Wall clock time and date at job start Thu Apr 9 2020 15:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47061 * 299.99784 * 3 2 1 6 6 H 1.48509 * 109.47013 * 59.99486 * 3 2 1 7 7 C 1.37878 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47241 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99979 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99963 * 180.02562 * 11 10 9 14 14 C 1.46918 * 120.63210 * 179.97438 * 13 11 10 15 15 C 1.53193 * 108.77968 * 233.62922 * 14 13 11 16 16 C 1.53045 * 109.30820 * 305.36509 * 15 14 13 17 17 C 1.50697 * 109.45841 * 181.38715 * 16 15 14 18 18 C 1.34517 * 125.79067 * 120.00264 * 17 16 15 19 19 C 1.41388 * 106.83576 * 179.97438 * 18 17 16 20 20 C 1.34511 * 106.84442 * 359.97438 * 19 18 17 21 21 O 1.34295 * 108.42007 * 0.27361 * 20 19 18 22 22 C 1.53036 * 109.53813 * 61.36363 * 16 15 14 23 23 C 1.46930 * 120.62905 * 0.02562 * 13 11 10 24 24 H 0.97006 * 120.00085 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47213 * 59.99256 * 9 7 2 26 26 H 1.09004 * 109.46944 * 300.00034 * 9 7 2 27 27 H 1.09006 * 109.46793 * 59.99838 * 10 9 7 28 28 H 1.08994 * 109.47055 * 300.00383 * 10 9 7 29 29 H 1.09006 * 109.59032 * 113.83554 * 14 13 11 30 30 H 1.09001 * 109.58589 * 353.41789 * 14 13 11 31 31 H 1.08996 * 109.49857 * 185.41407 * 15 14 13 32 32 H 1.08991 * 109.52307 * 65.32571 * 15 14 13 33 33 H 1.09004 * 109.45738 * 301.35696 * 16 15 14 34 34 H 1.07992 * 126.58259 * 359.93887 * 18 17 16 35 35 H 1.08001 * 126.57171 * 180.02562 * 19 18 17 36 36 H 1.08002 * 125.78644 * 179.97438 * 20 19 18 37 37 H 1.08989 * 109.49888 * 58.58788 * 22 16 15 38 38 H 1.09005 * 109.49782 * 178.68365 * 22 16 15 39 39 H 1.09003 * 109.58969 * 246.16068 * 23 13 11 40 40 H 1.08994 * 109.58800 * 6.58793 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0021 13 7 2.1657 -6.1344 0.0018 14 6 1.4452 -7.4147 0.0030 15 6 1.9533 -8.2655 1.1713 16 6 3.4747 -8.4004 1.0749 17 6 3.9745 -9.2651 2.2034 18 6 4.6443 -10.4239 2.0694 19 6 4.9162 -10.8931 3.3752 20 6 4.3968 -9.9926 4.2289 21 8 3.8228 -9.0117 3.5136 22 6 4.1185 -7.0153 1.1700 23 6 3.6349 -6.1505 0.0024 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8894 29 1 1.6273 -7.9375 -0.9361 30 1 0.3770 -7.2328 0.1209 31 1 1.4968 -9.2542 1.1269 32 1 1.6897 -7.7850 2.1134 33 1 3.7389 -8.8588 0.1218 34 1 4.9208 -10.9040 1.1424 35 1 5.4411 -11.8000 3.6368 36 1 4.4311 -10.0514 5.3068 37 1 3.8345 -6.5462 2.1119 38 1 5.2031 -7.1143 1.1248 39 1 3.9962 -6.5698 -0.9366 40 1 4.0114 -5.1344 0.1201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597925566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:07 Heat of formation + Delta-G solvation = -59.756309 kcal Electronic energy + Delta-G solvation = -21142.977741 eV Core-core repulsion = 17922.768171 eV Total energy + Delta-G solvation = -3220.209570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.48116 -41.14622 -38.58788 -35.60682 -34.72814 -33.76722 -33.13483 -31.94957 -30.05409 -27.89113 -25.99810 -24.45691 -23.49588 -22.74757 -21.99924 -20.98723 -19.76353 -18.89901 -18.25839 -17.54689 -16.97827 -16.65711 -16.63781 -16.39992 -15.67243 -15.23600 -15.07600 -14.87447 -14.47276 -14.19291 -13.92662 -13.69302 -13.65226 -13.37798 -13.28076 -13.15716 -12.84899 -12.45135 -12.41288 -12.25440 -11.94109 -11.84113 -11.58066 -11.51576 -11.27905 -10.79385 -10.65119 -10.57905 -9.63986 -9.32315 -8.17948 -6.32153 0.85627 1.42351 1.44008 1.57338 1.68531 1.75992 2.06345 2.19165 2.43498 3.15092 3.55539 3.64754 3.77729 3.97336 4.08630 4.17097 4.24104 4.31476 4.36990 4.43591 4.49416 4.52737 4.66571 4.75063 4.82178 4.84148 4.93011 4.99867 5.05905 5.08635 5.11946 5.26812 5.35722 5.48613 5.62121 5.65075 5.68222 5.85158 6.17414 6.28737 6.40691 6.86591 7.27117 7.38292 8.95125 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030654 B = 0.003247 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.213494 B = 8621.083977 C = 9036.375199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.116 4.116 11 C 0.509 3.491 12 O -0.592 6.592 13 N -0.614 5.614 14 C 0.109 3.891 15 C -0.119 4.119 16 C 0.000 4.000 17 C -0.018 4.018 18 C -0.216 4.216 19 C -0.225 4.225 20 C -0.055 4.055 21 O -0.198 6.198 22 C -0.125 4.125 23 C 0.102 3.898 24 H 0.263 0.737 25 H -0.018 1.018 26 H -0.021 1.021 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.129 0.871 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.227 0.773 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.940 -23.641 3.451 28.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.095 0.905 9 C 0.005 3.995 10 C -0.155 4.155 11 C 0.299 3.701 12 O -0.472 6.472 13 N -0.348 5.348 14 C -0.014 4.014 15 C -0.157 4.157 16 C -0.018 4.018 17 C -0.068 4.068 18 C -0.235 4.235 19 C -0.244 4.244 20 C -0.121 4.121 21 O -0.095 6.095 22 C -0.163 4.163 23 C -0.019 4.019 24 H 0.071 0.929 25 H 0.000 1.000 26 H -0.003 1.003 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.147 0.853 34 H 0.183 0.817 35 H 0.184 0.816 36 H 0.243 0.757 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.028 -23.299 3.561 27.428 hybrid contribution -0.324 0.741 0.302 0.864 sum 13.704 -22.557 3.862 26.675 Atomic orbital electron populations 1.70194 1.08377 1.27744 1.51588 1.26166 0.95732 1.04036 0.94648 0.85256 0.79367 0.77980 0.77530 1.17432 1.20568 1.20727 1.21740 0.94018 0.91504 1.50601 0.90481 1.18695 0.93699 0.92584 0.94538 1.21634 0.99283 0.90184 1.04437 1.21398 0.87634 0.86801 0.74232 1.90635 1.16720 1.88035 1.51846 1.48294 1.08206 1.05066 1.73202 1.21641 0.97060 0.83201 0.99454 1.21893 0.95327 1.00601 0.97910 1.19864 0.94149 0.93852 0.93933 1.22648 1.03421 0.98232 0.82472 1.21930 1.04876 0.96898 0.99820 1.22177 1.06620 1.02952 0.92670 1.24702 0.99958 0.88318 0.99165 1.84031 1.62256 1.44978 1.18208 1.21955 1.01880 0.93964 0.98468 1.22032 0.77384 1.02612 0.99882 0.92869 0.99962 1.00288 0.88229 0.87621 0.88681 0.91676 0.88935 0.93594 0.85324 0.81701 0.81592 0.75710 0.93034 0.87980 0.88027 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.39 13.29 21.45 0.28 -60.10 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.04 16 3 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 4 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.42 4.26 29.85 0.13 2.55 16 10 C -0.12 -4.78 3.99 29.85 0.12 -4.67 16 11 C 0.51 20.62 7.70 87.66 0.67 21.30 16 12 O -0.59 -30.25 15.39 -3.03 -0.05 -30.29 16 13 N -0.61 -17.47 2.97 -819.02 -2.43 -19.90 16 14 C 0.11 2.64 6.43 86.36 0.56 3.19 16 15 C -0.12 -2.40 5.34 30.67 0.16 -2.24 16 16 C 0.00 0.00 2.55 -11.51 -0.03 -0.03 16 17 C -0.02 -0.33 5.83 24.83 0.14 -0.19 16 18 C -0.22 -3.42 10.78 22.19 0.24 -3.18 16 19 C -0.23 -3.35 10.91 22.19 0.24 -3.11 16 20 C -0.05 -0.87 12.09 66.97 0.81 -0.06 16 21 O -0.20 -4.29 10.65 -2.47 -0.03 -4.31 16 22 C -0.12 -2.14 5.34 30.65 0.16 -1.98 16 23 C 0.10 1.96 6.34 86.34 0.55 2.51 16 24 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 25 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 26 H -0.02 -1.38 8.10 -2.38 -0.02 -1.40 16 27 H 0.10 3.68 7.69 -2.38 -0.02 3.66 16 28 H 0.11 3.78 7.94 -2.39 -0.02 3.76 16 29 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.06 2.00 7.00 -2.39 -0.02 1.98 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.13 1.38 8.10 -2.38 -0.02 1.36 16 34 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.23 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.88 5.93 -2.39 -0.01 1.87 16 Total: -1.00 -81.09 331.24 5.27 -75.82 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.01 Total: 8.99 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.45 Total: -16.84 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.15 Total: -80.01 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.07 Total: -34.61 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -81.09 5.27 -75.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597925566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.064 kcal (2) G-P(sol) polarization free energy of solvation -81.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds