Wall clock time and date at job start Thu Apr 9 2020 15:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35975 * 117.00347 * 2 1 4 4 C 1.38550 * 120.08331 * 0.24844 * 3 2 1 5 5 C 1.38239 * 120.01308 * 180.27518 * 4 3 2 6 6 C 1.50697 * 119.90973 * 179.72797 * 5 4 3 7 7 C 1.38273 * 120.18035 * 359.45295 * 5 4 3 8 8 C 1.50705 * 119.91809 * 180.27370 * 7 5 4 9 9 C 1.38200 * 120.16399 * 0.29504 * 7 5 4 10 10 C 1.38717 * 119.98435 * 359.97438 * 9 7 5 11 11 N 1.40126 * 120.09191 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99632 * 24.80087 * 11 10 9 13 13 O 1.21292 * 120.00411 * 5.52911 * 12 11 10 14 14 C 1.50702 * 119.99863 * 185.52950 * 12 11 10 15 15 H 1.09004 * 109.47033 * 60.00354 * 14 12 11 16 16 C 1.52999 * 109.47093 * 300.00189 * 14 12 11 17 17 C 1.50705 * 109.47123 * 179.97438 * 14 12 11 18 18 H 1.07996 * 119.99738 * 359.97438 * 17 14 12 19 19 C 1.37872 * 119.99817 * 180.02562 * 17 14 12 20 20 N 1.31518 * 120.00333 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00120 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46908 * 89.99648 * 21 19 17 23 23 H 1.48498 * 109.47622 * 210.00428 * 21 19 17 24 24 H 1.48502 * 109.46845 * 330.00538 * 21 19 17 25 25 H 1.08999 * 109.46846 * 300.00035 * 1 2 3 26 26 H 1.09001 * 109.46705 * 59.99493 * 1 2 3 27 27 H 1.08991 * 109.47753 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.98956 * 359.97438 * 4 3 2 29 29 H 1.08996 * 109.47173 * 269.72712 * 6 5 4 30 30 H 1.09004 * 109.47197 * 149.72645 * 6 5 4 31 31 H 1.09007 * 109.47254 * 29.72724 * 6 5 4 32 32 H 1.09005 * 109.46568 * 90.00242 * 8 7 5 33 33 H 1.09007 * 109.47080 * 209.99660 * 8 7 5 34 34 H 1.08989 * 109.47364 * 330.00176 * 8 7 5 35 35 H 1.08004 * 120.00641 * 179.97438 * 9 7 5 36 36 H 0.96998 * 120.00396 * 204.80408 * 11 10 9 37 37 H 1.08994 * 109.47540 * 60.00019 * 16 14 12 38 38 H 1.09003 * 109.47111 * 179.97438 * 16 14 12 39 39 H 1.09002 * 109.46798 * 299.99435 * 16 14 12 40 40 H 0.97000 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2935 2.3746 0.0052 5 6 1.9227 3.6055 -0.0006 6 6 1.1015 4.8691 -0.0011 7 6 3.3034 3.6805 -0.0001 8 6 3.9831 5.0256 -0.0001 9 6 4.0616 2.5251 0.0000 10 6 3.4374 1.2863 0.0001 11 7 4.2039 0.1133 0.0007 12 6 5.4593 0.1290 0.4908 13 8 5.8905 1.1305 1.0221 14 6 6.3274 -1.0977 0.3786 15 1 6.4583 -1.3554 -0.6725 16 6 5.6596 -2.2637 1.1102 17 6 7.6727 -0.8196 0.9982 18 1 7.8786 0.1488 1.4297 19 6 8.6409 -1.8010 1.0133 20 7 8.3907 -2.9798 0.4865 21 14 10.3087 -1.4561 1.7807 22 1 10.2745 -1.8152 3.2213 23 1 11.3469 -2.2651 1.0933 24 1 10.6304 -0.0134 1.6379 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 0.2149 2.3195 0.0088 29 1 0.9039 5.1736 -1.0288 30 1 1.6497 5.6589 0.5128 31 1 0.1571 4.6890 0.5125 32 1 4.1466 5.3500 1.0276 33 1 4.9416 4.9483 -0.5136 34 1 3.3529 5.7511 -0.5143 35 1 5.1399 2.5866 -0.0001 36 1 3.8311 -0.7100 -0.3516 37 1 4.6868 -2.4648 0.6617 38 1 6.2872 -3.1512 1.0287 39 1 5.5289 -2.0061 2.1613 40 1 9.0720 -3.6702 0.4969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597945522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:12 Heat of formation + Delta-G solvation = -79.371888 kcal Electronic energy + Delta-G solvation = -21599.473982 eV Core-core repulsion = 18378.413817 eV Total energy + Delta-G solvation = -3221.060165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.82064 -40.33164 -38.74933 -36.12580 -35.81479 -33.10752 -32.69598 -31.79788 -28.80115 -28.03090 -27.24822 -26.40001 -24.57170 -23.23171 -21.79540 -21.00875 -19.12091 -18.36502 -18.10329 -17.38225 -16.96596 -16.69379 -16.22278 -15.92980 -15.24901 -15.09865 -14.93203 -14.91091 -14.65983 -14.45587 -13.59908 -13.56254 -13.41084 -13.10237 -13.01510 -12.92338 -12.74536 -12.67942 -12.56687 -12.27668 -12.21273 -12.02233 -11.99682 -11.78489 -11.11403 -11.05645 -10.60893 -10.29695 -9.42658 -8.56907 -8.17068 -6.28095 0.28608 0.41479 1.40760 1.41091 1.53161 1.80469 2.16270 2.37444 2.48097 2.78322 3.12731 3.81081 3.91044 4.07379 4.22529 4.29045 4.38461 4.44327 4.45546 4.68114 4.72381 4.75346 4.79260 4.82851 4.88170 4.90935 4.92667 4.96037 5.04805 5.20430 5.22767 5.33948 5.43889 5.61159 5.69861 5.74743 5.89658 5.93384 6.14929 6.47137 6.60552 6.80572 7.31416 7.42764 8.89218 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022831 B = 0.004644 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.108538 B = 6027.377276 C = 7128.540448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.338 6.338 3 C 0.085 3.915 4 C -0.181 4.181 5 C -0.075 4.075 6 C -0.108 4.108 7 C -0.113 4.113 8 C -0.106 4.106 9 C -0.123 4.123 10 C 0.097 3.903 11 N -0.663 5.663 12 C 0.520 3.480 13 O -0.559 6.559 14 C 0.028 3.972 15 H 0.045 0.955 16 C -0.120 4.120 17 C -0.529 4.529 18 H 0.051 0.949 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.274 1.274 24 H -0.278 1.278 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.163 0.837 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.418 0.582 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.023 0.977 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.303 10.539 -3.231 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.252 6.252 3 C 0.038 3.962 4 C -0.200 4.200 5 C -0.076 4.076 6 C -0.164 4.164 7 C -0.113 4.113 8 C -0.163 4.163 9 C -0.143 4.143 10 C 0.002 3.998 11 N -0.308 5.308 12 C 0.311 3.689 13 O -0.437 6.437 14 C 0.006 3.994 15 H 0.062 0.938 16 C -0.178 4.178 17 C -0.568 4.568 18 H 0.069 0.931 19 C -0.179 4.179 20 N -0.550 5.550 21 Si 0.784 3.216 22 H -0.200 1.200 23 H -0.199 1.199 24 H -0.203 1.203 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.135 0.865 28 H 0.180 0.820 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.255 0.745 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.778 10.819 -2.900 21.865 hybrid contribution 0.950 -0.648 0.232 1.173 sum -17.829 10.172 -2.667 20.699 Atomic orbital electron populations 1.23345 0.76066 1.05538 1.02391 1.86009 1.23792 1.26140 1.89250 1.18720 0.89584 0.86182 1.01706 1.21197 1.00867 0.90329 1.07601 1.19912 0.92710 0.96175 0.98770 1.20851 0.99107 0.92982 1.03489 1.19882 0.93687 0.95323 1.02444 1.20777 1.00208 0.92597 1.02692 1.21153 1.00773 0.90830 1.01574 1.17555 0.88245 0.87467 1.06517 1.43566 1.14091 1.11535 1.61559 1.21822 0.81150 0.90913 0.75019 1.90469 1.73660 1.35978 1.43605 1.18830 0.93060 0.89253 0.98211 0.93774 1.21575 0.98329 1.00213 0.97731 1.21243 0.97569 0.99184 1.38770 0.93055 1.25613 1.01924 0.94738 0.95631 1.69951 1.35313 1.04178 1.45574 0.85547 0.79375 0.77982 0.78691 1.19956 1.19877 1.20266 0.91729 0.91172 0.86513 0.81995 0.89652 0.90454 0.90072 0.90996 0.92576 0.88762 0.86162 0.74491 0.93332 0.90598 0.95789 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -9.12 9.91 -93.26 -0.92 -10.04 16 3 C 0.09 2.59 6.70 22.60 0.15 2.74 16 4 C -0.18 -4.30 8.68 22.34 0.19 -4.10 16 5 C -0.07 -1.77 5.88 -19.86 -0.12 -1.88 16 6 C -0.11 -1.55 9.18 71.24 0.65 -0.90 16 7 C -0.11 -3.31 5.88 -19.86 -0.12 -3.43 16 8 C -0.11 -2.46 9.18 71.24 0.65 -1.81 16 9 C -0.12 -4.68 8.37 22.38 0.19 -4.49 16 10 C 0.10 3.67 6.45 38.18 0.25 3.91 16 11 N -0.66 -26.90 5.21 -303.13 -1.58 -28.48 16 12 C 0.52 25.60 6.96 87.66 0.61 26.21 16 13 O -0.56 -30.71 12.63 -3.07 -0.04 -30.75 16 14 C 0.03 1.45 2.65 -12.28 -0.03 1.42 16 15 H 0.04 2.39 8.14 -2.38 -0.02 2.37 16 16 C -0.12 -5.75 8.86 71.98 0.64 -5.11 16 17 C -0.53 -31.24 8.38 25.60 0.21 -31.02 16 18 H 0.05 3.22 6.75 -2.91 -0.02 3.20 16 19 C 0.02 1.15 5.30 84.65 0.45 1.59 16 20 N -0.91 -51.81 11.32 21.45 0.24 -51.57 16 21 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 25 H 0.06 0.86 7.65 -2.39 -0.02 0.84 16 26 H 0.07 0.85 7.67 -2.39 -0.02 0.83 16 27 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.16 2.59 6.30 -2.91 -0.02 2.57 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.02 6.69 -2.38 -0.02 1.00 16 31 H 0.08 0.90 8.08 -2.38 -0.02 0.88 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 33 H 0.06 1.39 8.08 -2.38 -0.02 1.37 16 34 H 0.09 1.57 6.69 -2.39 -0.02 1.56 16 35 H 0.12 5.37 5.79 -2.91 -0.02 5.35 16 36 H 0.42 15.05 7.62 -92.71 -0.71 14.34 16 37 H 0.05 1.92 7.45 -2.39 -0.02 1.90 16 38 H 0.08 3.93 6.07 -2.39 -0.01 3.92 16 39 H 0.02 1.13 8.14 -2.39 -0.02 1.12 16 40 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -71.25 326.09 4.92 -66.33 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.35 Total: 22.49 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 4.85 Total: -15.45 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.34 Total: -80.05 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -0.96 Total: -40.79 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -71.25 4.92 -66.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597945522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.045 kcal (2) G-P(sol) polarization free energy of solvation -71.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds