Wall clock time and date at job start Thu Apr 9 2020 15:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00144 * 2 1 4 4 C 1.38630 * 120.01653 * 0.02562 * 3 2 1 5 5 C 1.38756 * 119.87110 * 179.97438 * 4 3 2 6 6 N 1.39925 * 120.04238 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99821 * 335.15273 * 6 5 4 8 8 O 1.21288 * 120.00029 * 354.48051 * 7 6 5 9 9 C 1.50695 * 119.99695 * 174.47973 * 7 6 5 10 10 H 1.08996 * 109.47352 * 300.00171 * 9 7 6 11 11 C 1.52999 * 109.47001 * 60.00128 * 9 7 6 12 12 C 1.50700 * 109.46882 * 179.97438 * 9 7 6 13 13 H 1.08000 * 119.99917 * 0.02562 * 12 9 7 14 14 C 1.37883 * 120.00175 * 180.02562 * 12 9 7 15 15 N 1.31518 * 119.99434 * 359.97438 * 14 12 9 16 16 Si 1.86791 * 120.00257 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47222 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47324 * 119.99712 * 16 14 12 19 19 H 1.48502 * 109.47288 * 239.99887 * 16 14 12 20 20 C 1.38936 * 119.91580 * 0.25449 * 5 4 3 21 21 C 1.50707 * 119.97772 * 179.74434 * 20 5 4 22 22 C 1.38115 * 120.04146 * 359.50997 * 20 5 4 23 23 C 1.38219 * 120.12387 * 0.47074 * 22 20 5 24 24 C 1.50699 * 119.95984 * 179.76713 * 23 22 20 25 25 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46930 * 299.99973 * 1 2 3 27 27 H 1.08997 * 109.46803 * 59.99814 * 1 2 3 28 28 H 1.07996 * 120.06449 * 359.95409 * 4 3 2 29 29 H 0.96996 * 119.99957 * 155.14531 * 6 5 4 30 30 H 1.09003 * 109.47690 * 59.99810 * 11 9 7 31 31 H 1.09006 * 109.47278 * 299.99772 * 11 9 7 32 32 H 1.09001 * 109.47271 * 179.97438 * 11 9 7 33 33 H 0.97004 * 119.99287 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.46744 * 89.99983 * 21 20 5 35 35 H 1.08999 * 109.46992 * 209.99806 * 21 20 5 36 36 H 1.08999 * 109.47190 * 330.00454 * 21 20 5 37 37 H 1.08000 * 119.93753 * 180.21035 * 22 20 5 38 38 H 1.09000 * 109.46750 * 270.01933 * 24 23 22 39 39 H 1.08998 * 109.46974 * 30.01316 * 24 23 22 40 40 H 1.08995 * 109.47393 * 150.01725 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3737 0.0005 5 6 1.9245 3.6084 0.0011 6 7 1.1663 4.7844 0.0011 7 6 -0.0889 4.7770 -0.4899 8 8 -0.5259 3.7787 -1.0223 9 6 -0.9493 6.0090 -0.3772 10 1 -1.0792 6.2667 0.6738 11 6 -0.2737 7.1714 -1.1075 12 6 -2.2954 5.7402 -0.9992 13 1 -2.5068 4.7737 -1.4323 14 6 -3.2571 6.7281 -1.0153 15 7 -2.9997 7.9049 -0.4874 16 14 -4.9258 6.3947 -1.7855 17 1 -4.9625 5.0038 -2.3047 18 1 -5.9873 6.5696 -0.7620 19 1 -5.1542 7.3458 -2.9029 20 6 3.3122 3.6755 -0.0043 21 6 4.0013 5.0158 -0.0095 22 6 4.0606 2.5147 0.0001 23 6 3.4318 1.2839 0.0000 24 6 4.2520 0.0197 -0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2128 2.3187 0.0002 29 1 1.5440 5.6050 0.3545 30 1 -0.1437 6.9138 -2.1587 31 1 0.7002 7.3660 -0.6581 32 1 -0.8962 8.0625 -1.0264 33 1 -3.6765 8.5998 -0.4985 34 1 4.1712 5.3410 1.0169 35 1 4.9570 4.9310 -0.5268 36 1 3.3739 5.7449 -0.5224 37 1 5.1393 2.5689 -0.0006 38 1 4.4497 -0.2846 -1.0283 39 1 5.1964 0.1991 0.5133 40 1 3.7032 -0.7697 0.5130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597599841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:50 Heat of formation + Delta-G solvation = -61.473767 kcal Electronic energy + Delta-G solvation = -21728.760051 eV Core-core repulsion = 18508.476007 eV Total energy + Delta-G solvation = -3220.284044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51080 -39.01855 -37.39868 -34.50358 -33.91036 -32.11400 -31.27795 -30.15441 -27.71977 -26.75288 -25.51452 -25.20577 -22.94009 -21.91205 -20.41695 -19.49280 -18.20167 -16.61466 -16.26405 -15.74766 -15.55918 -15.25138 -14.78793 -14.51382 -14.27199 -13.66263 -13.64614 -13.44142 -13.07740 -13.03447 -12.67561 -12.47610 -11.96566 -11.83532 -11.70491 -11.63375 -11.27125 -11.09200 -11.00386 -10.91547 -10.73102 -10.64399 -10.37013 -10.04871 -9.66798 -9.07241 -8.75019 -8.43152 -8.09167 -7.42898 -6.11681 -4.15555 1.55045 1.62148 3.27181 3.35141 3.41356 3.41997 3.46589 3.68638 4.03737 4.40445 4.91942 5.12954 5.15239 5.22044 5.25578 5.38489 5.41346 5.50895 5.59455 5.68112 5.71323 5.75894 5.78232 5.96178 5.97706 6.09937 6.22571 6.41055 6.50835 6.65294 6.67588 6.71113 6.79891 6.84121 7.17959 7.35269 7.60488 7.65919 7.86297 8.00150 8.25750 8.92055 8.96467 9.50425 10.95978 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.004825 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.719253 B = 5801.180258 C = 6901.034869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.140 3.860 4 C -0.220 4.220 5 C 0.200 3.800 6 N -0.682 5.682 7 C 0.518 3.482 8 O -0.521 6.521 9 C 0.030 3.970 10 H 0.057 0.943 11 C -0.135 4.135 12 C -0.503 4.503 13 H 0.075 0.925 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.901 3.099 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.164 4.164 21 C -0.107 4.107 22 C -0.064 4.064 23 C -0.150 4.150 24 C -0.096 4.096 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.157 0.843 29 H 0.409 0.591 30 H 0.033 0.967 31 H 0.012 0.988 32 H 0.096 0.904 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.126 0.874 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.229 -8.681 3.057 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.095 3.905 4 C -0.241 4.241 5 C 0.103 3.897 6 N -0.327 5.327 7 C 0.310 3.690 8 O -0.396 6.396 9 C 0.009 3.991 10 H 0.075 0.925 11 C -0.193 4.193 12 C -0.542 4.542 13 H 0.093 0.907 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.167 4.167 21 C -0.164 4.164 22 C -0.083 4.083 23 C -0.152 4.152 24 C -0.152 4.152 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.174 0.826 29 H 0.245 0.755 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.790 -9.354 2.695 16.073 hybrid contribution -0.988 0.569 -0.225 1.162 sum 11.803 -8.785 2.470 14.919 Atomic orbital electron populations 1.23055 0.78179 1.03289 1.02313 1.85982 1.21506 1.26828 1.88759 1.18642 0.91392 0.84063 0.96445 1.21546 1.02306 0.90412 1.09831 1.17506 0.89713 0.86680 0.95782 1.44190 1.15719 1.10471 1.62278 1.22323 0.79906 0.92121 0.74656 1.90481 1.72109 1.35633 1.41344 1.18936 0.93480 0.87503 0.99166 0.92508 1.21781 0.97024 1.02176 0.98306 1.21139 0.95524 0.99798 1.37716 0.90655 1.24948 0.98947 0.94929 0.95327 1.69875 1.34408 1.03691 1.45421 0.86380 0.83329 0.78553 0.78902 1.19560 1.20980 1.20971 1.19486 0.91520 0.96121 1.09564 1.20623 1.00178 0.93691 1.01871 1.20415 0.98930 0.90120 0.98802 1.19066 0.90486 0.95880 1.09736 1.20488 0.98343 0.94711 1.01691 0.88620 0.92708 0.91921 0.82603 0.75509 0.94773 0.96896 0.88519 0.92887 0.91642 0.91556 0.91777 0.85572 0.92048 0.92234 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -4.88 9.53 -19.41 -0.19 -5.06 16 3 C 0.14 2.31 6.66 -39.24 -0.26 2.05 16 4 C -0.22 -4.04 7.70 -39.25 -0.30 -4.34 16 5 C 0.20 3.51 6.41 -83.71 -0.54 2.97 16 6 N -0.68 -12.30 4.89 -9.87 -0.05 -12.35 16 7 C 0.52 11.55 6.95 -10.99 -0.08 11.47 16 8 O -0.52 -12.96 12.62 5.55 0.07 -12.89 16 9 C 0.03 0.73 2.65 -92.93 -0.25 0.48 16 10 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 11 C -0.13 -2.99 8.86 37.16 0.33 -2.66 16 12 C -0.50 -13.84 8.37 -34.44 -0.29 -14.13 16 13 H 0.08 2.18 6.75 -52.49 -0.35 1.83 16 14 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 15 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 16 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.16 -2.38 5.90 -104.41 -0.62 -2.99 16 21 C -0.11 -1.21 9.44 36.01 0.34 -0.87 16 22 C -0.06 -0.85 9.34 -39.63 -0.37 -1.22 16 23 C -0.15 -2.15 5.90 -104.44 -0.62 -2.77 16 24 C -0.10 -1.08 9.79 36.01 0.35 -0.73 16 25 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 27 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 28 H 0.16 3.14 4.03 -52.49 -0.21 2.93 16 29 H 0.41 6.25 6.68 -40.82 -0.27 5.98 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.01 0.22 7.45 -51.93 -0.39 -0.16 16 32 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 36 H 0.06 0.76 6.99 -51.93 -0.36 0.40 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 40 H 0.06 0.76 7.52 -51.93 -0.39 0.37 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -30.46 326.37 -6.63 -37.09 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.60 Total: 5.73 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -1.39 Total: -9.89 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.58 Total: -36.22 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.11 Total: -17.96 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.46 -6.63 -37.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597599841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.385 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds