Wall clock time and date at job start Thu Apr 9 2020 15:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47316 * 2 1 4 4 C 1.38220 * 119.95954 * 265.00126 * 3 2 1 5 5 C 1.38119 * 120.12359 * 179.97438 * 4 3 2 6 6 C 1.38932 * 120.04469 * 0.25486 * 5 4 3 7 7 N 1.39916 * 120.04371 * 179.74328 * 6 5 4 8 8 C 1.34780 * 119.99809 * 33.32201 * 7 6 5 9 9 O 1.21282 * 120.00285 * 5.27433 * 8 7 6 10 10 C 1.50709 * 119.99653 * 185.27839 * 8 7 6 11 11 H 1.08999 * 109.47077 * 300.00192 * 10 8 7 12 12 C 1.52999 * 109.46956 * 59.99937 * 10 8 7 13 13 C 1.50692 * 109.46775 * 179.97438 * 10 8 7 14 14 H 1.08004 * 120.00333 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99804 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99919 * 180.02562 * 15 13 10 17 17 Si 1.86802 * 120.00035 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47236 * 89.99610 * 17 15 13 19 19 H 1.48502 * 109.47249 * 209.99722 * 17 15 13 20 20 H 1.48502 * 109.46884 * 329.99640 * 17 15 13 21 21 C 1.38755 * 119.90825 * 359.46857 * 6 5 4 22 22 C 1.38621 * 119.88134 * 0.53224 * 21 6 5 23 23 O 1.35900 * 120.02539 * 179.76554 * 22 21 6 24 24 C 1.42897 * 116.99631 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.46807 * 299.99617 * 1 2 3 26 26 H 1.08998 * 109.47015 * 60.00026 * 1 2 3 27 27 H 1.09001 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47231 * 240.00238 * 2 1 3 29 29 H 1.09002 * 109.47460 * 120.00158 * 2 1 3 30 30 H 1.07999 * 119.93708 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.97664 * 179.97438 * 5 4 3 32 32 H 0.96997 * 120.00078 * 213.31657 * 7 6 5 33 33 H 1.09001 * 109.47369 * 299.99597 * 12 10 8 34 34 H 1.08999 * 109.47493 * 59.99611 * 12 10 8 35 35 H 1.09002 * 109.46822 * 180.02562 * 12 10 8 36 36 H 0.97001 * 119.99832 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.05948 * 180.29372 * 21 6 5 38 38 H 1.08997 * 109.46960 * 299.99879 * 24 23 22 39 39 H 1.08998 * 109.47561 * 60.00153 * 24 23 22 40 40 H 1.09004 * 109.47209 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3609 2.0367 -1.1930 5 6 2.8211 3.3390 -1.1969 6 6 2.9600 4.0313 -0.0005 7 7 3.4314 5.3487 -0.0041 8 6 3.1342 6.1679 -1.0322 9 8 2.3806 5.7952 -1.9063 10 6 3.7384 7.5471 -1.0957 11 1 3.4428 8.1142 -0.2130 12 6 5.2635 7.4340 -1.1420 13 6 3.2497 8.2530 -2.3340 14 1 2.5692 7.7532 -3.0076 15 6 3.6703 9.5374 -2.6067 16 7 3.2434 10.1538 -3.6872 17 14 4.8467 10.4022 -1.4414 18 1 6.2459 10.1223 -1.8526 19 1 4.6010 11.8661 -1.4862 20 1 4.6282 9.9057 -0.0590 21 6 2.6253 3.4164 1.1975 22 6 2.1637 2.1093 1.1976 23 8 1.8395 1.5027 2.3697 24 6 1.9995 2.2711 3.5638 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.2574 1.4987 -2.1237 31 1 3.0775 3.8178 -2.1304 32 1 3.9720 5.6724 0.7334 33 1 5.6174 6.9233 -0.2464 34 1 5.5592 6.8668 -2.0245 35 1 5.7005 8.4316 -1.1874 36 1 3.5397 11.0572 -3.8793 37 1 2.7278 3.9540 2.1287 38 1 3.0429 2.5692 3.6670 39 1 1.3712 3.1602 3.5106 40 1 1.7069 1.6700 4.4247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597740153.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:45:55 Heat of formation + Delta-G solvation = -75.612214 kcal Electronic energy + Delta-G solvation = -21362.778235 eV Core-core repulsion = 18141.881102 eV Total energy + Delta-G solvation = -3220.897133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75139 -40.62467 -38.36085 -36.27118 -35.87337 -34.07347 -33.09510 -31.17023 -29.71051 -27.97591 -27.14809 -25.60698 -23.97752 -23.46848 -22.02730 -21.07255 -19.37568 -18.77557 -18.10502 -17.14073 -16.94853 -16.75450 -16.60483 -16.27808 -15.92464 -15.16200 -14.99412 -14.82395 -14.64267 -14.30529 -14.10297 -14.03056 -13.64153 -13.49814 -12.96853 -12.83749 -12.66629 -12.58873 -12.48953 -12.22897 -12.12102 -11.76903 -11.68559 -11.48229 -11.26540 -11.02193 -10.78451 -10.51823 -9.53292 -8.80401 -8.28432 -6.37402 0.23283 0.45293 1.33440 1.39897 1.51199 1.73789 2.09792 2.33566 2.41353 2.78515 3.05206 3.79620 3.91595 3.97817 4.17057 4.22113 4.37265 4.37459 4.43463 4.49380 4.55813 4.57153 4.60309 4.64806 4.72424 4.77581 4.85262 4.96959 5.04224 5.13337 5.25455 5.36252 5.40531 5.43492 5.49980 5.54679 5.61168 5.86933 6.22476 6.43033 6.56891 6.78565 7.21527 7.34145 8.89180 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.003973 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.743782 B = 7045.454784 C = 7601.546323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.064 4.064 5 C -0.182 4.182 6 C 0.173 3.827 7 N -0.667 5.667 8 C 0.528 3.472 9 O -0.556 6.556 10 C -0.004 4.004 11 H 0.076 0.924 12 C -0.141 4.141 13 C -0.525 4.525 14 H 0.030 0.970 15 C 0.007 3.993 16 N -0.952 5.952 17 Si 0.960 3.040 18 H -0.260 1.260 19 H -0.300 1.300 20 H -0.227 1.227 21 C -0.233 4.233 22 C 0.144 3.856 23 O -0.319 6.319 24 C 0.016 3.984 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.145 0.855 31 H 0.105 0.895 32 H 0.425 0.575 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.268 0.732 37 H 0.155 0.845 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -18.414 17.766 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.142 4.142 4 C -0.083 4.083 5 C -0.202 4.202 6 C 0.078 3.922 7 N -0.314 5.314 8 C 0.317 3.683 9 O -0.431 6.431 10 C -0.026 4.026 11 H 0.093 0.907 12 C -0.198 4.198 13 C -0.563 4.563 14 H 0.048 0.952 15 C -0.189 4.189 16 N -0.592 5.592 17 Si 0.784 3.216 18 H -0.186 1.186 19 H -0.228 1.228 20 H -0.150 1.150 21 C -0.254 4.254 22 C 0.097 3.903 23 O -0.232 6.232 24 C -0.079 4.079 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.162 0.838 31 H 0.123 0.877 32 H 0.264 0.736 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.173 0.827 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.511 -18.655 17.067 25.329 hybrid contribution 0.468 1.449 -0.113 1.527 sum 1.979 -17.206 16.954 24.236 Atomic orbital electron populations 1.21701 0.94770 1.02213 1.01275 1.20329 0.96111 0.90656 1.03331 1.19473 1.06137 0.98596 0.90023 1.20902 0.96133 0.93184 0.98042 1.21073 1.06127 0.95544 0.97488 1.17702 0.96260 0.84115 0.94077 1.43613 1.53520 1.09587 1.24662 1.21357 0.79350 0.87582 0.79972 1.90602 1.36180 1.76598 1.39757 1.19272 0.95013 0.89485 0.98817 0.90665 1.22039 0.94117 1.01396 1.02264 1.21066 1.28339 0.99584 1.07303 0.95153 1.26038 0.98200 0.97612 0.97067 1.70077 1.46731 1.13987 1.28360 0.85708 0.78777 0.76140 0.80955 1.18597 1.22803 1.15033 1.21031 1.10007 0.96209 0.98140 1.18591 0.94764 0.90478 0.86432 1.86062 1.81903 1.41925 1.13298 1.23355 1.02380 0.97507 0.84619 0.93511 0.93561 0.90835 0.90053 0.90435 0.83768 0.87674 0.73618 0.89475 0.93516 0.93251 0.92337 0.82711 0.91547 0.92421 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.89 71.98 0.71 -1.92 16 2 C -0.07 -1.29 5.78 29.85 0.17 -1.12 16 3 C -0.14 -3.53 5.15 -19.74 -0.10 -3.63 16 4 C -0.06 -1.81 9.67 22.24 0.21 -1.60 16 5 C -0.18 -6.33 8.65 22.41 0.19 -6.13 16 6 C 0.17 5.53 6.28 38.14 0.24 5.77 16 7 N -0.67 -21.35 5.19 -303.54 -1.58 -22.93 16 8 C 0.53 22.94 6.89 87.66 0.60 23.54 16 9 O -0.56 -29.66 13.14 -3.03 -0.04 -29.70 16 10 C 0.00 -0.19 2.23 -12.29 -0.03 -0.22 16 11 H 0.08 3.07 7.20 -2.39 -0.02 3.05 16 12 C -0.14 -5.21 8.57 71.98 0.62 -4.60 16 13 C -0.52 -31.05 8.95 25.60 0.23 -30.82 16 14 H 0.03 2.13 7.00 -2.91 -0.02 2.11 16 15 C 0.01 0.43 5.45 84.65 0.46 0.90 16 16 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 17 Si 0.96 42.18 24.37 68.60 1.67 43.85 16 18 H -0.26 -10.70 6.87 99.48 0.68 -10.01 16 19 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.23 -8.48 6.53 99.48 0.65 -7.84 16 21 C -0.23 -5.88 8.95 22.48 0.20 -5.68 16 22 C 0.14 3.54 6.66 22.49 0.15 3.69 16 23 O -0.32 -6.51 9.63 -92.42 -0.89 -7.40 16 24 C 0.02 0.20 9.81 113.37 1.11 1.31 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.34 8.05 -2.38 -0.02 1.32 16 29 H 0.08 1.41 7.69 -2.39 -0.02 1.39 16 30 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.11 4.34 6.41 -2.91 -0.02 4.32 16 32 H 0.42 9.85 8.41 -92.71 -0.78 9.07 16 33 H 0.09 2.30 7.69 -2.39 -0.02 2.28 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.86 3.27 -2.39 -0.01 1.85 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 37 H 0.16 2.94 6.30 -2.91 -0.02 2.92 16 38 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 39 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -78.45 324.14 4.44 -74.01 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.19 Total: 23.21 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 4.78 Total: -20.52 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -1.28 Total: -83.46 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.93 Total: -37.10 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.67 Total: 43.85 kcal Total: -78.45 4.44 -74.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597740153.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.604 kcal (2) G-P(sol) polarization free energy of solvation -78.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds