Wall clock time and date at job start Thu Apr 9 2020 15:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35977 * 117.00166 * 2 1 4 4 C 1.38553 * 120.07938 * 0.21222 * 3 2 1 5 5 C 1.38240 * 120.01613 * 180.25523 * 4 3 2 6 6 C 1.50703 * 119.91501 * 179.76560 * 5 4 3 7 7 C 1.38278 * 120.17820 * 359.78331 * 5 4 3 8 8 C 1.50706 * 119.92108 * 180.02562 * 7 5 4 9 9 C 1.38199 * 120.16252 * 359.97438 * 7 5 4 10 10 C 1.38721 * 119.98372 * 359.97438 * 9 7 5 11 11 N 1.40126 * 120.08868 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99804 * 34.64356 * 11 10 9 13 13 O 1.21290 * 120.00503 * 355.55046 * 12 11 10 14 14 C 1.50702 * 119.99839 * 175.55288 * 12 11 10 15 15 H 1.09006 * 109.46925 * 299.99835 * 14 12 11 16 16 C 1.52993 * 109.47402 * 60.00174 * 14 12 11 17 17 C 1.50701 * 109.47003 * 180.02562 * 14 12 11 18 18 H 1.08001 * 120.00362 * 359.97438 * 17 14 12 19 19 C 1.37881 * 120.00114 * 179.97438 * 17 14 12 20 20 N 1.31519 * 119.99967 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00204 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.47259 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47241 * 120.00618 * 21 19 17 24 24 H 1.48503 * 109.47031 * 239.99876 * 21 19 17 25 25 H 1.09005 * 109.47262 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47527 * 299.99773 * 1 2 3 27 27 H 1.09007 * 109.47388 * 60.00049 * 1 2 3 28 28 H 1.08001 * 119.99591 * 0.02562 * 4 3 2 29 29 H 1.08994 * 109.46998 * 270.01894 * 6 5 4 30 30 H 1.09000 * 109.47121 * 30.01926 * 6 5 4 31 31 H 1.08998 * 109.47140 * 150.01831 * 6 5 4 32 32 H 1.08998 * 109.46761 * 269.98240 * 8 7 5 33 33 H 1.08993 * 109.46904 * 29.97854 * 8 7 5 34 34 H 1.08997 * 109.47209 * 149.97737 * 8 7 5 35 35 H 1.08005 * 120.00473 * 180.02562 * 9 7 5 36 36 H 0.96997 * 120.00353 * 214.64760 * 11 10 9 37 37 H 1.08998 * 109.47000 * 300.00245 * 16 14 12 38 38 H 1.09001 * 109.47748 * 180.02562 * 16 14 12 39 39 H 1.09006 * 109.47357 * 59.99926 * 16 14 12 40 40 H 0.97000 * 120.00177 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 0.0044 5 6 1.9223 3.6056 -0.0009 6 6 1.1010 4.8692 -0.0014 7 6 3.3030 3.6807 -0.0062 8 6 3.9827 5.0258 -0.0114 9 6 4.0613 2.5253 -0.0056 10 6 3.4372 1.2865 0.0009 11 7 4.2039 0.1136 0.0009 12 6 5.3792 0.0769 0.6594 13 8 5.8123 1.0812 1.1837 14 6 6.1555 -1.2120 0.7441 15 1 5.5502 -1.9685 1.2435 16 6 6.5070 -1.6894 -0.6663 17 6 7.4222 -0.9848 1.5283 18 1 7.6433 -0.0050 1.9252 19 6 8.2990 -2.0279 1.7390 20 7 8.0296 -3.2212 1.2561 21 14 9.8694 -1.7462 2.7104 22 1 9.9369 -0.3268 3.1416 23 1 9.8769 -2.6271 3.9059 24 1 11.0429 -2.0609 1.8564 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.2147 2.3195 0.0083 29 1 0.8993 5.1710 -1.0291 30 1 0.1587 4.6903 0.5164 31 1 1.6511 5.6603 0.5082 32 1 4.1430 5.3478 -1.0403 33 1 3.3539 5.7525 0.5030 34 1 4.9426 4.9499 0.4994 35 1 5.1396 2.5870 -0.0093 36 1 3.8887 -0.6719 -0.4729 37 1 5.5906 -1.8538 -1.2331 38 1 7.0681 -2.6219 -0.6051 39 1 7.1123 -0.9329 -1.1657 40 1 8.6466 -3.9549 1.4041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597945523.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:15 Heat of formation + Delta-G solvation = -79.511783 kcal Electronic energy + Delta-G solvation = -21588.156607 eV Core-core repulsion = 18367.090375 eV Total energy + Delta-G solvation = -3221.066231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.78935 -40.31531 -38.76529 -36.11613 -35.80048 -33.09739 -32.70330 -31.80560 -28.80292 -28.03142 -27.25006 -26.39715 -24.55789 -23.23066 -21.77906 -20.99958 -19.10660 -18.32992 -18.10151 -17.35884 -17.11533 -16.68795 -16.35912 -15.71184 -15.29711 -15.11961 -15.02243 -14.89081 -14.58520 -14.50130 -13.62386 -13.54732 -13.36616 -13.12495 -13.01395 -12.90090 -12.73060 -12.64528 -12.59365 -12.27232 -12.21108 -12.03975 -11.95614 -11.73994 -11.07571 -10.99219 -10.61037 -10.33120 -9.44554 -8.63243 -8.17055 -6.28161 0.28210 0.41222 1.39113 1.40706 1.54498 1.81162 2.18617 2.37119 2.48010 2.76877 3.12362 3.82708 3.91416 4.07206 4.17414 4.29335 4.38694 4.43309 4.43465 4.68068 4.73471 4.75328 4.76818 4.80608 4.88365 4.92600 4.94792 4.97276 5.06943 5.15337 5.26055 5.33642 5.45050 5.62650 5.70565 5.75349 5.89743 5.92926 6.15312 6.47082 6.61069 6.80901 7.33095 7.43668 8.89230 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.004590 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.558095 B = 6098.863802 C = 7018.610950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.090 3.910 4 C -0.185 4.185 5 C -0.070 4.070 6 C -0.110 4.110 7 C -0.116 4.116 8 C -0.108 4.108 9 C -0.110 4.110 10 C 0.091 3.909 11 N -0.664 5.664 12 C 0.521 3.479 13 O -0.563 6.563 14 C 0.028 3.972 15 H 0.042 0.958 16 C -0.120 4.120 17 C -0.529 4.529 18 H 0.050 0.950 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.959 3.041 22 H -0.279 1.279 23 H -0.274 1.274 24 H -0.272 1.272 25 H 0.116 0.884 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.162 0.838 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.115 0.885 36 H 0.417 0.583 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 11.455 -5.829 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.043 3.957 4 C -0.204 4.204 5 C -0.071 4.071 6 C -0.166 4.166 7 C -0.117 4.117 8 C -0.164 4.164 9 C -0.130 4.130 10 C -0.003 4.003 11 N -0.310 5.310 12 C 0.312 3.688 13 O -0.441 6.441 14 C 0.007 3.993 15 H 0.059 0.941 16 C -0.178 4.178 17 C -0.567 4.567 18 H 0.069 0.931 19 C -0.179 4.179 20 N -0.550 5.550 21 Si 0.784 3.216 22 H -0.204 1.204 23 H -0.199 1.199 24 H -0.198 1.198 25 H 0.134 0.866 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.180 0.820 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.133 0.867 36 H 0.254 0.746 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.700 11.728 -5.442 21.920 hybrid contribution 0.877 -0.716 0.381 1.195 sum -16.823 11.012 -5.061 20.734 Atomic orbital electron populations 1.23351 0.76114 1.05521 1.02414 1.86034 1.23766 1.26218 1.89123 1.18830 0.89794 0.86116 1.00961 1.21206 1.00885 0.90357 1.07911 1.19917 0.92748 0.96150 0.98262 1.20896 0.99101 0.93018 1.03578 1.19876 0.93695 0.95373 1.02743 1.20822 1.00013 0.92548 1.03059 1.21038 1.00314 0.90891 1.00763 1.17506 0.88124 0.87458 1.07234 1.43512 1.20697 1.14065 1.52724 1.21816 0.79948 0.91965 0.75111 1.90489 1.68838 1.37438 1.47297 1.18816 0.94608 0.89097 0.96804 0.94068 1.21574 0.99937 1.02201 0.94132 1.21278 1.05051 0.96371 1.33999 0.93133 1.25619 1.01047 0.94697 0.96577 1.69960 1.37970 1.01114 1.45981 0.85492 0.79494 0.77894 0.78701 1.20410 1.19943 1.19757 0.86583 0.91782 0.91038 0.82027 0.89569 0.90149 0.90189 0.90059 0.88923 0.93071 0.86674 0.74600 0.93311 0.90644 0.95525 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -9.33 10.05 -93.29 -0.94 -10.27 16 3 C 0.09 2.76 6.70 22.60 0.15 2.91 16 4 C -0.18 -4.40 8.69 22.35 0.19 -4.20 16 5 C -0.07 -1.64 5.88 -19.85 -0.12 -1.76 16 6 C -0.11 -1.56 9.60 71.24 0.68 -0.87 16 7 C -0.12 -3.37 5.88 -19.86 -0.12 -3.48 16 8 C -0.11 -2.44 9.60 71.24 0.68 -1.76 16 9 C -0.11 -4.12 8.35 22.38 0.19 -3.94 16 10 C 0.09 3.44 6.32 38.18 0.24 3.68 16 11 N -0.66 -26.99 5.12 -303.15 -1.55 -28.54 16 12 C 0.52 25.78 7.00 87.66 0.61 26.39 16 13 O -0.56 -31.16 12.88 -3.06 -0.04 -31.20 16 14 C 0.03 1.47 2.64 -12.29 -0.03 1.44 16 15 H 0.04 2.27 8.14 -2.38 -0.02 2.25 16 16 C -0.12 -5.72 8.86 71.98 0.64 -5.08 16 17 C -0.53 -31.37 8.37 25.60 0.21 -31.16 16 18 H 0.05 3.20 6.75 -2.91 -0.02 3.18 16 19 C 0.02 1.13 5.30 84.65 0.45 1.58 16 20 N -0.91 -51.95 11.32 21.45 0.24 -51.70 16 21 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.06 0.89 7.65 -2.39 -0.02 0.87 16 27 H 0.07 0.88 7.67 -2.38 -0.02 0.86 16 28 H 0.16 2.61 6.30 -2.91 -0.02 2.60 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.08 1.02 5.93 -2.39 -0.01 1.00 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 1.57 5.93 -2.39 -0.01 1.56 16 34 H 0.05 1.31 8.08 -2.39 -0.02 1.29 16 35 H 0.12 5.03 6.19 -2.91 -0.02 5.01 16 36 H 0.42 14.99 7.85 -92.71 -0.73 14.26 16 37 H 0.05 1.91 7.47 -2.39 -0.02 1.89 16 38 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 39 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -72.05 326.26 4.98 -67.07 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.33 Total: 21.83 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 4.90 Total: -14.82 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -1.31 Total: -80.25 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.98 Total: -41.47 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -72.05 4.98 -67.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597945523.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.442 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds