Wall clock time and date at job start Thu Apr 9 2020 15:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41378 * 126.58696 * 2 1 4 4 C 1.34511 * 106.84528 * 180.23913 * 3 2 1 5 5 O 1.34302 * 108.41900 * 359.76447 * 4 3 2 6 6 C 1.34298 * 109.47788 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.79302 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46749 * 270.02412 * 7 6 5 9 9 O 1.21282 * 120.00107 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99582 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99750 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.53509 * 327.61542 * 11 10 8 13 13 C 1.54463 * 110.65957 * 90.24214 * 11 10 8 14 14 C 1.53877 * 106.68421 * 142.05289 * 13 11 10 15 15 C 1.54265 * 106.59605 * 0.15594 * 14 13 11 16 16 H 1.09004 * 110.59809 * 95.12740 * 15 14 13 17 17 C 1.50701 * 110.48496 * 217.70899 * 15 14 13 18 18 H 1.08007 * 119.99597 * 114.77641 * 17 15 14 19 19 C 1.37869 * 120.00267 * 294.77624 * 17 15 14 20 20 N 1.31511 * 120.00107 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 120.00208 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46627 * 60.00028 * 21 19 17 23 23 H 1.48498 * 109.47465 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47046 * 300.00861 * 21 19 17 25 25 C 1.54887 * 104.20056 * 336.39127 * 15 14 13 26 26 H 1.09001 * 109.47151 * 270.16739 * 1 2 3 27 27 H 1.09003 * 109.46925 * 30.16066 * 1 2 3 28 28 H 1.09000 * 109.47240 * 150.16362 * 1 2 3 29 29 H 1.08001 * 126.57668 * 359.97438 * 3 2 1 30 30 H 1.07995 * 125.79058 * 179.75480 * 4 3 2 31 31 H 1.08992 * 109.47128 * 150.02227 * 7 6 5 32 32 H 1.09001 * 109.46449 * 30.02010 * 7 6 5 33 33 H 0.97002 * 120.00353 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.85715 * 22.81084 * 13 11 10 35 35 H 1.09003 * 110.15968 * 261.45715 * 13 11 10 36 36 H 1.08995 * 110.02951 * 240.87549 * 14 13 11 37 37 H 1.08998 * 110.07557 * 119.46051 * 14 13 11 38 38 H 0.97007 * 120.00152 * 180.02562 * 20 19 17 39 39 H 1.09002 * 110.75856 * 156.25785 * 25 15 14 40 40 H 1.09006 * 110.75640 * 279.44771 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1352 0.0000 4 6 3.6157 0.6809 -0.0054 5 8 3.5847 -0.6618 -0.0034 6 6 2.3086 -1.0803 0.0027 7 6 1.8520 -2.5165 0.0061 8 6 1.6941 -2.9967 -1.4136 9 8 1.9296 -2.2467 -2.3372 10 7 1.2921 -4.2599 -1.6569 11 6 1.1391 -4.7270 -3.0370 12 1 0.8230 -3.9091 -3.6846 13 6 2.4580 -5.3436 -3.5530 14 6 2.0701 -6.5540 -4.4204 15 6 0.5294 -6.6306 -4.4062 16 1 0.1122 -6.1236 -5.2764 17 6 0.0731 -8.0662 -4.3648 18 1 -0.4573 -8.4395 -3.5012 19 6 0.3326 -8.9031 -5.4293 20 7 0.9789 -8.4487 -6.4807 21 14 -0.2324 -10.6829 -5.3776 22 1 -1.7100 -10.7292 -5.2368 23 1 0.1672 -11.3659 -6.6342 24 1 0.3967 -11.3686 -4.2203 25 6 0.1244 -5.8952 -3.1046 26 1 -0.3633 0.0030 1.0277 27 1 -0.3633 0.8886 -0.5163 28 1 -0.3634 -0.8914 -0.5113 29 1 2.0368 2.1689 -0.0004 30 1 4.5060 1.2921 -0.0106 31 1 0.8959 -2.5925 0.5239 32 1 2.5922 -3.1318 0.5176 33 1 1.1041 -4.8599 -0.9182 34 1 3.0693 -5.6682 -2.7110 35 1 3.0044 -4.6149 -4.1519 36 1 2.4931 -7.4659 -3.9993 37 1 2.4275 -6.4132 -5.4405 38 1 1.1612 -9.0374 -7.2298 39 1 -0.8956 -5.5174 -3.1757 40 1 0.2325 -6.5512 -2.2407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597716300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:52 Heat of formation + Delta-G solvation = -65.373478 kcal Electronic energy + Delta-G solvation = -21080.283179 eV Core-core repulsion = 17859.830031 eV Total energy + Delta-G solvation = -3220.453148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.50470 -40.83546 -38.69523 -35.32440 -35.18599 -33.93963 -32.90121 -30.09374 -29.81664 -28.62658 -26.92319 -25.63990 -22.54762 -22.03543 -21.51256 -20.82198 -20.42233 -18.47797 -18.27109 -17.88412 -16.98583 -16.67056 -16.56134 -16.28686 -16.02564 -15.22436 -14.84166 -14.39877 -14.30238 -14.06844 -13.92113 -13.70719 -13.58629 -13.36913 -13.07502 -13.00139 -12.75594 -12.50783 -12.44903 -12.31970 -12.10421 -11.68757 -11.44440 -11.13328 -10.92253 -10.76639 -10.48726 -10.46636 -9.98568 -9.25204 -8.09868 -6.20118 0.76988 1.44525 1.45594 1.53062 1.63522 1.65741 2.07811 2.40849 2.47608 3.21635 3.63626 3.84204 3.99549 4.02173 4.05730 4.09869 4.20677 4.31756 4.46574 4.64832 4.68914 4.80013 4.82271 4.86061 4.90842 4.98826 5.02186 5.05338 5.15733 5.17053 5.31961 5.35551 5.41557 5.64651 5.66401 5.70185 5.92012 5.97898 6.24457 6.38363 6.62869 6.92026 7.30626 7.47963 8.99466 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046405 B = 0.003102 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.238124 B = 9025.443020 C = 9239.279759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.182 4.182 3 C -0.228 4.228 4 C -0.042 4.042 5 O -0.194 6.194 6 C -0.023 4.023 7 C -0.053 4.053 8 C 0.509 3.491 9 O -0.584 6.584 10 N -0.704 5.704 11 C 0.150 3.850 12 H 0.066 0.934 13 C -0.124 4.124 14 C -0.086 4.086 15 C 0.039 3.961 16 H -0.003 1.003 17 C -0.528 4.528 18 H 0.063 0.937 19 C 0.008 3.992 20 N -0.924 5.924 21 Si 0.955 3.045 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.268 1.268 25 C -0.103 4.103 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.166 0.834 30 H 0.235 0.765 31 H 0.156 0.844 32 H 0.137 0.863 33 H 0.418 0.582 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.023 0.977 38 H 0.259 0.741 39 H 0.062 0.938 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 14.516 18.146 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.183 4.183 3 C -0.247 4.247 4 C -0.109 4.109 5 O -0.091 6.091 6 C -0.073 4.073 7 C -0.092 4.092 8 C 0.296 3.704 9 O -0.464 6.464 10 N -0.356 5.356 11 C 0.044 3.956 12 H 0.084 0.916 13 C -0.163 4.163 14 C -0.125 4.125 15 C 0.020 3.980 16 H 0.015 0.985 17 C -0.566 4.566 18 H 0.081 0.919 19 C -0.191 4.191 20 N -0.563 5.563 21 Si 0.780 3.220 22 H -0.195 1.195 23 H -0.216 1.216 24 H -0.193 1.193 25 C -0.141 4.141 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.183 0.817 30 H 0.251 0.749 31 H 0.173 0.827 32 H 0.155 0.845 33 H 0.256 0.744 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.751 14.786 17.325 22.844 hybrid contribution -0.104 -0.982 -0.619 1.165 sum 1.647 13.805 16.706 21.734 Atomic orbital electron populations 1.20224 0.88030 1.02659 1.02970 1.20615 0.98273 0.92430 1.07009 1.22039 0.92819 1.00567 1.09279 1.24691 1.01109 0.80041 1.05096 1.83965 1.29287 1.24052 1.71749 1.21731 0.81190 0.96241 1.08090 1.20206 1.06519 0.88887 0.93589 1.21060 0.75812 0.81605 0.91874 1.90720 1.51507 1.56249 1.47881 1.45925 1.68057 1.12841 1.08742 1.21652 0.95423 0.95817 0.82662 0.91576 1.22523 0.97273 0.97095 0.99365 1.21866 0.98775 0.95159 0.96709 1.19391 0.91979 0.94306 0.92335 0.98522 1.21506 1.36257 0.96081 1.02738 0.91907 1.25824 0.95324 1.02705 0.95215 1.70114 1.41889 1.37142 1.07190 0.85661 0.78924 0.80117 0.77249 1.19473 1.21622 1.19269 1.22654 0.97061 0.94873 0.99532 0.89402 0.91252 0.92330 0.81681 0.74927 0.82694 0.84547 0.74411 0.91072 0.93852 0.94326 0.95761 0.93238 0.91937 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.99 71.24 0.71 -0.77 16 2 C -0.18 -4.20 6.16 -19.94 -0.12 -4.32 16 3 C -0.23 -4.74 10.87 22.19 0.24 -4.50 16 4 C -0.04 -0.86 12.09 66.97 0.81 -0.05 16 5 O -0.19 -5.02 10.65 -2.43 -0.03 -5.05 16 6 C -0.02 -0.55 5.81 24.84 0.14 -0.41 16 7 C -0.05 -0.98 5.85 29.10 0.17 -0.81 16 8 C 0.51 14.16 7.82 87.66 0.69 14.84 16 9 O -0.58 -22.60 15.68 -3.04 -0.05 -22.64 16 10 N -0.70 -18.22 5.10 -437.11 -2.23 -20.45 16 11 C 0.15 5.23 3.23 46.13 0.15 5.38 16 12 H 0.07 2.62 7.56 -2.39 -0.02 2.60 16 13 C -0.12 -4.78 6.55 31.39 0.21 -4.57 16 14 C -0.09 -4.09 5.60 31.32 0.18 -3.92 16 15 C 0.04 1.91 2.73 -10.47 -0.03 1.88 16 16 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 17 C -0.53 -28.17 8.36 25.60 0.21 -27.95 16 18 H 0.06 3.18 7.77 -2.91 -0.02 3.16 16 19 C 0.01 0.43 5.35 84.65 0.45 0.88 16 20 N -0.92 -54.36 12.63 21.44 0.27 -54.09 16 21 Si 0.95 42.97 29.54 68.60 2.03 44.99 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 C -0.10 -3.85 5.89 31.88 0.19 -3.66 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.11 7.78 -2.39 -0.02 1.09 16 29 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 30 H 0.23 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.16 1.74 7.77 -2.39 -0.02 1.72 16 32 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.42 7.60 8.56 -92.71 -0.79 6.80 16 34 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.89 7.83 -2.39 -0.02 1.87 16 37 H 0.02 1.25 8.06 -2.39 -0.02 1.23 16 38 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.08 2.70 7.92 -2.38 -0.02 2.68 16 Total: -1.00 -73.27 335.80 4.23 -69.04 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.24 Total: 16.15 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 4.00 Total: -27.96 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.96 Total: -74.54 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.07 Total: -27.69 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -73.27 4.23 -69.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597716300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.671 kcal (2) G-P(sol) polarization free energy of solvation -73.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds