Wall clock time and date at job start Thu Apr 9 2020 15:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35975 * 117.00347 * 2 1 4 4 C 1.38550 * 120.08331 * 0.24844 * 3 2 1 5 5 C 1.38239 * 120.01308 * 180.27518 * 4 3 2 6 6 C 1.50697 * 119.90973 * 179.72797 * 5 4 3 7 7 C 1.38273 * 120.18035 * 359.45295 * 5 4 3 8 8 C 1.50705 * 119.91809 * 180.27370 * 7 5 4 9 9 C 1.38200 * 120.16399 * 0.29504 * 7 5 4 10 10 C 1.38717 * 119.98435 * 359.97438 * 9 7 5 11 11 N 1.40126 * 120.09191 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99632 * 24.80087 * 11 10 9 13 13 O 1.21292 * 120.00411 * 5.52911 * 12 11 10 14 14 C 1.50702 * 119.99863 * 185.52950 * 12 11 10 15 15 H 1.09004 * 109.47033 * 60.00354 * 14 12 11 16 16 C 1.52999 * 109.47093 * 300.00189 * 14 12 11 17 17 C 1.50705 * 109.47123 * 179.97438 * 14 12 11 18 18 H 1.07996 * 119.99738 * 359.97438 * 17 14 12 19 19 C 1.37872 * 119.99817 * 180.02562 * 17 14 12 20 20 N 1.31518 * 120.00333 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00120 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46908 * 89.99648 * 21 19 17 23 23 H 1.48498 * 109.47622 * 210.00428 * 21 19 17 24 24 H 1.48502 * 109.46845 * 330.00538 * 21 19 17 25 25 H 1.08999 * 109.46846 * 300.00035 * 1 2 3 26 26 H 1.09001 * 109.46705 * 59.99493 * 1 2 3 27 27 H 1.08991 * 109.47753 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.98956 * 359.97438 * 4 3 2 29 29 H 1.08996 * 109.47173 * 269.72712 * 6 5 4 30 30 H 1.09004 * 109.47197 * 149.72645 * 6 5 4 31 31 H 1.09007 * 109.47254 * 29.72724 * 6 5 4 32 32 H 1.09005 * 109.46568 * 90.00242 * 8 7 5 33 33 H 1.09007 * 109.47080 * 209.99660 * 8 7 5 34 34 H 1.08989 * 109.47364 * 330.00176 * 8 7 5 35 35 H 1.08004 * 120.00641 * 179.97438 * 9 7 5 36 36 H 0.96998 * 120.00396 * 204.80408 * 11 10 9 37 37 H 1.08994 * 109.47540 * 60.00019 * 16 14 12 38 38 H 1.09003 * 109.47111 * 179.97438 * 16 14 12 39 39 H 1.09002 * 109.46798 * 299.99435 * 16 14 12 40 40 H 0.97000 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2935 2.3746 0.0052 5 6 1.9227 3.6055 -0.0006 6 6 1.1015 4.8691 -0.0011 7 6 3.3034 3.6805 -0.0001 8 6 3.9831 5.0256 -0.0001 9 6 4.0616 2.5251 0.0000 10 6 3.4374 1.2863 0.0001 11 7 4.2039 0.1133 0.0007 12 6 5.4593 0.1290 0.4908 13 8 5.8905 1.1305 1.0221 14 6 6.3274 -1.0977 0.3786 15 1 6.4583 -1.3554 -0.6725 16 6 5.6596 -2.2637 1.1102 17 6 7.6727 -0.8196 0.9982 18 1 7.8786 0.1488 1.4297 19 6 8.6409 -1.8010 1.0133 20 7 8.3907 -2.9798 0.4865 21 14 10.3087 -1.4561 1.7807 22 1 10.2745 -1.8152 3.2213 23 1 11.3469 -2.2651 1.0933 24 1 10.6304 -0.0134 1.6379 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 0.2149 2.3195 0.0088 29 1 0.9039 5.1736 -1.0288 30 1 1.6497 5.6589 0.5128 31 1 0.1571 4.6890 0.5125 32 1 4.1466 5.3500 1.0276 33 1 4.9416 4.9483 -0.5136 34 1 3.3529 5.7511 -0.5143 35 1 5.1399 2.5866 -0.0001 36 1 3.8311 -0.7100 -0.3516 37 1 4.6868 -2.4648 0.6617 38 1 6.2872 -3.1512 1.0287 39 1 5.5289 -2.0061 2.1613 40 1 9.0720 -3.6702 0.4969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597945522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:13 Heat of formation + Delta-G solvation = -59.867861 kcal Electronic energy + Delta-G solvation = -21598.628224 eV Core-core repulsion = 18378.413817 eV Total energy + Delta-G solvation = -3220.214407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50746 -38.80161 -37.65160 -34.58677 -33.79529 -31.63634 -31.51466 -30.13355 -27.93940 -26.96139 -25.32112 -25.11933 -22.91077 -21.91593 -20.56330 -19.31696 -17.82689 -16.89771 -16.39341 -15.77485 -15.71500 -15.34697 -14.44089 -14.32937 -14.13784 -13.95246 -13.82224 -13.64432 -13.05642 -12.75906 -12.62540 -12.37159 -12.14295 -12.02527 -11.80276 -11.52883 -11.23234 -11.06755 -10.98745 -10.79980 -10.64444 -10.61671 -10.29490 -9.97321 -9.74894 -8.99107 -8.65409 -8.35541 -8.17255 -7.29543 -6.03801 -4.07404 1.51897 1.59186 3.30373 3.34219 3.39912 3.46350 3.50305 3.79035 4.06431 4.47039 4.80748 4.97761 5.04075 5.09715 5.16575 5.26801 5.29628 5.38445 5.44896 5.55441 5.67236 5.74902 5.80058 5.94224 5.96062 6.08364 6.30671 6.37836 6.44309 6.62676 6.79027 6.82443 6.90993 6.97524 7.15042 7.44586 7.59551 7.74990 7.96494 8.10129 8.36858 9.00800 9.09245 9.58075 11.03860 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022831 B = 0.004644 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.108538 B = 6027.377276 C = 7128.540448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.318 6.318 3 C 0.081 3.919 4 C -0.184 4.184 5 C -0.086 4.086 6 C -0.108 4.108 7 C -0.100 4.100 8 C -0.108 4.108 9 C -0.100 4.100 10 C 0.142 3.858 11 N -0.677 5.677 12 C 0.519 3.481 13 O -0.525 6.525 14 C 0.031 3.969 15 H 0.057 0.943 16 C -0.134 4.134 17 C -0.502 4.502 18 H 0.075 0.925 19 C 0.059 3.941 20 N -0.896 5.896 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.272 1.272 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.156 0.844 36 H 0.411 0.589 37 H 0.013 0.987 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.604 9.460 -3.121 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.232 6.232 3 C 0.034 3.966 4 C -0.204 4.204 5 C -0.088 4.088 6 C -0.165 4.165 7 C -0.101 4.101 8 C -0.165 4.165 9 C -0.121 4.121 10 C 0.046 3.954 11 N -0.321 5.321 12 C 0.310 3.690 13 O -0.400 6.400 14 C 0.010 3.990 15 H 0.074 0.926 16 C -0.192 4.192 17 C -0.540 4.540 18 H 0.093 0.907 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.729 3.271 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.197 1.197 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.143 0.857 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.173 0.827 36 H 0.247 0.753 37 H 0.032 0.968 38 H 0.113 0.887 39 H 0.051 0.949 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.024 9.750 -2.769 18.960 hybrid contribution 0.281 -0.355 0.247 0.516 sum -15.743 9.395 -2.522 18.506 Atomic orbital electron populations 1.22970 0.78783 1.03593 1.00964 1.86029 1.20999 1.26637 1.89514 1.18668 0.90521 0.84702 1.02732 1.20756 0.99166 0.91293 1.09145 1.19389 0.93225 0.94301 1.01852 1.20737 0.98888 0.95017 1.01855 1.19562 0.92553 0.95362 1.02578 1.20727 1.00247 0.93361 1.02122 1.21278 1.01986 0.89150 0.99662 1.17323 0.86844 0.88260 1.03016 1.43977 1.15259 1.10447 1.62440 1.22266 0.79973 0.92026 0.74723 1.90485 1.72556 1.35244 1.41716 1.18915 0.93311 0.87656 0.99115 0.92559 1.21767 0.97174 1.02019 0.98279 1.21118 0.95409 0.99816 1.37696 0.90674 1.24945 0.98911 0.94947 0.95379 1.69872 1.34318 1.03828 1.45499 0.86434 0.83088 0.78421 0.79170 1.20661 1.21286 1.19714 0.92969 0.92987 0.88464 0.85668 0.91556 0.91393 0.92108 0.91427 0.91550 0.91778 0.82714 0.75340 0.96757 0.88650 0.94869 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.58 9.91 -19.66 -0.19 -4.78 16 3 C 0.08 1.28 6.70 -39.07 -0.26 1.01 16 4 C -0.18 -2.48 8.68 -39.47 -0.34 -2.82 16 5 C -0.09 -1.15 5.88 -104.61 -0.62 -1.76 16 6 C -0.11 -1.03 9.18 36.00 0.33 -0.70 16 7 C -0.10 -1.50 5.88 -104.62 -0.62 -2.11 16 8 C -0.11 -1.30 9.18 36.01 0.33 -0.97 16 9 C -0.10 -1.83 8.37 -39.42 -0.33 -2.16 16 10 C 0.14 2.62 6.45 -83.49 -0.54 2.08 16 11 N -0.68 -13.23 5.21 -9.75 -0.05 -13.28 16 12 C 0.52 12.10 6.96 -10.98 -0.08 12.03 16 13 O -0.53 -13.50 12.63 5.55 0.07 -13.43 16 14 C 0.03 0.78 2.65 -92.92 -0.25 0.53 16 15 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 16 C -0.13 -3.14 8.86 37.16 0.33 -2.81 16 17 C -0.50 -14.20 8.38 -34.44 -0.29 -14.48 16 18 H 0.08 2.23 6.75 -52.49 -0.35 1.87 16 19 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 20 N -0.90 -25.13 11.32 55.43 0.63 -24.51 16 21 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 26 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.60 6.69 -51.93 -0.35 0.25 16 31 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.06 0.62 6.69 -51.94 -0.35 0.28 16 35 H 0.16 3.16 5.79 -52.48 -0.30 2.86 16 36 H 0.41 7.23 7.62 -40.82 -0.31 6.92 16 37 H 0.01 0.27 7.45 -51.93 -0.39 -0.12 16 38 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -31.37 326.09 -6.66 -38.03 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.58 Total: 5.59 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.43 Total: -9.33 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.58 Total: -37.78 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.12 Total: -18.20 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.37 -6.66 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597945522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.835 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds