Wall clock time and date at job start Thu Apr 9 2020 15:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00144 * 2 1 4 4 C 1.38630 * 120.01653 * 0.02562 * 3 2 1 5 5 C 1.38756 * 119.87110 * 179.97438 * 4 3 2 6 6 N 1.39925 * 120.04238 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99821 * 335.15273 * 6 5 4 8 8 O 1.21288 * 120.00029 * 354.48051 * 7 6 5 9 9 C 1.50695 * 119.99695 * 174.47973 * 7 6 5 10 10 H 1.08996 * 109.47352 * 300.00171 * 9 7 6 11 11 C 1.52999 * 109.47001 * 60.00128 * 9 7 6 12 12 C 1.50700 * 109.46882 * 179.97438 * 9 7 6 13 13 H 1.08000 * 119.99917 * 0.02562 * 12 9 7 14 14 C 1.37883 * 120.00175 * 180.02562 * 12 9 7 15 15 N 1.31518 * 119.99434 * 359.97438 * 14 12 9 16 16 Si 1.86791 * 120.00257 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47222 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47324 * 119.99712 * 16 14 12 19 19 H 1.48502 * 109.47288 * 239.99887 * 16 14 12 20 20 C 1.38936 * 119.91580 * 0.25449 * 5 4 3 21 21 C 1.50707 * 119.97772 * 179.74434 * 20 5 4 22 22 C 1.38115 * 120.04146 * 359.50997 * 20 5 4 23 23 C 1.38219 * 120.12387 * 0.47074 * 22 20 5 24 24 C 1.50699 * 119.95984 * 179.76713 * 23 22 20 25 25 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46930 * 299.99973 * 1 2 3 27 27 H 1.08997 * 109.46803 * 59.99814 * 1 2 3 28 28 H 1.07996 * 120.06449 * 359.95409 * 4 3 2 29 29 H 0.96996 * 119.99957 * 155.14531 * 6 5 4 30 30 H 1.09003 * 109.47690 * 59.99810 * 11 9 7 31 31 H 1.09006 * 109.47278 * 299.99772 * 11 9 7 32 32 H 1.09001 * 109.47271 * 179.97438 * 11 9 7 33 33 H 0.97004 * 119.99287 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.46744 * 89.99983 * 21 20 5 35 35 H 1.08999 * 109.46992 * 209.99806 * 21 20 5 36 36 H 1.08999 * 109.47190 * 330.00454 * 21 20 5 37 37 H 1.08000 * 119.93753 * 180.21035 * 22 20 5 38 38 H 1.09000 * 109.46750 * 270.01933 * 24 23 22 39 39 H 1.08998 * 109.46974 * 30.01316 * 24 23 22 40 40 H 1.08995 * 109.47393 * 150.01725 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3737 0.0005 5 6 1.9245 3.6084 0.0011 6 7 1.1663 4.7844 0.0011 7 6 -0.0889 4.7770 -0.4899 8 8 -0.5259 3.7787 -1.0223 9 6 -0.9493 6.0090 -0.3772 10 1 -1.0792 6.2667 0.6738 11 6 -0.2737 7.1714 -1.1075 12 6 -2.2954 5.7402 -0.9992 13 1 -2.5068 4.7737 -1.4323 14 6 -3.2571 6.7281 -1.0153 15 7 -2.9997 7.9049 -0.4874 16 14 -4.9258 6.3947 -1.7855 17 1 -4.9625 5.0038 -2.3047 18 1 -5.9873 6.5696 -0.7620 19 1 -5.1542 7.3458 -2.9029 20 6 3.3122 3.6755 -0.0043 21 6 4.0013 5.0158 -0.0095 22 6 4.0606 2.5147 0.0001 23 6 3.4318 1.2839 0.0000 24 6 4.2520 0.0197 -0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2128 2.3187 0.0002 29 1 1.5440 5.6050 0.3545 30 1 -0.1437 6.9138 -2.1587 31 1 0.7002 7.3660 -0.6581 32 1 -0.8962 8.0625 -1.0264 33 1 -3.6765 8.5998 -0.4985 34 1 4.1712 5.3410 1.0169 35 1 4.9570 4.9310 -0.5268 36 1 3.3739 5.7449 -0.5224 37 1 5.1393 2.5689 -0.0006 38 1 4.4497 -0.2846 -1.0283 39 1 5.1964 0.1991 0.5133 40 1 3.7032 -0.7697 0.5130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597599841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:50 Heat of formation + Delta-G solvation = -79.709919 kcal Electronic energy + Delta-G solvation = -21729.550830 eV Core-core repulsion = 18508.476007 eV Total energy + Delta-G solvation = -3221.074823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.85932 -40.46876 -38.67244 -35.94060 -35.84800 -33.37375 -32.76830 -31.74017 -28.81193 -27.78769 -27.27825 -26.68845 -24.57586 -23.25611 -21.59003 -21.11809 -19.54623 -18.39952 -17.95104 -17.21535 -16.81417 -16.60660 -16.38157 -16.15685 -15.66056 -15.14474 -14.81598 -14.68536 -14.43445 -14.38305 -13.96072 -13.54405 -13.44077 -13.02433 -12.95985 -12.88526 -12.75785 -12.75007 -12.61065 -12.33118 -12.26509 -12.06786 -12.05355 -12.03430 -11.09754 -10.96405 -10.62931 -10.33214 -9.38134 -8.65623 -8.19422 -6.29953 0.28874 0.44093 1.37361 1.39903 1.52421 1.77008 2.15991 2.35581 2.44631 2.78650 3.10806 3.83623 4.00349 4.06454 4.09631 4.24458 4.27357 4.38835 4.53669 4.61612 4.67354 4.68369 4.76539 4.85967 4.87617 4.89442 4.92384 4.94516 5.13047 5.20094 5.33286 5.42742 5.50929 5.54639 5.58514 5.70264 5.88934 5.92456 6.14433 6.39570 6.57918 6.78591 7.26958 7.40334 8.86731 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.004825 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.719253 B = 5801.180258 C = 6901.034869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.119 3.881 4 C -0.243 4.243 5 C 0.165 3.835 6 N -0.665 5.665 7 C 0.520 3.480 8 O -0.557 6.557 9 C 0.027 3.973 10 H 0.047 0.953 11 C -0.122 4.122 12 C -0.529 4.529 13 H 0.049 0.951 14 C 0.022 3.978 15 N -0.909 5.909 16 Si 0.955 3.045 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.154 4.154 21 C -0.107 4.107 22 C -0.059 4.059 23 C -0.147 4.147 24 C -0.094 4.094 25 H 0.131 0.869 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.127 0.873 29 H 0.421 0.579 30 H 0.024 0.976 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.266 0.734 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.169 0.831 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.849 -8.806 3.323 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.073 3.927 4 C -0.264 4.264 5 C 0.070 3.930 6 N -0.310 5.310 7 C 0.311 3.689 8 O -0.435 6.435 9 C 0.006 3.994 10 H 0.064 0.936 11 C -0.180 4.180 12 C -0.568 4.568 13 H 0.068 0.932 14 C -0.177 4.177 15 N -0.548 5.548 16 Si 0.781 3.219 17 H -0.205 1.205 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.157 4.157 21 C -0.164 4.164 22 C -0.078 4.078 23 C -0.148 4.148 24 C -0.150 4.150 25 H 0.149 0.851 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.145 0.855 29 H 0.260 0.740 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.186 0.814 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.453 -9.463 2.985 18.364 hybrid contribution -1.712 0.542 -0.268 1.815 sum 13.741 -8.921 2.717 16.607 Atomic orbital electron populations 1.23139 0.77534 1.05067 1.00907 1.85966 1.22157 1.26493 1.88810 1.18921 0.92539 0.83689 0.97518 1.21464 1.01324 0.92047 1.11607 1.17751 0.91105 0.85749 0.98431 1.43759 1.14327 1.11544 1.61359 1.21894 0.81165 0.90947 0.74880 1.90475 1.73274 1.36435 1.43268 1.18848 0.93045 0.89182 0.98336 0.93557 1.21598 0.98502 1.00122 0.97807 1.21263 0.97837 0.99027 1.38653 0.93231 1.25568 1.01750 0.94779 0.95647 1.69946 1.35320 1.03984 1.45548 0.85541 0.79894 0.77922 0.78523 1.20515 1.19939 1.19917 1.19892 0.90116 0.98397 1.07308 1.20731 1.00771 0.91469 1.03430 1.20918 1.00877 0.88966 0.96999 1.19592 0.89757 0.97905 1.07591 1.20557 0.98946 0.92920 1.02595 0.85103 0.93395 0.94159 0.85488 0.73975 0.95707 0.92758 0.90676 0.92491 0.89659 0.89029 0.92455 0.81390 0.91159 0.89354 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 9.81 113.37 1.11 1.90 16 2 O -0.32 -9.95 9.53 -92.37 -0.88 -10.83 16 3 C 0.12 3.93 6.66 22.49 0.15 4.08 16 4 C -0.24 -9.27 7.70 22.49 0.17 -9.10 16 5 C 0.17 5.77 6.41 38.14 0.24 6.01 16 6 N -0.66 -24.11 4.89 -303.54 -1.49 -25.60 16 7 C 0.52 24.05 6.95 87.65 0.61 24.66 16 8 O -0.56 -29.41 12.62 -3.05 -0.04 -29.45 16 9 C 0.03 1.34 2.65 -12.29 -0.03 1.31 16 10 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 11 C -0.12 -5.44 8.86 71.98 0.64 -4.80 16 12 C -0.53 -30.24 8.37 25.60 0.21 -30.02 16 13 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 14 C 0.02 1.22 5.30 84.66 0.45 1.67 16 15 N -0.91 -50.15 11.32 21.45 0.24 -49.91 16 16 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 C -0.15 -4.09 5.90 -19.72 -0.12 -4.21 16 21 C -0.11 -2.04 9.44 71.24 0.67 -1.37 16 22 C -0.06 -1.36 9.34 22.24 0.21 -1.16 16 23 C -0.15 -3.89 5.90 -19.74 -0.12 -4.00 16 24 C -0.09 -1.82 9.79 71.24 0.70 -1.12 16 25 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.05 1.37 7.66 -2.39 -0.02 1.36 16 27 H 0.04 1.29 7.66 -2.39 -0.02 1.27 16 28 H 0.13 5.55 4.03 -2.91 -0.01 5.54 16 29 H 0.42 12.50 6.68 -92.71 -0.62 11.88 16 30 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.90 7.45 -2.38 -0.02 1.89 16 32 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 33 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 36 H 0.06 1.18 6.99 -2.39 -0.02 1.17 16 37 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 40 H 0.06 1.25 7.52 -2.39 -0.02 1.24 16 Total: -1.00 -68.74 326.37 5.20 -63.54 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.44 Total: 21.91 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.90 Total: -16.15 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -1.24 Total: -75.51 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.92 Total: -40.28 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -68.74 5.20 -63.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597599841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.172 kcal (2) G-P(sol) polarization free energy of solvation -68.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds