Wall clock time and date at job start Thu Apr 9 2020 15:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35894 * 117.00279 * 2 1 4 4 C 1.38804 * 120.01873 * 359.97438 * 3 2 1 5 5 C 1.38176 * 120.07988 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.93223 * 180.02562 * 5 4 3 7 7 C 1.38159 * 120.12549 * 359.76212 * 5 4 3 8 8 C 1.38888 * 120.04012 * 0.50841 * 7 5 4 9 9 N 1.39922 * 120.04050 * 179.74311 * 8 7 5 10 10 C 1.34781 * 120.00124 * 335.15227 * 9 8 7 11 11 O 1.21285 * 119.99696 * 354.48121 * 10 9 8 12 12 C 1.50702 * 119.99745 * 174.21127 * 10 9 8 13 13 H 1.08998 * 109.46849 * 300.26884 * 12 10 9 14 14 C 1.52997 * 109.47246 * 60.27465 * 12 10 9 15 15 C 1.50703 * 109.46745 * 180.27594 * 12 10 9 16 16 H 1.08003 * 119.99915 * 359.97438 * 15 12 10 17 17 C 1.37878 * 119.99976 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99613 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00104 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47321 * 89.99617 * 19 17 15 21 21 H 1.48497 * 109.47347 * 209.99759 * 19 17 15 22 22 H 1.48499 * 109.47489 * 329.99973 * 19 17 15 23 23 C 1.38586 * 120.01929 * 179.97438 * 3 2 1 24 24 C 1.50697 * 120.06057 * 359.96032 * 23 3 2 25 25 H 1.08997 * 109.47169 * 299.99834 * 1 2 3 26 26 H 1.09004 * 109.46883 * 59.99217 * 1 2 3 27 27 H 1.08991 * 109.47611 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.96002 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.47590 * 90.00070 * 6 5 4 30 30 H 1.09008 * 109.46667 * 209.99770 * 6 5 4 31 31 H 1.08996 * 109.47080 * 329.99181 * 6 5 4 32 32 H 1.08007 * 119.98205 * 180.25807 * 7 5 4 33 33 H 0.97002 * 120.00201 * 155.15374 * 9 8 7 34 34 H 1.09003 * 109.46882 * 179.97438 * 14 12 10 35 35 H 1.08999 * 109.47341 * 299.99558 * 14 12 10 36 36 H 1.09000 * 109.47153 * 59.99933 * 14 12 10 37 37 H 0.97003 * 119.99720 * 179.97438 * 18 17 15 38 38 H 1.08993 * 109.47686 * 270.01867 * 24 23 3 39 39 H 1.09001 * 109.47264 * 30.02398 * 24 23 3 40 40 H 1.09013 * 109.47073 * 150.02011 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2905 2.3752 -0.0005 5 6 1.9165 3.6070 0.0000 6 6 1.0930 4.8691 0.0000 7 6 3.2960 3.6837 0.0060 8 6 4.0570 2.5219 0.0009 9 7 5.4540 2.5997 0.0016 10 6 6.0682 3.6969 -0.4838 11 8 5.4165 4.5729 -1.0119 12 6 7.5639 3.8379 -0.3647 13 1 7.8482 3.8161 0.6873 14 6 8.2453 2.6830 -1.1013 15 6 7.9951 5.1468 -0.9745 16 1 7.2596 5.8100 -1.4056 17 6 9.3286 5.4972 -0.9831 18 7 10.2241 4.6894 -0.4586 19 14 9.8631 7.1193 -1.7396 20 1 9.8470 8.1796 -0.7000 21 1 11.2374 6.9820 -2.2853 22 1 8.9300 7.4861 -2.8350 23 6 3.4300 1.2837 0.0005 24 6 4.2524 0.0210 0.0020 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 0.2120 2.3183 -0.0005 29 1 0.8940 5.1732 1.0277 30 1 1.6401 5.6598 -0.5135 31 1 0.1494 4.6871 -0.5143 32 1 3.7829 4.6478 0.0106 33 1 5.9806 1.8639 0.3513 34 1 9.3271 2.7853 -1.0155 35 1 7.9335 1.7363 -0.6602 36 1 7.9609 2.7048 -2.1533 37 1 11.1623 4.9358 -0.4649 38 1 4.4500 -0.2828 1.0299 39 1 3.7054 -0.7696 -0.5117 40 1 5.1969 0.2019 -0.5113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597579639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:41 Heat of formation + Delta-G solvation = -78.497324 kcal Electronic energy + Delta-G solvation = -21555.268033 eV Core-core repulsion = 18334.245792 eV Total energy + Delta-G solvation = -3221.022241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83098 -40.55416 -38.46661 -36.11391 -35.84835 -33.89435 -32.56723 -30.13719 -30.02290 -28.35693 -27.23994 -25.85306 -24.91112 -23.12180 -21.90197 -21.09591 -18.86537 -18.29948 -18.15629 -17.12108 -16.82119 -16.71146 -16.52194 -16.27093 -15.78700 -15.08697 -14.83248 -14.60216 -14.41935 -14.11644 -13.93794 -13.77108 -13.50363 -13.04683 -12.89024 -12.85744 -12.75618 -12.70702 -12.61339 -12.40548 -12.28642 -12.11642 -12.02667 -11.79364 -11.09008 -11.00434 -10.61038 -10.31371 -9.07431 -8.93265 -8.17235 -6.27882 0.24827 0.46390 1.40743 1.41651 1.53226 1.78990 2.01397 2.42355 2.60361 2.77764 3.13001 3.76871 3.97101 4.04147 4.12477 4.35611 4.39590 4.44974 4.45721 4.57166 4.70726 4.76684 4.78369 4.79647 4.80752 4.82194 4.89801 4.95616 5.03346 5.24099 5.29544 5.39412 5.42068 5.46306 5.66470 5.71941 5.88348 5.97395 6.16152 6.46586 6.59108 6.80494 7.28516 7.42184 8.88821 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028649 B = 0.004256 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.098065 B = 6577.216295 C = 7420.778786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.145 3.855 4 C -0.227 4.227 5 C -0.039 4.039 6 C -0.110 4.110 7 C -0.197 4.197 8 C 0.179 3.821 9 N -0.665 5.665 10 C 0.522 3.478 11 O -0.553 6.553 12 C 0.028 3.972 13 H 0.048 0.952 14 C -0.123 4.123 15 C -0.531 4.531 16 H 0.051 0.949 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.956 3.044 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.279 1.279 23 C -0.174 4.174 24 C -0.099 4.099 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.121 0.879 28 H 0.157 0.843 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.420 0.580 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.148 -10.391 3.239 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.099 3.901 4 C -0.246 4.246 5 C -0.040 4.040 6 C -0.167 4.167 7 C -0.217 4.217 8 C 0.083 3.917 9 N -0.310 5.310 10 C 0.313 3.687 11 O -0.430 6.430 12 C 0.007 3.993 13 H 0.065 0.935 14 C -0.181 4.181 15 C -0.569 4.569 16 H 0.069 0.931 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.782 3.218 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.204 1.204 23 C -0.177 4.177 24 C -0.155 4.155 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.139 0.861 28 H 0.174 0.826 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.259 0.741 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.237 -9.953 2.899 20.977 hybrid contribution 0.730 0.877 -0.236 1.165 sum -17.507 -9.076 2.663 19.899 Atomic orbital electron populations 1.23363 0.76414 1.05598 1.02277 1.86020 1.23356 1.25867 1.88483 1.18476 0.90880 0.84994 0.95732 1.21235 1.00989 0.90715 1.11651 1.19836 0.92489 0.96358 0.95327 1.20830 0.99301 0.93192 1.03365 1.21216 0.94314 0.98107 1.08100 1.17619 0.83155 0.93420 0.97491 1.43755 1.04574 1.21019 1.61650 1.21883 0.92095 0.79886 0.74873 1.90492 1.67622 1.41758 1.43089 1.18845 0.84997 0.97128 0.98377 0.93470 1.21603 1.03650 0.95029 0.97827 1.21255 0.92993 1.03602 1.39059 0.93095 1.25577 0.96319 1.00276 0.95605 1.69941 1.01905 1.37373 1.45649 0.85578 0.77456 0.80060 0.78700 1.19987 1.19937 1.20374 1.18979 0.92111 0.94447 1.12185 1.20519 0.98541 0.93455 1.03001 0.91598 0.91931 0.86061 0.82580 0.89645 0.92464 0.89188 0.86497 0.74117 0.90640 0.92861 0.95666 0.92495 0.90179 0.90344 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.32 -7.18 9.54 -92.36 -0.88 -8.06 16 3 C 0.15 3.91 6.66 22.49 0.15 4.06 16 4 C -0.23 -5.64 8.69 22.39 0.19 -5.45 16 5 C -0.04 -1.15 5.87 -19.90 -0.12 -1.27 16 6 C -0.11 -2.50 10.01 71.24 0.71 -1.79 16 7 C -0.20 -7.35 8.37 22.41 0.19 -7.17 16 8 C 0.18 6.45 6.41 38.14 0.24 6.69 16 9 N -0.66 -24.83 4.91 -303.55 -1.49 -26.32 16 10 C 0.52 24.43 6.95 87.66 0.61 25.04 16 11 O -0.55 -29.42 12.62 -3.04 -0.04 -29.46 16 12 C 0.03 1.39 2.65 -12.29 -0.03 1.36 16 13 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.12 -5.57 8.87 71.98 0.64 -4.93 16 15 C -0.53 -30.56 8.37 25.60 0.21 -30.34 16 16 H 0.05 3.13 6.75 -2.91 -0.02 3.11 16 17 C 0.02 1.21 5.30 84.65 0.45 1.66 16 18 N -0.91 -50.63 11.32 21.45 0.24 -50.39 16 19 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 23 C -0.17 -5.24 5.91 -19.65 -0.12 -5.36 16 24 C -0.10 -2.40 9.23 71.23 0.66 -1.74 16 25 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 26 H 0.06 0.71 7.66 -2.38 -0.02 0.69 16 27 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.16 2.73 6.29 -2.91 -0.02 2.71 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.46 8.09 -2.38 -0.02 1.44 16 31 H 0.09 1.53 8.08 -2.39 -0.02 1.52 16 32 H 0.12 5.12 5.78 -2.91 -0.02 5.10 16 33 H 0.42 13.09 6.67 -92.71 -0.62 12.47 16 34 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 35 H 0.05 1.92 7.46 -2.39 -0.02 1.90 16 36 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.77 7.53 -2.39 -0.02 1.75 16 40 H 0.06 1.51 6.98 -2.38 -0.02 1.49 16 Total: -1.00 -68.76 326.38 5.20 -63.55 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.44 Total: 21.80 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 4.90 Total: -17.90 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -1.25 Total: -76.71 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.92 Total: -37.51 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -68.76 5.20 -63.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597579639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.943 kcal (2) G-P(sol) polarization free energy of solvation -68.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds