Wall clock time and date at job start Thu Apr 9 2020 15:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50691 * 109.47072 * 2 1 4 4 C 1.40365 * 126.44769 * 264.99571 * 3 2 1 5 5 C 1.36545 * 106.71279 * 180.02562 * 4 3 2 6 6 C 1.46651 * 125.98500 * 180.02562 * 5 4 3 7 7 O 1.21692 * 120.00607 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99494 * 180.02562 * 6 5 4 9 9 C 1.47062 * 136.05905 * 359.62880 * 8 6 5 10 10 C 1.53759 * 87.88727 * 152.96143 * 9 8 6 11 11 C 1.50702 * 114.08534 * 139.77899 * 10 9 8 12 12 H 1.07996 * 120.00151 * 266.56278 * 11 10 9 13 13 C 1.37878 * 120.00033 * 86.56125 * 11 10 9 14 14 N 1.31515 * 120.00190 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99969 * 0.02562 * 13 11 10 16 16 H 1.48490 * 109.47401 * 89.99656 * 15 13 11 17 17 H 1.48504 * 109.46806 * 209.99893 * 15 13 11 18 18 H 1.48503 * 109.46886 * 329.99237 * 15 13 11 19 19 C 1.47073 * 136.05395 * 180.02562 * 8 6 5 20 20 O 1.34914 * 108.02255 * 0.02562 * 5 4 3 21 21 C 1.33934 * 109.38452 * 359.97438 * 20 5 4 22 22 C 1.50707 * 125.61325 * 179.97438 * 21 20 5 23 23 C 1.52997 * 109.46868 * 269.97734 * 22 21 20 24 24 H 1.08998 * 109.46918 * 179.97438 * 1 2 3 25 25 H 1.08988 * 109.46944 * 300.00216 * 1 2 3 26 26 H 1.08999 * 109.46657 * 60.00072 * 1 2 3 27 27 H 1.09001 * 109.47216 * 239.99706 * 2 1 3 28 28 H 1.08999 * 109.46657 * 119.99928 * 2 1 3 29 29 H 1.08004 * 126.64234 * 0.04001 * 4 3 2 30 30 H 1.09000 * 113.46780 * 267.69382 * 9 8 6 31 31 H 1.08994 * 113.46953 * 38.13621 * 9 8 6 32 32 H 1.08993 * 114.57827 * 272.65939 * 10 9 8 33 33 H 0.96998 * 119.99909 * 180.02562 * 14 13 11 34 34 H 1.09004 * 113.46720 * 321.85967 * 19 8 6 35 35 H 1.08996 * 113.46725 * 92.30607 * 19 8 6 36 36 H 1.09003 * 109.46796 * 29.97686 * 22 21 20 37 37 H 1.08999 * 109.46617 * 149.98035 * 22 21 20 38 38 H 1.08999 * 109.47345 * 300.00092 * 23 22 21 39 39 H 1.08997 * 109.47151 * 60.00159 * 23 22 21 40 40 H 1.09005 * 109.46774 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.4032 2.1741 -1.1248 5 6 2.7942 3.3991 -0.6654 6 6 3.2658 4.5176 -1.4883 7 8 3.3341 4.3973 -2.6973 8 7 3.6235 5.6790 -0.9054 9 6 3.6758 6.2026 0.4679 10 6 4.8017 7.1423 0.0060 11 6 4.7154 8.5336 0.5788 12 1 4.2097 9.3135 0.0290 13 6 5.2820 8.8107 1.8049 14 7 5.2071 10.0249 2.3046 15 14 6.1572 7.4618 2.7556 16 1 7.5925 7.4397 2.3756 17 1 6.0347 7.7235 4.2123 18 1 5.5399 6.1497 2.4349 19 6 4.1267 6.9829 -1.3636 20 8 2.6707 3.4000 0.6780 21 6 2.2114 2.2088 1.0830 22 6 1.9399 1.8124 2.5115 23 6 3.2025 1.1976 3.1188 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3829 1.8481 -2.1543 30 1 2.7683 6.7269 0.7674 31 1 3.9984 5.4643 1.2019 32 1 5.8022 6.7139 0.0641 33 1 5.6060 10.2199 3.1670 34 1 4.8336 6.9093 -2.1900 35 1 3.3380 7.7126 -1.5464 36 1 1.6530 2.6939 3.0848 37 1 1.1311 1.0822 2.5383 38 1 3.4895 0.3162 2.5454 39 1 4.0113 1.9278 3.0918 40 1 3.0059 0.9105 4.1518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:21 Heat of formation + Delta-G solvation = -19.455656 kcal Electronic energy + Delta-G solvation = -21549.541524 eV Core-core repulsion = 18331.079521 eV Total energy + Delta-G solvation = -3218.462002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.83761 -41.18229 -38.96980 -36.50941 -34.71214 -34.50453 -32.24603 -31.75670 -29.57761 -27.35315 -26.86132 -25.34821 -24.35933 -22.70848 -22.17118 -21.14557 -19.85282 -19.19293 -18.41193 -17.63205 -17.32416 -16.73841 -16.53583 -15.93109 -15.65253 -15.17375 -15.02614 -14.77229 -14.57420 -14.26757 -14.12131 -13.81683 -13.55768 -13.49258 -13.36324 -13.30473 -12.72856 -12.59942 -12.47404 -12.28346 -12.05207 -11.90241 -11.79972 -11.64611 -11.30593 -11.16269 -10.80298 -10.70302 -9.90299 -9.39134 -8.30674 -6.38369 -0.06191 1.23265 1.38417 1.40912 1.49341 1.51463 1.90836 2.03927 2.35680 2.99520 3.30135 3.67615 3.72807 3.92557 4.09042 4.16289 4.20620 4.29644 4.33854 4.42770 4.46410 4.52713 4.54982 4.64043 4.66941 4.73099 4.76755 4.84696 4.92222 4.96805 5.01759 5.12940 5.27279 5.28985 5.30361 5.36724 5.54267 5.55537 5.91493 6.24723 6.54916 6.68611 6.87460 7.29200 8.84644 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.005107 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.595596 B = 5481.096945 C = 6553.950648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C -0.187 4.187 4 C -0.114 4.114 5 C -0.101 4.101 6 C 0.615 3.385 7 O -0.570 6.570 8 N -0.639 5.639 9 C 0.103 3.897 10 C -0.011 4.011 11 C -0.514 4.514 12 H 0.047 0.953 13 C 0.026 3.974 14 N -0.939 5.939 15 Si 0.935 3.065 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.240 1.240 19 C 0.118 3.882 20 O -0.171 6.171 21 C 0.019 3.981 22 C -0.048 4.048 23 C -0.149 4.149 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.163 0.837 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.269 0.731 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 -22.856 2.439 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.188 4.188 4 C -0.134 4.134 5 C -0.153 4.153 6 C 0.406 3.594 7 O -0.453 6.453 8 N -0.370 5.370 9 C -0.020 4.020 10 C -0.030 4.030 11 C -0.552 4.552 12 H 0.065 0.935 13 C -0.173 4.173 14 N -0.578 5.578 15 Si 0.759 3.241 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.163 1.163 19 C -0.003 4.003 20 O -0.067 6.067 21 C -0.034 4.034 22 C -0.085 4.085 23 C -0.206 4.206 24 H 0.097 0.903 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.180 0.820 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.143 0.857 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.475 -22.718 2.048 24.004 hybrid contribution 0.451 0.407 0.083 0.613 sum -7.025 -22.311 2.131 23.488 Atomic orbital electron populations 1.21760 0.94106 1.02706 1.01802 1.20047 0.96295 0.88198 1.04097 1.20489 1.07899 0.99970 0.90463 1.22016 0.98886 0.91191 1.01351 1.21700 1.14364 0.98041 0.81148 1.16407 0.76868 0.80476 0.85606 1.90786 1.58133 1.82778 1.13653 1.49855 1.62655 1.11623 1.12906 1.23783 1.00661 0.94840 0.82687 1.20732 0.94491 0.94609 0.93201 1.20890 1.36302 0.93945 1.04050 0.93510 1.25790 0.95934 0.97354 0.98250 1.70021 1.46137 1.21966 1.19679 0.85923 0.79537 0.80912 0.77744 1.19623 1.20944 1.16332 1.23115 0.97227 0.81087 0.98915 1.84091 1.65457 1.35429 1.21741 1.23500 0.98671 0.82368 0.98812 1.20448 1.00797 1.02629 0.84582 1.21785 0.95819 1.00769 1.02200 0.90347 0.92399 0.93825 0.90251 0.88928 0.81969 0.89666 0.91191 0.91498 0.92174 0.90666 0.89573 0.89543 0.85722 0.91475 0.94140 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.90 71.98 0.71 -1.15 16 2 C -0.05 -0.72 5.97 29.85 0.18 -0.54 16 3 C -0.19 -4.29 5.39 -20.06 -0.11 -4.40 16 4 C -0.11 -3.32 10.57 22.39 0.24 -3.08 16 5 C -0.10 -3.57 7.09 24.07 0.17 -3.40 16 6 C 0.61 25.22 8.04 86.44 0.69 25.91 16 7 O -0.57 -25.70 17.64 -4.32 -0.08 -25.78 16 8 N -0.64 -26.20 3.69 -862.49 -3.18 -29.38 16 9 C 0.10 4.19 6.83 83.27 0.57 4.76 16 10 C -0.01 -0.48 2.98 -11.11 -0.03 -0.51 16 11 C -0.51 -27.26 9.37 25.60 0.24 -27.02 16 12 H 0.05 2.73 8.06 -2.91 -0.02 2.71 16 13 C 0.03 1.41 5.47 84.65 0.46 1.87 16 14 N -0.94 -55.38 13.96 21.45 0.30 -55.08 16 15 Si 0.94 41.04 27.15 68.60 1.86 42.90 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.24 -9.66 5.73 99.48 0.57 -9.09 16 19 C 0.12 4.83 8.18 83.19 0.68 5.51 16 20 O -0.17 -5.59 9.25 -5.07 -0.05 -5.64 16 21 C 0.02 0.46 6.57 24.97 0.16 0.62 16 22 C -0.05 -0.75 6.16 29.85 0.18 -0.57 16 23 C -0.15 -2.10 9.89 71.98 0.71 -1.39 16 24 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.70 7.75 -2.39 -0.02 0.68 16 26 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 0.98 8.01 -2.39 -0.02 0.97 16 29 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.09 3.48 8.10 -2.39 -0.02 3.46 16 31 H 0.07 2.76 6.51 -2.39 -0.02 2.74 16 32 H 0.07 2.92 7.03 -2.39 -0.02 2.90 16 33 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 35 H 0.09 3.46 8.10 -2.39 -0.02 3.44 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.12 1.24 7.47 -2.39 -0.02 1.22 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -66.98 336.55 4.61 -62.37 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.88 Total: 13.97 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 4.86 Total: -3.37 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.88 Total: -84.45 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.12 Total: -31.42 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.86 Total: 42.90 kcal Total: -66.98 4.61 -62.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.919 kcal (2) G-P(sol) polarization free energy of solvation -66.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds