56884 -12.08128 -11.82768 -11.76950 -11.64873 -11.36992 -11.09234 -11.01793 -10.77908 -10.73821 -10.68184 -10.32311 -10.01185 -9.70671 -9.04758 -8.69405 -8.38541 -7.91231 -7.61471 -6.08045 -4.11848 1.47626 1.69130 3.16731 3.31668 3.37654 3.44380 3.45432 3.83000 4.05257 4.43821 4.82164 5.00024 5.03736 5.04898 5.24537 5.25650 5.28910 5.33371 5.56658 5.67045 5.70925 5.76010 5.79334 5.90573 5.95369 6.15289 6.33947 6.43866 6.53089 6.61244 6.66991 6.74657 6.85576 6.88630 7.23129 7.39774 7.52450 7.69520 7.89687 8.03631 8.29372 8.95794 9.00583 9.53958 10.99608 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028649 B = 0.004256 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.098065 B = 6577.216295 C = 7420.778786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.145 3.855 4 C -0.237 4.237 5 C -0.035 4.035 6 C -0.112 4.112 7 C -0.167 4.167 8 C 0.207 3.793 9 N -0.681 5.681 10 C 0.519 3.481 11 O -0.517 6.517 12 C 0.031 3.969 13 H 0.058 0.942 14 C -0.135 4.135 15 C -0.504 4.504 16 H 0.075 0.925 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.168 4.168 24 C -0.101 4.101 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.150 0.850 33 H 0.408 0.592 34 H 0.096 0.904 35 H 0.012 0.988 36 H 0.033 0.967 37 H 0.262 0.738 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.226 -8.878 2.996 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.229 6.229 3 C 0.100 3.900 4 C -0.257 4.257 5 C -0.036 4.036 6 C -0.169 4.169 7 C -0.188 4.188 8 C 0.109 3.891 9 N -0.325 5.325 10 C 0.310 3.690 11 O -0.391 6.391 12 C 0.010 3.990 13 H 0.075 0.925 14 C -0.193 4.193 15 C -0.542 4.542 16 H 0.093 0.907 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.172 4.172 24 C -0.157 4.157 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.140 0.860 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.167 0.833 33 H 0.245 0.755 34 H 0.115 0.885 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.296 -8.390 2.631 18.517 hybrid contribution 0.302 0.505 -0.203 0.622 sum -15.994 -7.885 2.428 17.997 Atomic orbital electron populations 1.22987 0.78890 1.03405 1.01260 1.86017 1.20871 1.27070 1.88988 1.18349 0.91015 0.83866 0.96804 1.20885 0.99278 0.91765 1.13734 1.19519 0.93471 0.94348 0.96264 1.20774 0.98915 0.95004 1.02176 1.21301 0.92636 0.99228 1.05618 1.17481 0.83924 0.92392 0.95266 1.44186 1.03776 1.22061 1.62509 1.22326 0.92809 0.79154 0.74716 1.90503 1.67225 1.40210 1.41181 1.18931 0.83286 0.97636 0.99156 0.92465 1.21782 1.05382 0.93831 0.98335 1.21113 0.92902 1.02102 1.38104 0.90653 1.24943 0.96446 0.97424 0.95326 1.69865 1.01683 1.36376 1.45532 0.86425 0.77651 0.83426 0.79576 1.20618 1.21257 1.19708 1.18748 0.90975 0.94574 1.12878 1.20477 0.98911 0.94456 1.01889 0.92846 0.92851 0.88617 0.86023 0.91202 0.91021 0.91889 0.83258 0.75517 0.88529 0.96866 0.94760 0.92856 0.91749 0.91180 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.02 9.54 -19.41 -0.19 -4.21 16 3 C 0.15 2.12 6.66 -39.24 -0.26 1.86 16 4 C -0.24 -3.27 8.69 -39.39 -0.34 -3.61 16 5 C -0.04 -0.53 5.87 -104.67 -0.61 -1.15 16 6 C -0.11 -1.35 10.01 36.01 0.36 -0.99 16 7 C -0.17 -3.04 8.37 -39.37 -0.33 -3.37 16 8 C 0.21 3.69 6.41 -83.72 -0.54 3.15 16 9 N -0.68 -12.50 4.91 -9.88 -0.05 -12.55 16 10 C 0.52 11.68 6.95 -10.98 -0.08 11.61 16 11 O -0.52 -13.02 12.62 5.55 0.07 -12.95 16 12 C 0.03 0.75 2.65 -92.92 -0.25 0.51 16 13 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 14 C -0.14 -3.04 8.87 37.16 0.33 -2.71 16 15 C -0.50 -13.99 8.37 -34.44 -0.29 -14.28 16 16 H 0.08 2.20 6.75 -52.48 -0.35 1.85 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 18 N -0.90 -24.71 11.32 55.43 0.63 -24.08 16 19 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.17 -2.64 5.91 -104.29 -0.62 -3.26 16 24 C -0.10 -1.32 9.23 36.00 0.33 -0.99 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.12 1.33 6.29 -52.49 -0.33 1.00 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.90 8.09 -51.92 -0.42 0.48 16 31 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.15 3.04 5.78 -52.48 -0.30 2.74 16 33 H 0.41 6.42 6.67 -40.82 -0.27 6.15 16 34 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 35 H 0.01 0.23 7.46 -51.93 -0.39 -0.15 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.88 7.53 -51.93 -0.39 0.48 16 40 H 0.06 0.82 6.98 -51.92 -0.36 0.46 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -30.83 326.38 -6.63 -37.46 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.60 Total: 5.34 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.39 Total: -10.44 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.58 Total: -36.63 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.12 Total: -17.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.83 -6.63 -37.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597579639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.542 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds