Wall clock time and date at job start Thu Apr 9 2020 15:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35901 * 117.00040 * 2 1 4 4 C 1.38751 * 120.05327 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.93838 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.05659 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.11321 * 359.96029 * 6 5 4 8 8 C 1.50697 * 119.96983 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47171 * 259.99462 * 8 7 6 10 10 C 1.34779 * 120.00201 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99876 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.00080 * 180.02562 * 10 9 8 13 13 H 1.09002 * 109.46518 * 299.99682 * 12 10 9 14 14 C 1.52992 * 109.47195 * 59.99556 * 12 10 9 15 15 C 1.50696 * 109.47092 * 179.97438 * 12 10 9 16 16 H 1.08001 * 120.00204 * 356.65833 * 15 12 10 17 17 C 1.37878 * 120.00026 * 176.65504 * 15 12 10 18 18 N 1.31516 * 119.99766 * 352.45037 * 17 15 12 19 19 Si 1.86800 * 119.99913 * 172.71825 * 17 15 12 20 20 H 1.48506 * 109.46865 * 264.79148 * 19 17 15 21 21 H 1.48494 * 109.47308 * 24.78976 * 19 17 15 22 22 H 1.48502 * 109.47204 * 144.79640 * 19 17 15 23 23 C 1.38167 * 120.05421 * 0.28897 * 7 6 5 24 24 C 1.50703 * 120.02733 * 179.72789 * 23 7 6 25 25 H 1.08998 * 109.47107 * 59.99741 * 1 2 3 26 26 H 1.08998 * 109.47457 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46736 * 300.00243 * 1 2 3 28 28 H 1.07996 * 120.03299 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.96710 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.94700 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47195 * 139.99840 * 8 7 6 32 32 H 1.08997 * 109.47932 * 19.99983 * 8 7 6 33 33 H 0.97002 * 119.99965 * 0.02562 * 9 8 7 34 34 H 1.09005 * 109.47634 * 297.36319 * 14 12 10 35 35 H 1.08997 * 109.47353 * 57.36584 * 14 12 10 36 36 H 1.09008 * 109.47434 * 177.36303 * 14 12 10 37 37 H 0.97000 * 119.99451 * 180.27574 * 18 17 15 38 38 H 1.09003 * 109.46631 * 90.00011 * 24 23 7 39 39 H 1.08997 * 109.47265 * 209.99893 * 24 23 7 40 40 H 1.08998 * 109.46680 * 330.00359 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0005 7 6 4.0560 2.5170 0.0003 8 6 5.5608 2.5981 0.0003 9 7 6.0613 2.3850 -1.3599 10 6 7.3868 2.4131 -1.6024 11 8 8.1652 2.6153 -0.6946 12 6 7.9017 2.1945 -3.0018 13 1 7.5904 1.2110 -3.3539 14 6 7.3335 3.2713 -3.9283 15 6 9.4065 2.2755 -3.0018 16 1 9.9342 2.5195 -2.0916 17 6 10.1097 2.0380 -4.1638 18 7 9.4834 1.5969 -5.2328 19 14 11.9530 2.3355 -4.2173 20 1 12.2198 3.6928 -4.7575 21 1 12.5115 2.2302 -2.8454 22 1 12.5932 1.3201 -5.0917 23 6 3.4311 1.2847 -0.0054 24 6 4.2537 0.0220 -0.0119 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2129 2.3204 0.0005 29 1 1.3341 4.5113 0.0019 30 1 3.7924 4.6379 0.0005 31 1 5.9660 1.8314 0.6607 32 1 5.8718 3.5818 0.3519 33 1 5.4388 2.2237 -2.0861 34 1 6.2476 3.1832 -3.9649 35 1 7.6055 4.2566 -3.5499 36 1 7.7425 3.1413 -4.9303 37 1 9.9788 1.4260 -6.0491 38 1 4.4524 -0.2873 1.0143 39 1 3.7062 -0.7657 -0.5293 40 1 5.1975 0.2060 -0.5252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598503299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:24 Heat of formation + Delta-G solvation = -62.583656 kcal Electronic energy + Delta-G solvation = -21213.755529 eV Core-core repulsion = 17993.423356 eV Total energy + Delta-G solvation = -3220.332173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50219 -38.84058 -37.68644 -34.39445 -33.65004 -32.60118 -30.97125 -30.01936 -27.80811 -27.02709 -25.55954 -25.05436 -22.39260 -21.86826 -20.79122 -19.34977 -17.85916 -16.63402 -16.26706 -15.97830 -15.92291 -15.75539 -15.07457 -14.58678 -14.36824 -13.89768 -13.69568 -13.48406 -13.06051 -12.73320 -12.64672 -12.28650 -12.16885 -12.13870 -11.96288 -11.49591 -11.33931 -11.22557 -10.97617 -10.82776 -10.78823 -10.59779 -10.23447 -9.92160 -8.99344 -8.96293 -8.43882 -8.39627 -8.29001 -8.22471 -6.01394 -4.00945 1.11852 1.32928 3.08187 3.36422 3.42660 3.48677 3.52770 3.78578 4.19512 4.52892 4.60966 4.62917 4.85647 4.88508 4.89718 5.11394 5.17983 5.25719 5.31509 5.34001 5.63780 5.73494 5.77988 5.81678 5.89956 6.21353 6.26941 6.31607 6.35783 6.55686 6.61773 6.65846 6.84401 6.92930 7.10274 7.23650 7.50092 7.72288 8.01787 8.15898 8.50058 9.08280 9.28792 9.63536 11.08695 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.003581 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.273432 B = 7817.904207 C = 8013.752883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.120 3.880 4 C -0.203 4.203 5 C -0.090 4.090 6 C -0.134 4.134 7 C -0.064 4.064 8 C 0.160 3.840 9 N -0.741 5.741 10 C 0.520 3.480 11 O -0.546 6.546 12 C 0.028 3.972 13 H 0.057 0.943 14 C -0.127 4.127 15 C -0.501 4.501 16 H 0.074 0.926 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.272 1.272 22 H -0.288 1.288 23 C -0.096 4.096 24 C -0.114 4.114 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.397 0.603 34 H 0.016 0.984 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.260 0.740 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.282 -0.112 8.848 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.076 3.924 4 C -0.222 4.222 5 C -0.108 4.108 6 C -0.153 4.153 7 C -0.064 4.064 8 C 0.036 3.964 9 N -0.396 5.396 10 C 0.310 3.690 11 O -0.422 6.422 12 C 0.007 3.993 13 H 0.075 0.925 14 C -0.185 4.185 15 C -0.540 4.540 16 H 0.092 0.908 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.197 1.197 22 H -0.214 1.214 23 C -0.097 4.097 24 C -0.170 4.170 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.554 -0.219 9.338 21.670 hybrid contribution 0.154 0.302 -0.464 0.575 sum -19.400 0.083 8.873 21.333 Atomic orbital electron populations 1.23034 0.78683 1.03818 1.01191 1.86079 1.21027 1.26812 1.88781 1.18794 0.91708 0.84194 0.97753 1.21202 0.99795 0.92419 1.08794 1.20876 0.94494 0.96916 0.98525 1.21028 0.93652 0.98103 1.02496 1.19732 0.95552 0.91953 0.99170 1.20043 0.87639 1.02171 0.86516 1.46359 1.08353 1.76137 1.08753 1.21989 0.80075 0.73626 0.93355 1.90533 1.55960 1.48308 1.47352 1.18874 0.97317 0.97306 0.85770 0.92526 1.21672 0.95949 0.97953 1.02952 1.21144 0.89611 1.46881 0.96331 0.90752 1.24949 0.98649 0.94889 0.95680 1.69951 1.36029 1.45112 1.02385 0.86487 0.85181 0.77810 0.78055 1.20749 1.19670 1.21363 1.19178 0.90470 0.95928 1.04092 1.20731 0.99708 0.94101 1.02487 0.92734 0.88335 0.92826 0.85653 0.85796 0.85576 0.90958 0.91194 0.76913 0.96543 0.94903 0.90166 0.93027 0.91340 0.91153 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.50 9.55 -19.43 -0.19 -3.69 16 3 C 0.12 1.45 6.66 -39.22 -0.26 1.19 16 4 C -0.20 -2.09 9.04 -39.43 -0.36 -2.45 16 5 C -0.09 -0.92 10.04 -39.61 -0.40 -1.32 16 6 C -0.13 -1.57 9.66 -39.56 -0.38 -1.95 16 7 C -0.06 -0.84 5.25 -104.65 -0.55 -1.39 16 8 C 0.16 2.46 4.93 -5.20 -0.03 2.43 16 9 N -0.74 -13.13 4.77 -61.47 -0.29 -13.42 16 10 C 0.52 11.91 7.15 -10.98 -0.08 11.83 16 11 O -0.55 -14.31 15.46 5.56 0.09 -14.22 16 12 C 0.03 0.71 2.53 -92.93 -0.23 0.48 16 13 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 14 C -0.13 -2.92 8.91 37.15 0.33 -2.58 16 15 C -0.50 -14.37 8.32 -34.44 -0.29 -14.65 16 16 H 0.07 2.25 6.77 -52.49 -0.36 1.90 16 17 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 18 N -0.90 -25.51 11.92 55.43 0.66 -24.85 16 19 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C -0.10 -1.25 5.89 -104.47 -0.62 -1.87 16 24 C -0.11 -1.47 9.04 36.01 0.33 -1.14 16 25 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.13 1.33 8.03 -52.49 -0.42 0.91 16 31 H 0.07 1.15 7.30 -51.93 -0.38 0.77 16 32 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 33 H 0.40 6.41 7.93 -40.82 -0.32 6.08 16 34 H 0.02 0.31 7.64 -51.93 -0.40 -0.09 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 2.02 6.59 -51.92 -0.34 1.68 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.87 7.54 -51.93 -0.39 0.48 16 40 H 0.08 1.10 6.33 -51.93 -0.33 0.77 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -32.22 331.67 -7.12 -39.34 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.73 Total: 3.52 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.63 Total: -8.66 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.37 Total: -38.28 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.10 Total: -17.91 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.22 -7.12 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598503299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.246 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds