Wall clock time and date at job start Thu Apr 9 2020 15:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50691 * 109.47072 * 2 1 4 4 C 1.40365 * 126.44769 * 264.99571 * 3 2 1 5 5 C 1.36545 * 106.71279 * 180.02562 * 4 3 2 6 6 C 1.46651 * 125.98500 * 180.02562 * 5 4 3 7 7 O 1.21692 * 120.00607 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99494 * 180.02562 * 6 5 4 9 9 C 1.47062 * 136.05905 * 359.62880 * 8 6 5 10 10 C 1.53759 * 87.88727 * 152.96143 * 9 8 6 11 11 C 1.50702 * 114.08534 * 139.77899 * 10 9 8 12 12 H 1.07996 * 120.00151 * 266.56278 * 11 10 9 13 13 C 1.37878 * 120.00033 * 86.56125 * 11 10 9 14 14 N 1.31515 * 120.00190 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99969 * 0.02562 * 13 11 10 16 16 H 1.48490 * 109.47401 * 89.99656 * 15 13 11 17 17 H 1.48504 * 109.46806 * 209.99893 * 15 13 11 18 18 H 1.48503 * 109.46886 * 329.99237 * 15 13 11 19 19 C 1.47073 * 136.05395 * 180.02562 * 8 6 5 20 20 O 1.34914 * 108.02255 * 0.02562 * 5 4 3 21 21 C 1.33934 * 109.38452 * 359.97438 * 20 5 4 22 22 C 1.50707 * 125.61325 * 179.97438 * 21 20 5 23 23 C 1.52997 * 109.46868 * 269.97734 * 22 21 20 24 24 H 1.08998 * 109.46918 * 179.97438 * 1 2 3 25 25 H 1.08988 * 109.46944 * 300.00216 * 1 2 3 26 26 H 1.08999 * 109.46657 * 60.00072 * 1 2 3 27 27 H 1.09001 * 109.47216 * 239.99706 * 2 1 3 28 28 H 1.08999 * 109.46657 * 119.99928 * 2 1 3 29 29 H 1.08004 * 126.64234 * 0.04001 * 4 3 2 30 30 H 1.09000 * 113.46780 * 267.69382 * 9 8 6 31 31 H 1.08994 * 113.46953 * 38.13621 * 9 8 6 32 32 H 1.08993 * 114.57827 * 272.65939 * 10 9 8 33 33 H 0.96998 * 119.99909 * 180.02562 * 14 13 11 34 34 H 1.09004 * 113.46720 * 321.85967 * 19 8 6 35 35 H 1.08996 * 113.46725 * 92.30607 * 19 8 6 36 36 H 1.09003 * 109.46796 * 29.97686 * 22 21 20 37 37 H 1.08999 * 109.46617 * 149.98035 * 22 21 20 38 38 H 1.08999 * 109.47345 * 300.00092 * 23 22 21 39 39 H 1.08997 * 109.47151 * 60.00159 * 23 22 21 40 40 H 1.09005 * 109.46774 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.4032 2.1741 -1.1248 5 6 2.7942 3.3991 -0.6654 6 6 3.2658 4.5176 -1.4883 7 8 3.3341 4.3973 -2.6973 8 7 3.6235 5.6790 -0.9054 9 6 3.6758 6.2026 0.4679 10 6 4.8017 7.1423 0.0060 11 6 4.7154 8.5336 0.5788 12 1 4.2097 9.3135 0.0290 13 6 5.2820 8.8107 1.8049 14 7 5.2071 10.0249 2.3046 15 14 6.1572 7.4618 2.7556 16 1 7.5925 7.4397 2.3756 17 1 6.0347 7.7235 4.2123 18 1 5.5399 6.1497 2.4349 19 6 4.1267 6.9829 -1.3636 20 8 2.6707 3.4000 0.6780 21 6 2.2114 2.2088 1.0830 22 6 1.9399 1.8124 2.5115 23 6 3.2025 1.1976 3.1188 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3829 1.8481 -2.1543 30 1 2.7683 6.7269 0.7674 31 1 3.9984 5.4643 1.2019 32 1 5.8022 6.7139 0.0641 33 1 5.6060 10.2199 3.1670 34 1 4.8336 6.9093 -2.1900 35 1 3.3380 7.7126 -1.5464 36 1 1.6530 2.6939 3.0848 37 1 1.1311 1.0822 2.5383 38 1 3.4895 0.3162 2.5454 39 1 4.0113 1.9278 3.0918 40 1 3.0059 0.9105 4.1518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598033001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:22 Heat of formation + Delta-G solvation = -1.836516 kcal Electronic energy + Delta-G solvation = -21548.777500 eV Core-core repulsion = 18331.079521 eV Total energy + Delta-G solvation = -3217.697979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.68008 -39.53701 -37.30965 -35.61061 -33.65422 -32.68189 -31.26457 -30.12537 -28.35800 -25.70448 -25.13474 -24.48467 -23.30940 -21.59753 -20.82206 -19.65844 -18.47981 -17.29772 -16.93327 -16.38334 -15.84528 -15.54537 -14.96813 -14.77114 -14.26403 -14.01670 -13.84594 -13.48199 -13.18404 -13.01665 -12.81160 -12.65595 -12.56643 -12.39736 -11.85497 -11.78130 -11.68255 -11.59678 -11.37689 -10.94852 -10.90414 -10.72579 -10.14061 -10.02371 -9.68098 -9.52061 -9.25422 -8.68552 -8.46440 -8.05649 -6.23221 -4.26155 1.21607 2.30907 2.73780 3.20032 3.28785 3.30135 3.36400 3.51601 4.29389 4.47846 4.65235 4.68005 4.81889 4.99420 4.99976 5.11496 5.16459 5.19221 5.35981 5.51714 5.56180 5.62332 5.65952 5.69893 5.81677 5.88034 5.89808 5.95581 6.02586 6.04389 6.10431 6.22319 6.34936 6.42166 6.45732 6.47128 7.05954 7.11138 7.51639 8.14961 8.32497 8.46771 8.80170 9.37757 10.88646 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.005107 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.595596 B = 5481.096945 C = 6553.950648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C -0.188 4.188 4 C -0.126 4.126 5 C -0.057 4.057 6 C 0.616 3.384 7 O -0.542 6.542 8 N -0.634 5.634 9 C 0.088 3.912 10 C -0.006 4.006 11 C -0.513 4.513 12 H 0.081 0.919 13 C 0.078 3.922 14 N -0.891 5.891 15 Si 0.873 3.127 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.260 1.260 19 C 0.116 3.884 20 O -0.151 6.151 21 C 0.014 3.986 22 C -0.047 4.047 23 C -0.151 4.151 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.156 0.844 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.267 0.733 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.044 -19.262 1.166 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.189 4.189 4 C -0.147 4.147 5 C -0.109 4.109 6 C 0.405 3.595 7 O -0.423 6.423 8 N -0.366 5.366 9 C -0.034 4.034 10 C -0.026 4.026 11 C -0.551 4.551 12 H 0.099 0.901 13 C -0.125 4.125 14 N -0.527 5.527 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.184 1.184 19 C -0.005 4.005 20 O -0.046 6.046 21 C -0.039 4.039 22 C -0.084 4.084 23 C -0.208 4.208 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.174 0.826 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.937 -19.108 0.790 20.344 hybrid contribution 0.367 -0.673 0.509 0.920 sum -6.571 -19.781 1.299 20.885 Atomic orbital electron populations 1.21762 0.94994 1.01455 1.02303 1.19907 0.95661 0.90608 1.02634 1.20086 1.08545 0.98409 0.91857 1.21711 1.00934 0.91869 1.00202 1.22125 1.10530 0.97872 0.80414 1.16096 0.77630 0.80234 0.85550 1.90822 1.56852 1.82195 1.12445 1.49900 1.62123 1.11455 1.13165 1.24063 1.01624 0.95360 0.82378 1.20824 0.93597 0.96345 0.91848 1.20753 1.37246 0.92856 1.04251 0.90089 1.24990 0.95088 0.95228 0.97215 1.69889 1.44326 1.19619 1.18904 0.86922 0.80671 0.83100 0.79332 1.20073 1.21160 1.18411 1.23197 0.97102 0.80655 0.99573 1.84132 1.64599 1.33571 1.22308 1.22580 1.00868 0.83604 0.96839 1.20166 0.99404 1.01725 0.87079 1.21781 0.97101 1.01258 1.00648 0.92448 0.92690 0.92467 0.90920 0.91117 0.82608 0.89525 0.91876 0.92009 0.92318 0.91584 0.89704 0.89667 0.88749 0.92182 0.91984 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.90 37.16 0.37 -0.83 16 2 C -0.05 -0.47 5.97 -27.88 -0.17 -0.63 16 3 C -0.19 -2.40 5.39 -104.93 -0.57 -2.96 16 4 C -0.13 -1.93 10.57 -39.39 -0.42 -2.35 16 5 C -0.06 -1.02 7.09 -36.80 -0.26 -1.29 16 6 C 0.62 12.60 8.04 -12.86 -0.10 12.50 16 7 O -0.54 -12.12 17.64 5.20 0.09 -12.03 16 8 N -0.63 -13.04 3.69 -186.60 -0.69 -13.73 16 9 C 0.09 1.82 6.83 -8.37 -0.06 1.76 16 10 C -0.01 -0.14 2.98 -91.11 -0.27 -0.42 16 11 C -0.51 -13.32 9.37 -34.44 -0.32 -13.65 16 12 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 13 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 15 Si 0.87 20.07 27.15 -169.99 -4.61 15.45 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.26 -5.66 5.73 56.52 0.32 -5.34 16 19 C 0.12 2.36 8.18 -8.49 -0.07 2.29 16 20 O -0.15 -2.56 9.25 4.99 0.05 -2.51 16 21 C 0.01 0.19 6.57 -35.41 -0.23 -0.05 16 22 C -0.05 -0.45 6.16 -27.88 -0.17 -0.62 16 23 C -0.15 -1.33 9.89 37.16 0.37 -0.96 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.44 7.75 -51.94 -0.40 0.04 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.55 8.01 -51.93 -0.42 0.13 16 29 H 0.16 2.20 8.06 -52.48 -0.42 1.77 16 30 H 0.09 1.77 8.10 -51.93 -0.42 1.35 16 31 H 0.06 1.29 6.51 -51.93 -0.34 0.95 16 32 H 0.06 1.38 7.03 -51.93 -0.37 1.01 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.70 7.47 -51.93 -0.39 0.31 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -30.37 336.55 -7.51 -37.88 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.19 Total: -0.06 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.00 Total: -5.20 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.09 Total: -38.60 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.14 Total: -14.54 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.61 Total: 15.45 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.37 -7.51 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.042 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds