Wall clock time and date at job start Thu Apr 9 2020 15:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47316 * 2 1 4 4 C 1.38220 * 119.95954 * 265.00126 * 3 2 1 5 5 C 1.38119 * 120.12359 * 179.97438 * 4 3 2 6 6 C 1.38932 * 120.04469 * 0.25486 * 5 4 3 7 7 N 1.39916 * 120.04371 * 179.74328 * 6 5 4 8 8 C 1.34780 * 119.99809 * 33.32201 * 7 6 5 9 9 O 1.21282 * 120.00285 * 5.27433 * 8 7 6 10 10 C 1.50709 * 119.99653 * 185.27839 * 8 7 6 11 11 H 1.08999 * 109.47077 * 300.00192 * 10 8 7 12 12 C 1.52999 * 109.46956 * 59.99937 * 10 8 7 13 13 C 1.50692 * 109.46775 * 179.97438 * 10 8 7 14 14 H 1.08004 * 120.00333 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99804 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99919 * 180.02562 * 15 13 10 17 17 Si 1.86802 * 120.00035 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47236 * 89.99610 * 17 15 13 19 19 H 1.48502 * 109.47249 * 209.99722 * 17 15 13 20 20 H 1.48502 * 109.46884 * 329.99640 * 17 15 13 21 21 C 1.38755 * 119.90825 * 359.46857 * 6 5 4 22 22 C 1.38621 * 119.88134 * 0.53224 * 21 6 5 23 23 O 1.35900 * 120.02539 * 179.76554 * 22 21 6 24 24 C 1.42897 * 116.99631 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.46807 * 299.99617 * 1 2 3 26 26 H 1.08998 * 109.47015 * 60.00026 * 1 2 3 27 27 H 1.09001 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47231 * 240.00238 * 2 1 3 29 29 H 1.09002 * 109.47460 * 120.00158 * 2 1 3 30 30 H 1.07999 * 119.93708 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.97664 * 179.97438 * 5 4 3 32 32 H 0.96997 * 120.00078 * 213.31657 * 7 6 5 33 33 H 1.09001 * 109.47369 * 299.99597 * 12 10 8 34 34 H 1.08999 * 109.47493 * 59.99611 * 12 10 8 35 35 H 1.09002 * 109.46822 * 180.02562 * 12 10 8 36 36 H 0.97001 * 119.99832 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.05948 * 180.29372 * 21 6 5 38 38 H 1.08997 * 109.46960 * 299.99879 * 24 23 22 39 39 H 1.08998 * 109.47561 * 60.00153 * 24 23 22 40 40 H 1.09004 * 109.47209 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3609 2.0367 -1.1930 5 6 2.8211 3.3390 -1.1969 6 6 2.9600 4.0313 -0.0005 7 7 3.4314 5.3487 -0.0041 8 6 3.1342 6.1679 -1.0322 9 8 2.3806 5.7952 -1.9063 10 6 3.7384 7.5471 -1.0957 11 1 3.4428 8.1142 -0.2130 12 6 5.2635 7.4340 -1.1420 13 6 3.2497 8.2530 -2.3340 14 1 2.5692 7.7532 -3.0076 15 6 3.6703 9.5374 -2.6067 16 7 3.2434 10.1538 -3.6872 17 14 4.8467 10.4022 -1.4414 18 1 6.2459 10.1223 -1.8526 19 1 4.6010 11.8661 -1.4862 20 1 4.6282 9.9057 -0.0590 21 6 2.6253 3.4164 1.1975 22 6 2.1637 2.1093 1.1976 23 8 1.8395 1.5027 2.3697 24 6 1.9995 2.2711 3.5638 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.2574 1.4987 -2.1237 31 1 3.0775 3.8178 -2.1304 32 1 3.9720 5.6724 0.7334 33 1 5.6174 6.9233 -0.2464 34 1 5.5592 6.8668 -2.0245 35 1 5.7005 8.4316 -1.1874 36 1 3.5397 11.0572 -3.8793 37 1 2.7278 3.9540 2.1287 38 1 3.0429 2.5692 3.6670 39 1 1.3712 3.1602 3.5106 40 1 1.7069 1.6700 4.4247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597740153.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:56 Heat of formation + Delta-G solvation = -52.595063 kcal Electronic energy + Delta-G solvation = -21361.780136 eV Core-core repulsion = 18141.881102 eV Total energy + Delta-G solvation = -3219.899035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.52488 -39.28528 -37.24287 -34.99800 -33.96905 -32.76311 -31.23531 -30.07634 -28.70556 -27.12309 -25.21492 -24.23386 -22.64939 -22.31804 -20.90874 -19.56438 -18.13338 -16.85931 -16.72785 -15.88421 -15.74408 -15.58527 -15.37146 -14.75521 -14.42146 -14.05542 -13.80635 -13.37019 -13.31105 -13.13604 -12.78995 -12.55064 -12.36882 -12.02733 -11.85155 -11.75776 -11.48058 -11.26197 -11.04898 -10.86761 -10.81744 -10.67608 -10.36282 -9.72879 -9.69794 -9.18408 -8.86162 -8.63940 -8.40935 -7.61323 -6.10847 -4.12213 1.39567 1.59778 3.18612 3.21172 3.25297 3.32035 3.33066 3.54544 3.96304 4.32150 4.81571 4.86476 4.95386 5.01825 5.15763 5.18077 5.26596 5.38395 5.42824 5.47265 5.51928 5.64646 5.69226 5.85869 5.92323 6.02445 6.02565 6.19251 6.25500 6.31134 6.35024 6.52571 6.66135 6.68361 6.74294 7.06014 7.06202 7.43715 7.44898 7.89612 8.46244 8.85271 9.07758 9.46982 11.01913 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.003973 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.743782 B = 7045.454784 C = 7601.546323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C -0.142 4.142 4 C -0.061 4.061 5 C -0.155 4.155 6 C 0.199 3.801 7 N -0.690 5.690 8 C 0.527 3.473 9 O -0.504 6.504 10 C -0.002 4.002 11 H 0.055 0.945 12 C -0.146 4.146 13 C -0.510 4.510 14 H 0.094 0.906 15 C 0.072 3.928 16 N -0.893 5.893 17 Si 0.884 3.116 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.268 1.268 21 C -0.243 4.243 22 C 0.144 3.856 23 O -0.314 6.314 24 C 0.027 3.973 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.139 0.861 32 H 0.406 0.594 33 H 0.033 0.967 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.265 0.735 37 H 0.128 0.872 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 -17.071 13.702 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.143 4.143 4 C -0.080 4.080 5 C -0.176 4.176 6 C 0.103 3.897 7 N -0.335 5.335 8 C 0.316 3.684 9 O -0.376 6.376 10 C -0.024 4.024 11 H 0.072 0.928 12 C -0.203 4.203 13 C -0.548 4.548 14 H 0.112 0.888 15 C -0.130 4.130 16 N -0.531 5.531 17 Si 0.714 3.286 18 H -0.204 1.204 19 H -0.222 1.222 20 H -0.193 1.193 21 C -0.264 4.264 22 C 0.098 3.902 23 O -0.227 6.227 24 C -0.068 4.068 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.157 0.843 32 H 0.241 0.759 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.009 -17.258 12.930 21.565 hybrid contribution 1.063 1.204 1.141 1.970 sum 1.054 -16.054 14.072 21.374 Atomic orbital electron populations 1.21724 0.95228 1.01094 1.02155 1.20261 0.95845 0.92254 1.02227 1.19124 1.07475 0.97366 0.90364 1.20742 0.96553 0.94045 0.96645 1.21162 1.04062 0.94121 0.98253 1.17579 0.94400 0.84430 0.93311 1.44087 1.54002 1.09826 1.25622 1.21575 0.79874 0.87393 0.79519 1.90608 1.33775 1.75713 1.37491 1.19332 0.92843 0.89063 1.01148 0.92783 1.22133 0.96987 1.01040 1.00173 1.20904 1.29103 0.98909 1.05847 0.88762 1.24970 0.96054 0.96928 0.95045 1.69876 1.44413 1.13328 1.25453 0.86917 0.81376 0.78344 0.81933 1.20423 1.22201 1.19281 1.20856 1.11318 0.96036 0.98214 1.18445 0.95589 0.90612 0.85506 1.86048 1.82339 1.41325 1.13023 1.23018 1.01357 0.96977 0.85466 0.92603 0.92726 0.92908 0.91522 0.91171 0.85315 0.84349 0.75900 0.94765 0.92172 0.93028 0.92451 0.85460 0.92802 0.92696 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 37.16 0.37 -1.12 16 2 C -0.07 -0.74 5.78 -27.89 -0.16 -0.90 16 3 C -0.14 -1.89 5.15 -104.44 -0.54 -2.43 16 4 C -0.06 -0.87 9.67 -39.63 -0.38 -1.25 16 5 C -0.16 -2.62 8.65 -39.37 -0.34 -2.96 16 6 C 0.20 3.24 6.28 -83.72 -0.53 2.71 16 7 N -0.69 -11.49 5.19 -9.88 -0.05 -11.54 16 8 C 0.53 11.28 6.89 -10.98 -0.08 11.20 16 9 O -0.50 -12.63 13.14 5.56 0.07 -12.55 16 10 C 0.00 -0.05 2.23 -92.92 -0.21 -0.26 16 11 H 0.05 1.18 7.20 -51.93 -0.37 0.81 16 12 C -0.15 -2.90 8.57 37.16 0.32 -2.58 16 13 C -0.51 -14.43 8.95 -34.44 -0.31 -14.74 16 14 H 0.09 3.04 7.00 -52.48 -0.37 2.68 16 15 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 16 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 17 Si 0.88 20.85 24.37 -169.99 -4.14 16.71 16 18 H -0.28 -6.33 6.87 56.52 0.39 -5.94 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -5.83 6.53 56.52 0.37 -5.46 16 21 C -0.24 -3.35 8.95 -39.25 -0.35 -3.71 16 22 C 0.14 1.94 6.66 -39.24 -0.26 1.68 16 23 O -0.31 -3.71 9.63 -19.43 -0.19 -3.90 16 24 C 0.03 0.22 9.81 101.05 0.99 1.21 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 29 H 0.07 0.74 7.69 -51.93 -0.40 0.34 16 30 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.14 2.63 6.41 -52.49 -0.34 2.29 16 32 H 0.41 5.38 8.41 -40.82 -0.34 5.04 16 33 H 0.03 0.53 7.69 -51.93 -0.40 0.13 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.13 1.46 6.30 -52.48 -0.33 1.12 16 38 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 39 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -33.00 324.14 -5.87 -38.87 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.65 Total: 5.16 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -1.57 Total: -11.17 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.72 Total: -38.00 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.11 Total: -16.45 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.14 Total: 16.71 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.00 -5.87 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597740153.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.723 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds