Wall clock time and date at job start Thu Apr 9 2020 15:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41378 * 126.58696 * 2 1 4 4 C 1.34511 * 106.84528 * 180.23913 * 3 2 1 5 5 O 1.34302 * 108.41900 * 359.76447 * 4 3 2 6 6 C 1.34298 * 109.47788 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.79302 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46749 * 270.02412 * 7 6 5 9 9 O 1.21282 * 120.00107 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99582 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99750 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.53509 * 327.61542 * 11 10 8 13 13 C 1.54463 * 110.65957 * 90.24214 * 11 10 8 14 14 C 1.53877 * 106.68421 * 142.05289 * 13 11 10 15 15 C 1.54265 * 106.59605 * 0.15594 * 14 13 11 16 16 H 1.09004 * 110.59809 * 95.12740 * 15 14 13 17 17 C 1.50701 * 110.48496 * 217.70899 * 15 14 13 18 18 H 1.08007 * 119.99597 * 114.77641 * 17 15 14 19 19 C 1.37869 * 120.00267 * 294.77624 * 17 15 14 20 20 N 1.31511 * 120.00107 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 120.00208 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46627 * 60.00028 * 21 19 17 23 23 H 1.48498 * 109.47465 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47046 * 300.00861 * 21 19 17 25 25 C 1.54887 * 104.20056 * 336.39127 * 15 14 13 26 26 H 1.09001 * 109.47151 * 270.16739 * 1 2 3 27 27 H 1.09003 * 109.46925 * 30.16066 * 1 2 3 28 28 H 1.09000 * 109.47240 * 150.16362 * 1 2 3 29 29 H 1.08001 * 126.57668 * 359.97438 * 3 2 1 30 30 H 1.07995 * 125.79058 * 179.75480 * 4 3 2 31 31 H 1.08992 * 109.47128 * 150.02227 * 7 6 5 32 32 H 1.09001 * 109.46449 * 30.02010 * 7 6 5 33 33 H 0.97002 * 120.00353 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.85715 * 22.81084 * 13 11 10 35 35 H 1.09003 * 110.15968 * 261.45715 * 13 11 10 36 36 H 1.08995 * 110.02951 * 240.87549 * 14 13 11 37 37 H 1.08998 * 110.07557 * 119.46051 * 14 13 11 38 38 H 0.97007 * 120.00152 * 180.02562 * 20 19 17 39 39 H 1.09002 * 110.75856 * 156.25785 * 25 15 14 40 40 H 1.09006 * 110.75640 * 279.44771 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1352 0.0000 4 6 3.6157 0.6809 -0.0054 5 8 3.5847 -0.6618 -0.0034 6 6 2.3086 -1.0803 0.0027 7 6 1.8520 -2.5165 0.0061 8 6 1.6941 -2.9967 -1.4136 9 8 1.9296 -2.2467 -2.3372 10 7 1.2921 -4.2599 -1.6569 11 6 1.1391 -4.7270 -3.0370 12 1 0.8230 -3.9091 -3.6846 13 6 2.4580 -5.3436 -3.5530 14 6 2.0701 -6.5540 -4.4204 15 6 0.5294 -6.6306 -4.4062 16 1 0.1122 -6.1236 -5.2764 17 6 0.0731 -8.0662 -4.3648 18 1 -0.4573 -8.4395 -3.5012 19 6 0.3326 -8.9031 -5.4293 20 7 0.9789 -8.4487 -6.4807 21 14 -0.2324 -10.6829 -5.3776 22 1 -1.7100 -10.7292 -5.2368 23 1 0.1672 -11.3659 -6.6342 24 1 0.3967 -11.3686 -4.2203 25 6 0.1244 -5.8952 -3.1046 26 1 -0.3633 0.0030 1.0277 27 1 -0.3633 0.8886 -0.5163 28 1 -0.3634 -0.8914 -0.5113 29 1 2.0368 2.1689 -0.0004 30 1 4.5060 1.2921 -0.0106 31 1 0.8959 -2.5925 0.5239 32 1 2.5922 -3.1318 0.5176 33 1 1.1041 -4.8599 -0.9182 34 1 3.0693 -5.6682 -2.7110 35 1 3.0044 -4.6149 -4.1519 36 1 2.4931 -7.4659 -3.9993 37 1 2.4275 -6.4132 -5.4405 38 1 1.1612 -9.0374 -7.2298 39 1 -0.8956 -5.5174 -3.1757 40 1 0.2325 -6.5512 -2.2407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597716300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:53 Heat of formation + Delta-G solvation = -44.969840 kcal Electronic energy + Delta-G solvation = -21079.398411 eV Core-core repulsion = 17859.830031 eV Total energy + Delta-G solvation = -3219.568380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.65317 -39.55247 -37.08331 -34.32929 -33.72060 -32.38124 -31.73428 -29.05554 -28.14507 -27.17613 -25.86534 -23.77955 -21.62834 -20.90603 -20.01072 -19.52450 -18.96040 -17.18262 -17.08438 -16.48559 -15.79852 -15.42642 -15.23829 -14.65634 -14.41610 -14.15773 -13.58599 -13.44021 -13.20055 -12.81971 -12.58449 -12.51085 -12.43479 -12.17443 -11.81629 -11.52738 -11.21901 -10.97967 -10.86441 -10.60660 -10.30841 -9.99842 -9.70777 -9.65691 -9.58589 -9.24519 -8.75939 -8.61074 -8.39397 -8.38718 -6.01417 -4.04902 1.64437 2.49861 2.75916 2.90812 3.30950 3.36448 3.37867 3.53226 4.43184 4.47166 4.79136 4.83129 4.92793 5.05669 5.17206 5.30152 5.37115 5.51483 5.55126 5.63541 5.69411 5.76715 5.83528 5.94920 6.11936 6.29891 6.33560 6.49029 6.53086 6.64889 6.71251 6.90555 6.91662 7.09301 7.25368 7.30844 7.69649 7.74847 7.87045 8.00746 8.40513 8.44449 8.97720 9.59207 11.08331 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046405 B = 0.003102 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.238124 B = 9025.443020 C = 9239.279759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.168 4.168 3 C -0.211 4.211 4 C -0.039 4.039 5 O -0.171 6.171 6 C 0.008 3.992 7 C -0.063 4.063 8 C 0.509 3.491 9 O -0.532 6.532 10 N -0.718 5.718 11 C 0.135 3.865 12 H 0.086 0.914 13 C -0.134 4.134 14 C -0.097 4.097 15 C 0.051 3.949 16 H 0.033 0.967 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.062 3.938 20 N -0.888 5.888 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.119 4.119 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.146 0.854 30 H 0.201 0.799 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.398 0.602 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.261 0.739 39 H 0.053 0.947 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.787 14.488 15.422 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.169 4.169 3 C -0.230 4.230 4 C -0.107 4.107 5 O -0.067 6.067 6 C -0.043 4.043 7 C -0.103 4.103 8 C 0.294 3.706 9 O -0.409 6.409 10 N -0.368 5.368 11 C 0.032 3.968 12 H 0.104 0.896 13 C -0.173 4.173 14 C -0.135 4.135 15 C 0.033 3.967 16 H 0.051 0.949 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.526 5.526 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.158 4.158 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.164 0.836 30 H 0.218 0.782 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.232 0.768 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.272 14.774 14.546 20.857 hybrid contribution -0.272 -1.056 0.258 1.121 sum 2.000 13.718 14.804 20.281 Atomic orbital electron populations 1.20171 0.89336 1.02852 1.01619 1.20149 0.97037 0.92016 1.07704 1.21659 0.92656 0.99670 1.09041 1.23915 0.99686 0.80598 1.06465 1.83982 1.28678 1.22788 1.71259 1.21286 0.81158 0.95042 1.06784 1.20128 1.03948 0.89686 0.96560 1.20323 0.77441 0.82356 0.90519 1.90735 1.49360 1.54931 1.45835 1.46188 1.68342 1.12378 1.09888 1.22131 0.96997 0.97020 0.80688 0.89585 1.22656 0.96192 0.98941 0.99492 1.22089 0.99471 0.94129 0.97847 1.19394 0.91463 0.94856 0.91031 0.94854 1.21079 1.36751 0.94935 1.02641 0.92680 1.24986 0.95095 0.98412 0.95459 1.69961 1.40428 1.35754 1.06484 0.86704 0.79111 0.85181 0.77240 1.20311 1.21357 1.20329 1.22865 0.96349 0.94833 1.01707 0.91609 0.91494 0.91706 0.83636 0.78229 0.86165 0.87197 0.76795 0.93077 0.93067 0.92904 0.92594 0.92971 0.92859 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.99 36.00 0.36 -0.47 16 2 C -0.17 -2.07 6.16 -104.74 -0.65 -2.71 16 3 C -0.21 -2.35 10.87 -39.71 -0.43 -2.78 16 4 C -0.04 -0.42 12.09 29.41 0.36 -0.07 16 5 O -0.17 -2.32 10.65 5.73 0.06 -2.26 16 6 C 0.01 0.10 5.81 -35.62 -0.21 -0.11 16 7 C -0.06 -0.68 5.85 -29.03 -0.17 -0.85 16 8 C 0.51 7.54 7.82 -10.98 -0.09 7.45 16 9 O -0.53 -10.38 15.68 5.56 0.09 -10.30 16 10 N -0.72 -10.16 5.10 -52.09 -0.27 -10.43 16 11 C 0.14 2.42 3.23 -66.16 -0.21 2.21 16 12 H 0.09 1.69 7.56 -51.93 -0.39 1.30 16 13 C -0.13 -2.60 6.55 -25.51 -0.17 -2.77 16 14 C -0.10 -2.23 5.60 -25.61 -0.14 -2.38 16 15 C 0.05 1.24 2.73 -90.11 -0.25 1.00 16 16 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 17 C -0.52 -13.75 8.36 -34.44 -0.29 -14.04 16 18 H 0.05 1.43 7.77 -52.48 -0.41 1.02 16 19 C 0.06 1.71 5.35 -17.82 -0.10 1.61 16 20 N -0.89 -25.40 12.63 55.43 0.70 -24.70 16 21 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 C -0.12 -2.30 5.89 -24.74 -0.15 -2.45 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.67 7.78 -51.93 -0.40 0.27 16 29 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.12 0.91 7.77 -51.93 -0.40 0.51 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.40 4.37 8.56 -40.82 -0.35 4.02 16 34 H 0.05 0.92 8.04 -51.93 -0.42 0.51 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.28 7.83 -51.93 -0.41 0.87 16 37 H 0.06 1.39 8.06 -51.93 -0.42 0.97 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -32.70 335.80 -7.63 -40.33 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.13 Total: 2.70 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.12 Total: -16.34 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.43 Total: -35.13 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.15 Total: -12.56 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.70 -7.63 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597716300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.642 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds