Wall clock time and date at job start Thu Apr 9 2020 15:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35977 * 117.00166 * 2 1 4 4 C 1.38553 * 120.07938 * 0.21222 * 3 2 1 5 5 C 1.38240 * 120.01613 * 180.25523 * 4 3 2 6 6 C 1.50703 * 119.91501 * 179.76560 * 5 4 3 7 7 C 1.38278 * 120.17820 * 359.78331 * 5 4 3 8 8 C 1.50706 * 119.92108 * 180.02562 * 7 5 4 9 9 C 1.38199 * 120.16252 * 359.97438 * 7 5 4 10 10 C 1.38721 * 119.98372 * 359.97438 * 9 7 5 11 11 N 1.40126 * 120.08868 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99804 * 34.64356 * 11 10 9 13 13 O 1.21290 * 120.00503 * 355.55046 * 12 11 10 14 14 C 1.50702 * 119.99839 * 175.55288 * 12 11 10 15 15 H 1.09006 * 109.46925 * 299.99835 * 14 12 11 16 16 C 1.52993 * 109.47402 * 60.00174 * 14 12 11 17 17 C 1.50701 * 109.47003 * 180.02562 * 14 12 11 18 18 H 1.08001 * 120.00362 * 359.97438 * 17 14 12 19 19 C 1.37881 * 120.00114 * 179.97438 * 17 14 12 20 20 N 1.31519 * 119.99967 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00204 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.47259 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47241 * 120.00618 * 21 19 17 24 24 H 1.48503 * 109.47031 * 239.99876 * 21 19 17 25 25 H 1.09005 * 109.47262 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47527 * 299.99773 * 1 2 3 27 27 H 1.09007 * 109.47388 * 60.00049 * 1 2 3 28 28 H 1.08001 * 119.99591 * 0.02562 * 4 3 2 29 29 H 1.08994 * 109.46998 * 270.01894 * 6 5 4 30 30 H 1.09000 * 109.47121 * 30.01926 * 6 5 4 31 31 H 1.08998 * 109.47140 * 150.01831 * 6 5 4 32 32 H 1.08998 * 109.46761 * 269.98240 * 8 7 5 33 33 H 1.08993 * 109.46904 * 29.97854 * 8 7 5 34 34 H 1.08997 * 109.47209 * 149.97737 * 8 7 5 35 35 H 1.08005 * 120.00473 * 180.02562 * 9 7 5 36 36 H 0.96997 * 120.00353 * 214.64760 * 11 10 9 37 37 H 1.08998 * 109.47000 * 300.00245 * 16 14 12 38 38 H 1.09001 * 109.47748 * 180.02562 * 16 14 12 39 39 H 1.09006 * 109.47357 * 59.99926 * 16 14 12 40 40 H 0.97000 * 120.00177 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 0.0044 5 6 1.9223 3.6056 -0.0009 6 6 1.1010 4.8692 -0.0014 7 6 3.3030 3.6807 -0.0062 8 6 3.9827 5.0258 -0.0114 9 6 4.0613 2.5253 -0.0056 10 6 3.4372 1.2865 0.0009 11 7 4.2039 0.1136 0.0009 12 6 5.3792 0.0769 0.6594 13 8 5.8123 1.0812 1.1837 14 6 6.1555 -1.2120 0.7441 15 1 5.5502 -1.9685 1.2435 16 6 6.5070 -1.6894 -0.6663 17 6 7.4222 -0.9848 1.5283 18 1 7.6433 -0.0050 1.9252 19 6 8.2990 -2.0279 1.7390 20 7 8.0296 -3.2212 1.2561 21 14 9.8694 -1.7462 2.7104 22 1 9.9369 -0.3268 3.1416 23 1 9.8769 -2.6271 3.9059 24 1 11.0429 -2.0609 1.8564 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.2147 2.3195 0.0083 29 1 0.8993 5.1710 -1.0291 30 1 0.1587 4.6903 0.5164 31 1 1.6511 5.6603 0.5082 32 1 4.1430 5.3478 -1.0403 33 1 3.3539 5.7525 0.5030 34 1 4.9426 4.9499 0.4994 35 1 5.1396 2.5870 -0.0093 36 1 3.8887 -0.6719 -0.4729 37 1 5.5906 -1.8538 -1.2331 38 1 7.0681 -2.6219 -0.6051 39 1 7.1123 -0.9329 -1.1657 40 1 8.6466 -3.9549 1.4041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597945523.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:16 Heat of formation + Delta-G solvation = -59.630907 kcal Electronic energy + Delta-G solvation = -21587.294507 eV Core-core repulsion = 18367.090375 eV Total energy + Delta-G solvation = -3220.204132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48765 -38.75981 -37.66838 -34.57354 -33.77147 -31.65417 -31.50404 -30.13341 -27.93536 -26.97061 -25.32757 -25.11465 -22.88016 -21.93373 -20.54772 -19.30134 -17.80840 -16.88883 -16.29198 -15.86656 -15.71658 -15.44705 -14.48448 -14.23598 -14.19780 -14.02481 -13.82272 -13.59965 -12.99911 -12.77572 -12.60959 -12.44520 -12.10432 -11.97225 -11.75149 -11.55601 -11.20829 -11.02959 -10.98930 -10.75316 -10.67532 -10.66611 -10.27117 -9.96775 -9.63173 -8.97241 -8.64043 -8.36030 -8.20111 -7.36522 -6.03086 -4.06436 1.50257 1.58144 3.31294 3.33053 3.40565 3.48643 3.54207 3.79802 4.04051 4.47867 4.80350 4.98403 5.02204 5.10061 5.12937 5.24688 5.30502 5.36473 5.44710 5.50957 5.67603 5.74511 5.85334 5.90756 5.98499 6.07105 6.29310 6.39240 6.43254 6.62300 6.78803 6.82047 6.90708 6.96579 7.14918 7.45850 7.59837 7.75268 7.97643 8.11268 8.38639 9.02435 9.12902 9.59030 11.04624 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.004590 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.558095 B = 6098.863802 C = 7018.610950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.316 6.316 3 C 0.088 3.912 4 C -0.188 4.188 5 C -0.081 4.081 6 C -0.111 4.111 7 C -0.104 4.104 8 C -0.110 4.110 9 C -0.088 4.088 10 C 0.136 3.864 11 N -0.679 5.679 12 C 0.520 3.480 13 O -0.528 6.528 14 C 0.031 3.969 15 H 0.056 0.944 16 C -0.134 4.134 17 C -0.501 4.501 18 H 0.076 0.924 19 C 0.058 3.942 20 N -0.896 5.896 21 Si 0.900 3.100 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.149 0.851 36 H 0.409 0.591 37 H 0.013 0.987 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.700 10.261 -5.387 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.230 6.230 3 C 0.041 3.959 4 C -0.208 4.208 5 C -0.082 4.082 6 C -0.167 4.167 7 C -0.105 4.105 8 C -0.167 4.167 9 C -0.109 4.109 10 C 0.040 3.960 11 N -0.325 5.325 12 C 0.311 3.689 13 O -0.402 6.402 14 C 0.010 3.990 15 H 0.074 0.926 16 C -0.192 4.192 17 C -0.539 4.539 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.728 3.272 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.144 0.856 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.166 0.834 36 H 0.245 0.755 37 H 0.032 0.968 38 H 0.114 0.886 39 H 0.052 0.948 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.153 10.545 -4.971 19.119 hybrid contribution 0.274 -0.381 0.274 0.543 sum -14.880 10.165 -4.697 18.622 Atomic orbital electron populations 1.22983 0.78816 1.03636 1.00962 1.86058 1.20963 1.26592 1.89339 1.18777 0.90683 0.84673 1.01765 1.20772 0.99217 0.91306 1.09464 1.19395 0.93223 0.94319 1.01264 1.20785 0.98924 0.95067 1.01944 1.19549 0.92597 0.95362 1.02990 1.20771 1.00534 0.93439 1.01924 1.21143 1.01476 0.89308 0.98926 1.17260 0.86769 0.88219 1.03704 1.43925 1.21858 1.12995 1.53725 1.22249 0.78855 0.93114 0.74708 1.90510 1.67587 1.36706 1.45445 1.18905 0.95507 0.88391 0.96205 0.92634 1.21763 0.98713 1.03795 0.94923 1.21168 1.03077 0.97105 1.32557 0.90632 1.24951 0.98434 0.94963 0.95885 1.69882 1.37085 1.00745 1.45823 0.86387 0.82737 0.78479 0.79602 1.19541 1.21051 1.21036 0.88432 0.92933 0.92998 0.85635 0.91480 0.92104 0.91177 0.91575 0.91548 0.91425 0.83366 0.75476 0.96832 0.88641 0.94839 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.60 10.05 -19.67 -0.20 -4.80 16 3 C 0.09 1.39 6.70 -39.07 -0.26 1.13 16 4 C -0.19 -2.53 8.69 -39.46 -0.34 -2.87 16 5 C -0.08 -1.07 5.88 -104.60 -0.62 -1.68 16 6 C -0.11 -1.04 9.60 36.01 0.35 -0.70 16 7 C -0.10 -1.55 5.88 -104.62 -0.62 -2.16 16 8 C -0.11 -1.31 9.60 36.01 0.35 -0.96 16 9 C -0.09 -1.59 8.35 -39.42 -0.33 -1.92 16 10 C 0.14 2.51 6.32 -83.50 -0.53 1.98 16 11 N -0.68 -13.28 5.12 -9.75 -0.05 -13.33 16 12 C 0.52 12.20 7.00 -10.99 -0.08 12.12 16 13 O -0.53 -13.68 12.88 5.55 0.07 -13.61 16 14 C 0.03 0.78 2.64 -92.93 -0.25 0.54 16 15 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 16 C -0.13 -3.10 8.86 37.15 0.33 -2.77 16 17 C -0.50 -14.24 8.37 -34.44 -0.29 -14.53 16 18 H 0.08 2.26 6.75 -52.49 -0.35 1.91 16 19 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 20 N -0.90 -25.23 11.32 55.43 0.63 -24.60 16 21 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 27 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 28 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 0.61 5.93 -51.93 -0.31 0.30 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.66 5.93 -51.93 -0.31 0.35 16 34 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.15 2.97 6.19 -52.48 -0.33 2.64 16 36 H 0.41 7.18 7.85 -40.82 -0.32 6.86 16 37 H 0.01 0.25 7.47 -51.93 -0.39 -0.14 16 38 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -31.70 326.26 -6.57 -38.27 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.53 Total: 5.31 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.39 Total: -9.00 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.58 Total: -37.93 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.13 Total: -18.41 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.70 -6.57 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597945523.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.360 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds