Wall clock time and date at job start Thu Apr 9 2020 15:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47061 * 299.99784 * 3 2 1 6 6 H 1.48509 * 109.47013 * 59.99486 * 3 2 1 7 7 C 1.37878 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47241 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99979 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99963 * 180.02562 * 11 10 9 14 14 C 1.46918 * 120.63210 * 179.97438 * 13 11 10 15 15 C 1.53193 * 108.77968 * 233.62922 * 14 13 11 16 16 C 1.53045 * 109.30820 * 305.36509 * 15 14 13 17 17 C 1.50697 * 109.45841 * 181.38715 * 16 15 14 18 18 C 1.34517 * 125.79067 * 120.00264 * 17 16 15 19 19 C 1.41388 * 106.83576 * 179.97438 * 18 17 16 20 20 C 1.34511 * 106.84442 * 359.97438 * 19 18 17 21 21 O 1.34295 * 108.42007 * 0.27361 * 20 19 18 22 22 C 1.53036 * 109.53813 * 61.36363 * 16 15 14 23 23 C 1.46930 * 120.62905 * 0.02562 * 13 11 10 24 24 H 0.97006 * 120.00085 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47213 * 59.99256 * 9 7 2 26 26 H 1.09004 * 109.46944 * 300.00034 * 9 7 2 27 27 H 1.09006 * 109.46793 * 59.99838 * 10 9 7 28 28 H 1.08994 * 109.47055 * 300.00383 * 10 9 7 29 29 H 1.09006 * 109.59032 * 113.83554 * 14 13 11 30 30 H 1.09001 * 109.58589 * 353.41789 * 14 13 11 31 31 H 1.08996 * 109.49857 * 185.41407 * 15 14 13 32 32 H 1.08991 * 109.52307 * 65.32571 * 15 14 13 33 33 H 1.09004 * 109.45738 * 301.35696 * 16 15 14 34 34 H 1.07992 * 126.58259 * 359.93887 * 18 17 16 35 35 H 1.08001 * 126.57171 * 180.02562 * 19 18 17 36 36 H 1.08002 * 125.78644 * 179.97438 * 20 19 18 37 37 H 1.08989 * 109.49888 * 58.58788 * 22 16 15 38 38 H 1.09005 * 109.49782 * 178.68365 * 22 16 15 39 39 H 1.09003 * 109.58969 * 246.16068 * 23 13 11 40 40 H 1.08994 * 109.58800 * 6.58793 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0021 13 7 2.1657 -6.1344 0.0018 14 6 1.4452 -7.4147 0.0030 15 6 1.9533 -8.2655 1.1713 16 6 3.4747 -8.4004 1.0749 17 6 3.9745 -9.2651 2.2034 18 6 4.6443 -10.4239 2.0694 19 6 4.9162 -10.8931 3.3752 20 6 4.3968 -9.9926 4.2289 21 8 3.8228 -9.0117 3.5136 22 6 4.1185 -7.0153 1.1700 23 6 3.6349 -6.1505 0.0024 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8894 29 1 1.6273 -7.9375 -0.9361 30 1 0.3770 -7.2328 0.1209 31 1 1.4968 -9.2542 1.1269 32 1 1.6897 -7.7850 2.1134 33 1 3.7389 -8.8588 0.1218 34 1 4.9208 -10.9040 1.1424 35 1 5.4411 -11.8000 3.6368 36 1 4.4311 -10.0514 5.3068 37 1 3.8345 -6.5462 2.1119 38 1 5.2031 -7.1143 1.1248 39 1 3.9962 -6.5698 -0.9366 40 1 4.0114 -5.1344 0.1201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597925566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:07 Heat of formation + Delta-G solvation = -37.826470 kcal Electronic energy + Delta-G solvation = -21142.026791 eV Core-core repulsion = 17922.768171 eV Total energy + Delta-G solvation = -3219.258620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.78978 -39.82824 -37.35057 -33.68273 -33.48975 -33.00514 -31.59620 -30.56008 -29.19408 -26.10398 -24.81127 -23.34445 -22.20838 -21.78341 -20.91654 -20.07966 -18.49479 -17.65079 -16.91706 -16.17829 -15.86478 -15.38740 -15.20524 -14.87127 -14.47728 -14.31758 -14.03006 -13.64906 -13.08290 -13.02323 -12.97783 -12.60825 -12.49347 -12.12703 -12.09141 -11.50407 -11.37502 -11.18514 -10.93703 -10.88084 -10.70464 -10.55414 -10.12089 -9.94761 -9.59815 -9.15117 -8.96789 -8.64075 -8.43526 -8.30138 -5.94854 -3.99136 1.54312 2.40581 2.81007 3.22378 3.29230 3.33391 3.40658 3.43929 4.29420 4.47625 4.50837 4.63689 4.78268 4.85323 4.96687 5.06407 5.19772 5.21546 5.40164 5.43894 5.48565 5.51012 5.65051 5.67205 5.71061 5.73504 5.89941 5.93710 6.01870 6.15122 6.22679 6.23756 6.29342 6.74584 6.92254 6.96070 7.75483 7.76662 7.88082 8.08769 8.39957 8.76110 9.09607 9.64372 11.16162 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030654 B = 0.003247 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.213494 B = 8621.083977 C = 9036.375199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.534 6.534 13 N -0.626 5.626 14 C 0.111 3.889 15 C -0.129 4.129 16 C -0.006 4.006 17 C 0.004 3.996 18 C -0.217 4.217 19 C -0.215 4.215 20 C -0.046 4.046 21 O -0.171 6.171 22 C -0.131 4.131 23 C 0.110 3.890 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.200 0.800 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.446 -22.378 3.870 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.304 3.696 12 O -0.409 6.409 13 N -0.363 5.363 14 C -0.012 4.012 15 C -0.167 4.167 16 C -0.024 4.024 17 C -0.047 4.047 18 C -0.236 4.236 19 C -0.235 4.235 20 C -0.113 4.113 21 O -0.067 6.067 22 C -0.169 4.169 23 C -0.013 4.013 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.217 0.783 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.462 -21.978 3.978 24.664 hybrid contribution 0.753 0.474 0.129 0.900 sum 11.216 -21.504 4.107 24.598 Atomic orbital electron populations 1.70012 1.06057 1.26449 1.50321 1.25031 0.94821 0.99234 0.95342 0.86542 0.80013 0.83869 0.77575 1.19737 1.21024 1.21035 1.21257 0.92940 0.90999 1.51201 0.92567 1.18913 0.93195 0.89402 0.98606 1.21883 1.00731 0.91980 1.02257 1.21588 0.88412 0.85482 0.74142 1.90656 1.14424 1.87145 1.48672 1.48315 1.06385 1.05896 1.75681 1.21468 0.98733 0.83917 0.97032 1.21999 0.93690 1.00650 1.00346 1.19849 0.95824 0.93994 0.92749 1.22485 1.02171 0.97393 0.82632 1.21590 1.05819 0.97417 0.98746 1.21815 1.06572 1.02235 0.92834 1.24035 1.00635 0.88868 0.97811 1.84041 1.61453 1.43791 1.17372 1.22013 1.00503 0.94106 1.00318 1.21674 0.80223 1.01804 0.97642 0.93016 0.95836 0.95849 0.90277 0.90256 0.91885 0.88705 0.90622 0.90835 0.88126 0.83623 0.83639 0.78288 0.90645 0.90338 0.91469 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.64 3.99 -27.88 -0.11 -2.75 16 11 C 0.51 10.12 7.70 -10.99 -0.08 10.04 16 12 O -0.53 -12.79 15.39 5.56 0.09 -12.70 16 13 N -0.63 -9.18 2.97 -172.80 -0.51 -9.69 16 14 C 0.11 1.40 6.43 -3.71 -0.02 1.37 16 15 C -0.13 -1.36 5.34 -26.61 -0.14 -1.51 16 16 C -0.01 -0.05 2.55 -91.73 -0.23 -0.29 16 17 C 0.00 0.04 5.83 -35.63 -0.21 -0.17 16 18 C -0.22 -2.03 10.78 -39.70 -0.43 -2.45 16 19 C -0.22 -1.87 10.91 -39.70 -0.43 -2.31 16 20 C -0.05 -0.40 12.09 29.41 0.36 -0.05 16 21 O -0.17 -1.94 10.65 5.71 0.06 -1.88 16 22 C -0.13 -1.29 5.34 -26.64 -0.14 -1.43 16 23 C 0.11 1.21 6.34 -3.74 -0.02 1.19 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.08 1.49 7.69 -51.93 -0.40 1.09 16 28 H 0.08 1.48 7.94 -51.93 -0.41 1.07 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.07 0.87 8.14 -51.94 -0.42 0.45 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.08 5.93 -51.93 -0.31 0.77 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -34.94 331.24 -7.76 -42.69 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.09 Total: -2.05 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.01 Total: -11.20 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.22 Total: -36.56 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.15 Total: -14.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.94 -7.76 -42.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597925566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.868 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds