Wall clock time and date at job start Thu Apr 9 2020 15:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 117.00117 * 2 1 4 4 C 1.38808 * 120.01905 * 359.97438 * 3 2 1 5 5 C 1.38173 * 120.08561 * 180.02562 * 4 3 2 6 6 C 1.50695 * 119.93994 * 180.02562 * 5 4 3 7 7 C 1.38165 * 120.12041 * 359.97184 * 5 4 3 8 8 C 1.38885 * 120.04573 * 0.02562 * 7 5 4 9 9 N 1.39914 * 120.04680 * 179.97438 * 8 7 5 10 10 C 1.34783 * 120.00051 * 334.44096 * 9 8 7 11 11 O 1.21288 * 119.99511 * 3.96248 * 10 9 8 12 12 C 1.50699 * 119.99968 * 183.95832 * 10 9 8 13 13 H 1.09001 * 109.47058 * 60.00458 * 12 10 9 14 14 C 1.52995 * 109.47283 * 300.00303 * 12 10 9 15 15 C 1.50698 * 109.46750 * 180.02562 * 12 10 9 16 16 H 1.08002 * 120.00527 * 5.28838 * 15 12 10 17 17 C 1.37879 * 119.99845 * 185.28647 * 15 12 10 18 18 N 1.31515 * 120.00030 * 5.12010 * 17 15 12 19 19 Si 1.86803 * 120.00105 * 185.11193 * 17 15 12 20 20 H 1.48502 * 109.47050 * 84.99991 * 19 17 15 21 21 H 1.48499 * 109.47296 * 205.00109 * 19 17 15 22 22 H 1.48504 * 109.46996 * 325.00228 * 19 17 15 23 23 C 1.38583 * 120.01922 * 180.23195 * 3 2 1 24 24 C 1.50694 * 120.06484 * 359.97438 * 23 3 2 25 25 H 1.08997 * 109.47100 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47072 * 300.00744 * 1 2 3 27 27 H 1.09003 * 109.46917 * 59.99768 * 1 2 3 28 28 H 1.07999 * 119.95879 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.46594 * 269.97502 * 6 5 4 30 30 H 1.08998 * 109.47318 * 29.97120 * 6 5 4 31 31 H 1.08998 * 109.47407 * 149.97703 * 6 5 4 32 32 H 1.08004 * 119.97916 * 180.02562 * 7 5 4 33 33 H 0.97003 * 120.00264 * 154.44323 * 9 8 7 34 34 H 1.09004 * 109.47059 * 294.99131 * 14 12 10 35 35 H 1.08993 * 109.47625 * 54.99199 * 14 12 10 36 36 H 1.09004 * 109.46895 * 174.99725 * 14 12 10 37 37 H 0.97001 * 119.99708 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.47465 * 270.23492 * 24 23 3 39 39 H 1.08999 * 109.47012 * 30.23392 * 24 23 3 40 40 H 1.08996 * 109.47133 * 150.23263 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 -0.0005 5 6 1.9163 3.6071 -0.0011 6 6 1.0928 4.8692 -0.0011 7 6 3.2958 3.6839 -0.0005 8 6 4.0569 2.5222 0.0001 9 7 5.4539 2.5999 0.0002 10 6 6.0683 3.6885 -0.5039 11 8 5.4106 4.6310 -0.8915 12 6 7.5724 3.7346 -0.5858 13 1 7.9273 2.9175 -1.2139 14 6 8.1642 3.5929 0.8180 15 6 8.0028 5.0502 -1.1815 16 1 7.2685 5.8136 -1.3926 17 6 9.3342 5.2795 -1.4570 18 7 10.2147 4.3161 -1.2949 19 14 9.8875 6.9584 -2.0609 20 1 10.1216 7.8506 -0.8970 21 1 11.1459 6.8157 -2.8362 22 1 8.8346 7.5437 -2.9294 23 6 3.4299 1.2838 -0.0049 24 6 4.2525 0.0212 -0.0096 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2119 2.3184 -0.0014 29 1 0.8943 5.1734 -1.0288 30 1 0.1489 4.6871 0.5127 31 1 1.6395 5.6598 0.5127 32 1 3.7827 4.6480 -0.0005 33 1 5.9803 1.8703 0.3629 34 1 7.8817 4.4565 1.4202 35 1 7.7818 2.6846 1.2835 36 1 9.2506 3.5370 0.7503 37 1 11.1513 4.4773 -1.4891 38 1 4.4510 -0.2870 1.0170 39 1 3.7050 -0.7671 -0.5262 40 1 5.1964 0.2044 -0.5229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597579641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:44 Heat of formation + Delta-G solvation = -78.164215 kcal Electronic energy + Delta-G solvation = -21543.036470 eV Core-core repulsion = 18322.028673 eV Total energy + Delta-G solvation = -3221.007796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.83054 -40.55211 -38.45263 -36.11229 -35.80203 -33.89127 -32.62617 -30.13228 -30.03025 -28.35432 -27.20796 -25.83888 -24.92439 -23.16391 -21.86898 -21.09471 -18.86211 -18.29454 -18.15296 -17.16860 -16.85173 -16.70985 -16.46032 -16.36661 -15.63867 -15.02427 -14.80930 -14.66373 -14.45301 -14.10830 -13.90783 -13.74250 -13.60172 -13.01252 -12.86764 -12.85715 -12.79278 -12.70447 -12.60492 -12.50972 -12.31824 -12.10010 -11.99074 -11.77348 -11.10627 -10.98909 -10.56462 -10.28153 -9.06365 -8.94332 -8.19651 -6.26984 0.25391 0.47985 1.41234 1.41662 1.52512 1.78617 2.02213 2.42622 2.60595 2.77735 3.13424 3.77719 3.97624 4.04323 4.13902 4.36320 4.39779 4.45423 4.46001 4.57946 4.70559 4.76889 4.78303 4.80854 4.81695 4.82326 4.86403 4.93846 5.04223 5.24153 5.29692 5.39723 5.41511 5.48468 5.67289 5.71365 5.81885 5.97786 6.12571 6.47017 6.60198 6.81679 7.29390 7.42445 8.89395 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028236 B = 0.004229 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.412315 B = 6619.775343 C = 7356.493626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.144 3.856 4 C -0.226 4.226 5 C -0.041 4.041 6 C -0.110 4.110 7 C -0.200 4.200 8 C 0.177 3.823 9 N -0.664 5.664 10 C 0.521 3.479 11 O -0.552 6.552 12 C 0.027 3.973 13 H 0.049 0.951 14 C -0.117 4.117 15 C -0.530 4.530 16 H 0.051 0.949 17 C 0.023 3.977 18 N -0.912 5.912 19 Si 0.955 3.045 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.279 1.279 23 C -0.173 4.173 24 C -0.099 4.099 25 H 0.121 0.879 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.156 0.844 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.420 0.580 34 H 0.030 0.970 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.266 0.734 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.184 -9.398 5.233 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.098 3.902 4 C -0.245 4.245 5 C -0.042 4.042 6 C -0.166 4.166 7 C -0.220 4.220 8 C 0.081 3.919 9 N -0.308 5.308 10 C 0.312 3.688 11 O -0.429 6.429 12 C 0.006 3.994 13 H 0.067 0.933 14 C -0.175 4.175 15 C -0.569 4.569 16 H 0.070 0.930 17 C -0.177 4.177 18 N -0.550 5.550 19 Si 0.780 3.220 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.204 1.204 23 C -0.177 4.177 24 C -0.155 4.155 25 H 0.139 0.861 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.173 0.827 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.259 0.741 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.279 -8.953 4.918 20.939 hybrid contribution 0.760 0.803 -0.328 1.153 sum -17.519 -8.150 4.591 19.860 Atomic orbital electron populations 1.23361 0.76438 1.05579 1.02259 1.86020 1.23339 1.25897 1.88518 1.18475 0.90888 0.84986 0.95889 1.21243 1.00962 0.90775 1.11569 1.19872 0.92645 0.96289 0.95404 1.20818 0.99442 0.93292 1.03056 1.21479 0.94256 0.98636 1.07650 1.17648 0.83102 0.93400 0.97789 1.43714 1.04600 1.21873 1.60659 1.21889 0.92306 0.80624 0.73936 1.90453 1.67302 1.37139 1.47979 1.18837 0.84882 0.98824 0.96835 0.93303 1.21547 1.02334 0.98901 0.94687 1.21225 0.93086 1.00420 1.42143 0.93029 1.25578 0.96498 1.00277 0.95360 1.69992 1.02669 1.32914 1.49472 0.85621 0.77475 0.80358 0.78519 1.19757 1.20146 1.20373 1.18996 0.92097 0.94491 1.12101 1.20516 0.98527 0.93484 1.03002 0.86077 0.91594 0.91967 0.82657 0.90513 0.88943 0.91971 0.85590 0.74120 0.95069 0.92650 0.92025 0.92525 0.90145 0.90410 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -7.24 9.54 -92.43 -0.88 -8.13 16 3 C 0.14 3.88 6.66 22.49 0.15 4.03 16 4 C -0.23 -5.64 8.69 22.39 0.19 -5.45 16 5 C -0.04 -1.21 5.87 -19.90 -0.12 -1.33 16 6 C -0.11 -2.48 10.01 71.23 0.71 -1.76 16 7 C -0.20 -7.42 8.44 22.41 0.19 -7.23 16 8 C 0.18 6.33 6.43 38.14 0.25 6.57 16 9 N -0.66 -24.59 4.85 -303.54 -1.47 -26.07 16 10 C 0.52 24.24 7.04 87.66 0.62 24.86 16 11 O -0.55 -29.06 12.38 -3.05 -0.04 -29.10 16 12 C 0.03 1.37 2.52 -12.29 -0.03 1.34 16 13 H 0.05 2.55 8.12 -2.39 -0.02 2.53 16 14 C -0.12 -5.16 8.91 71.98 0.64 -4.52 16 15 C -0.53 -30.43 8.30 25.60 0.21 -30.22 16 16 H 0.05 3.15 6.78 -2.91 -0.02 3.13 16 17 C 0.02 1.25 5.29 84.66 0.45 1.70 16 18 N -0.91 -51.10 11.98 21.45 0.26 -50.84 16 19 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 C -0.17 -5.24 5.91 -19.65 -0.12 -5.36 16 24 C -0.10 -2.42 9.22 71.23 0.66 -1.76 16 25 H 0.12 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.07 0.71 7.66 -2.38 -0.02 0.69 16 27 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 28 H 0.16 2.74 6.29 -2.91 -0.02 2.72 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.51 8.08 -2.39 -0.02 1.49 16 31 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 32 H 0.13 5.48 5.52 -2.91 -0.02 5.46 16 33 H 0.42 12.97 6.69 -92.71 -0.62 12.35 16 34 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.95 7.34 -2.39 -0.02 1.94 16 36 H 0.06 2.97 6.83 -2.39 -0.02 2.95 16 37 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.78 7.54 -2.39 -0.02 1.76 16 40 H 0.06 1.52 7.00 -2.39 -0.02 1.50 16 Total: -1.00 -68.60 327.18 5.24 -63.36 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.44 Total: 21.82 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 4.91 Total: -17.79 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.22 Total: -76.91 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.92 Total: -37.23 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -68.60 5.24 -63.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597579641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.804 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds