Wall clock time and date at job start Thu Apr 9 2020 15:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 117.00117 * 2 1 4 4 C 1.38808 * 120.01905 * 359.97438 * 3 2 1 5 5 C 1.38173 * 120.08561 * 180.02562 * 4 3 2 6 6 C 1.50695 * 119.93994 * 180.02562 * 5 4 3 7 7 C 1.38165 * 120.12041 * 359.97184 * 5 4 3 8 8 C 1.38885 * 120.04573 * 0.02562 * 7 5 4 9 9 N 1.39914 * 120.04680 * 179.97438 * 8 7 5 10 10 C 1.34783 * 120.00051 * 334.44096 * 9 8 7 11 11 O 1.21288 * 119.99511 * 3.96248 * 10 9 8 12 12 C 1.50699 * 119.99968 * 183.95832 * 10 9 8 13 13 H 1.09001 * 109.47058 * 60.00458 * 12 10 9 14 14 C 1.52995 * 109.47283 * 300.00303 * 12 10 9 15 15 C 1.50698 * 109.46750 * 180.02562 * 12 10 9 16 16 H 1.08002 * 120.00527 * 5.28838 * 15 12 10 17 17 C 1.37879 * 119.99845 * 185.28647 * 15 12 10 18 18 N 1.31515 * 120.00030 * 5.12010 * 17 15 12 19 19 Si 1.86803 * 120.00105 * 185.11193 * 17 15 12 20 20 H 1.48502 * 109.47050 * 84.99991 * 19 17 15 21 21 H 1.48499 * 109.47296 * 205.00109 * 19 17 15 22 22 H 1.48504 * 109.46996 * 325.00228 * 19 17 15 23 23 C 1.38583 * 120.01922 * 180.23195 * 3 2 1 24 24 C 1.50694 * 120.06484 * 359.97438 * 23 3 2 25 25 H 1.08997 * 109.47100 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47072 * 300.00744 * 1 2 3 27 27 H 1.09003 * 109.46917 * 59.99768 * 1 2 3 28 28 H 1.07999 * 119.95879 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.46594 * 269.97502 * 6 5 4 30 30 H 1.08998 * 109.47318 * 29.97120 * 6 5 4 31 31 H 1.08998 * 109.47407 * 149.97703 * 6 5 4 32 32 H 1.08004 * 119.97916 * 180.02562 * 7 5 4 33 33 H 0.97003 * 120.00264 * 154.44323 * 9 8 7 34 34 H 1.09004 * 109.47059 * 294.99131 * 14 12 10 35 35 H 1.08993 * 109.47625 * 54.99199 * 14 12 10 36 36 H 1.09004 * 109.46895 * 174.99725 * 14 12 10 37 37 H 0.97001 * 119.99708 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.47465 * 270.23492 * 24 23 3 39 39 H 1.08999 * 109.47012 * 30.23392 * 24 23 3 40 40 H 1.08996 * 109.47133 * 150.23263 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 -0.0005 5 6 1.9163 3.6071 -0.0011 6 6 1.0928 4.8692 -0.0011 7 6 3.2958 3.6839 -0.0005 8 6 4.0569 2.5222 0.0001 9 7 5.4539 2.5999 0.0002 10 6 6.0683 3.6885 -0.5039 11 8 5.4106 4.6310 -0.8915 12 6 7.5724 3.7346 -0.5858 13 1 7.9273 2.9175 -1.2139 14 6 8.1642 3.5929 0.8180 15 6 8.0028 5.0502 -1.1815 16 1 7.2685 5.8136 -1.3926 17 6 9.3342 5.2795 -1.4570 18 7 10.2147 4.3161 -1.2949 19 14 9.8875 6.9584 -2.0609 20 1 10.1216 7.8506 -0.8970 21 1 11.1459 6.8157 -2.8362 22 1 8.8346 7.5437 -2.9294 23 6 3.4299 1.2838 -0.0049 24 6 4.2525 0.0212 -0.0096 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2119 2.3184 -0.0014 29 1 0.8943 5.1734 -1.0288 30 1 0.1489 4.6871 0.5127 31 1 1.6395 5.6598 0.5127 32 1 3.7827 4.6480 -0.0005 33 1 5.9803 1.8703 0.3629 34 1 7.8817 4.4565 1.4202 35 1 7.7818 2.6846 1.2835 36 1 9.2506 3.5370 0.7503 37 1 11.1513 4.4773 -1.4891 38 1 4.4510 -0.2870 1.0170 39 1 3.7050 -0.7671 -0.5262 40 1 5.1964 0.2044 -0.5229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597579641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:45 Heat of formation + Delta-G solvation = -59.688213 kcal Electronic energy + Delta-G solvation = -21542.235290 eV Core-core repulsion = 18322.028673 eV Total energy + Delta-G solvation = -3220.206617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51814 -39.18662 -37.22270 -34.74131 -33.81710 -32.59418 -30.74559 -29.10748 -28.69122 -27.59856 -25.18587 -24.66326 -23.34199 -21.79895 -20.60673 -19.48876 -17.64261 -16.68684 -16.36047 -15.88510 -15.75199 -15.54459 -14.98489 -14.50681 -14.24786 -13.62690 -13.59442 -13.20595 -13.11398 -12.82430 -12.73073 -12.57889 -12.07990 -11.83078 -11.76468 -11.66506 -11.38960 -11.07545 -11.00420 -10.90855 -10.74121 -10.68637 -10.34219 -10.00307 -9.69905 -9.07193 -8.58329 -8.42078 -7.89661 -7.63410 -6.09783 -4.10751 1.47979 1.70579 3.16785 3.32431 3.37914 3.43981 3.46542 3.82782 4.04183 4.44280 4.82818 5.00486 5.04047 5.05468 5.24700 5.26119 5.30180 5.33552 5.57523 5.67966 5.72334 5.76443 5.79900 5.91646 5.94532 6.16216 6.34237 6.43904 6.50147 6.61403 6.68907 6.69780 6.79963 6.90412 7.24533 7.38248 7.53646 7.59333 7.90226 7.97556 8.28990 8.96578 9.00993 9.54292 11.00447 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028236 B = 0.004229 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.412315 B = 6619.775343 C = 7356.493626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.144 3.856 4 C -0.236 4.236 5 C -0.037 4.037 6 C -0.111 4.111 7 C -0.171 4.171 8 C 0.204 3.796 9 N -0.680 5.680 10 C 0.519 3.481 11 O -0.518 6.518 12 C 0.030 3.970 13 H 0.062 0.938 14 C -0.129 4.129 15 C -0.505 4.505 16 H 0.075 0.925 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.167 4.167 24 C -0.101 4.101 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.408 0.592 34 H 0.038 0.962 35 H 0.015 0.985 36 H 0.081 0.919 37 H 0.262 0.738 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.234 -8.098 4.697 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C 0.098 3.902 4 C -0.256 4.256 5 C -0.038 4.038 6 C -0.167 4.167 7 C -0.191 4.191 8 C 0.106 3.894 9 N -0.324 5.324 10 C 0.311 3.689 11 O -0.391 6.391 12 C 0.009 3.991 13 H 0.080 0.920 14 C -0.187 4.187 15 C -0.544 4.544 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.171 4.171 24 C -0.158 4.158 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.139 0.861 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.245 0.755 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.308 -7.604 4.359 18.514 hybrid contribution 0.326 0.510 -0.169 0.629 sum -15.982 -7.094 4.190 17.981 Atomic orbital electron populations 1.22986 0.78907 1.03394 1.01247 1.86018 1.20857 1.27072 1.89012 1.18346 0.91019 0.83863 0.96938 1.20894 0.99265 0.91803 1.13631 1.19559 0.93604 0.94303 0.96325 1.20757 0.98736 0.94880 1.02362 1.21582 0.92595 0.99713 1.05241 1.17516 0.83844 0.92397 0.95615 1.44142 1.03824 1.22922 1.61522 1.22329 0.93025 0.79941 0.73654 1.90455 1.66913 1.35611 1.46171 1.18928 0.83225 1.00885 0.96046 0.91990 1.21726 1.03806 0.97284 0.95915 1.21069 0.93011 0.99275 1.41010 0.90670 1.24944 0.96589 0.97199 0.95292 1.69925 1.02453 1.31704 1.49289 0.86470 0.77891 0.84028 0.78857 1.20529 1.21322 1.19748 1.18769 0.90975 0.94609 1.12736 1.20478 0.98945 0.94456 1.01876 0.88623 0.92869 0.92852 0.86064 0.91082 0.91973 0.91225 0.82489 0.75527 0.94327 0.96597 0.90059 0.92844 0.91783 0.91179 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.04 9.54 -19.43 -0.19 -4.23 16 3 C 0.14 2.11 6.66 -39.24 -0.26 1.85 16 4 C -0.24 -3.26 8.69 -39.39 -0.34 -3.61 16 5 C -0.04 -0.56 5.87 -104.68 -0.61 -1.18 16 6 C -0.11 -1.33 10.01 36.00 0.36 -0.97 16 7 C -0.17 -3.10 8.44 -39.37 -0.33 -3.43 16 8 C 0.20 3.62 6.43 -83.72 -0.54 3.08 16 9 N -0.68 -12.41 4.85 -9.88 -0.05 -12.46 16 10 C 0.52 11.63 7.04 -10.98 -0.08 11.55 16 11 O -0.52 -12.92 12.38 5.55 0.07 -12.85 16 12 C 0.03 0.73 2.52 -92.93 -0.23 0.50 16 13 H 0.06 1.57 8.12 -51.93 -0.42 1.14 16 14 C -0.13 -2.83 8.91 37.16 0.33 -2.50 16 15 C -0.51 -14.00 8.30 -34.44 -0.29 -14.29 16 16 H 0.08 2.19 6.78 -52.49 -0.36 1.83 16 17 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 18 N -0.90 -24.84 11.98 55.43 0.66 -24.18 16 19 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.17 -2.63 5.91 -104.29 -0.62 -3.24 16 24 C -0.10 -1.32 9.22 36.00 0.33 -0.99 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.12 1.34 6.29 -52.49 -0.33 1.01 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.19 16 31 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.16 3.20 5.52 -52.48 -0.29 2.91 16 33 H 0.41 6.37 6.69 -40.82 -0.27 6.09 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.02 0.28 7.34 -51.93 -0.38 -0.10 16 36 H 0.08 1.94 6.83 -51.93 -0.35 1.59 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.88 7.54 -51.93 -0.39 0.49 16 40 H 0.06 0.83 7.00 -51.93 -0.36 0.46 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -30.85 327.18 -6.60 -37.45 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.62 Total: 5.23 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.38 Total: -10.41 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.62 Total: -36.63 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.12 Total: -17.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.85 -6.60 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597579641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.239 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds