Wall clock time and date at job start Thu Apr 9 2020 15:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35901 * 117.00040 * 2 1 4 4 C 1.38751 * 120.05327 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.93838 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.05659 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.11321 * 359.96029 * 6 5 4 8 8 C 1.50697 * 119.96983 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47171 * 259.99462 * 8 7 6 10 10 C 1.34779 * 120.00201 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99876 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.00080 * 180.02562 * 10 9 8 13 13 H 1.09002 * 109.46518 * 299.99682 * 12 10 9 14 14 C 1.52992 * 109.47195 * 59.99556 * 12 10 9 15 15 C 1.50696 * 109.47092 * 179.97438 * 12 10 9 16 16 H 1.08001 * 120.00204 * 356.65833 * 15 12 10 17 17 C 1.37878 * 120.00026 * 176.65504 * 15 12 10 18 18 N 1.31516 * 119.99766 * 352.45037 * 17 15 12 19 19 Si 1.86800 * 119.99913 * 172.71825 * 17 15 12 20 20 H 1.48506 * 109.46865 * 264.79148 * 19 17 15 21 21 H 1.48494 * 109.47308 * 24.78976 * 19 17 15 22 22 H 1.48502 * 109.47204 * 144.79640 * 19 17 15 23 23 C 1.38167 * 120.05421 * 0.28897 * 7 6 5 24 24 C 1.50703 * 120.02733 * 179.72789 * 23 7 6 25 25 H 1.08998 * 109.47107 * 59.99741 * 1 2 3 26 26 H 1.08998 * 109.47457 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46736 * 300.00243 * 1 2 3 28 28 H 1.07996 * 120.03299 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.96710 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.94700 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47195 * 139.99840 * 8 7 6 32 32 H 1.08997 * 109.47932 * 19.99983 * 8 7 6 33 33 H 0.97002 * 119.99965 * 0.02562 * 9 8 7 34 34 H 1.09005 * 109.47634 * 297.36319 * 14 12 10 35 35 H 1.08997 * 109.47353 * 57.36584 * 14 12 10 36 36 H 1.09008 * 109.47434 * 177.36303 * 14 12 10 37 37 H 0.97000 * 119.99451 * 180.27574 * 18 17 15 38 38 H 1.09003 * 109.46631 * 90.00011 * 24 23 7 39 39 H 1.08997 * 109.47265 * 209.99893 * 24 23 7 40 40 H 1.08998 * 109.46680 * 330.00359 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0005 7 6 4.0560 2.5170 0.0003 8 6 5.5608 2.5981 0.0003 9 7 6.0613 2.3850 -1.3599 10 6 7.3868 2.4131 -1.6024 11 8 8.1652 2.6153 -0.6946 12 6 7.9017 2.1945 -3.0018 13 1 7.5904 1.2110 -3.3539 14 6 7.3335 3.2713 -3.9283 15 6 9.4065 2.2755 -3.0018 16 1 9.9342 2.5195 -2.0916 17 6 10.1097 2.0380 -4.1638 18 7 9.4834 1.5969 -5.2328 19 14 11.9530 2.3355 -4.2173 20 1 12.2198 3.6928 -4.7575 21 1 12.5115 2.2302 -2.8454 22 1 12.5932 1.3201 -5.0917 23 6 3.4311 1.2847 -0.0054 24 6 4.2537 0.0220 -0.0119 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2129 2.3204 0.0005 29 1 1.3341 4.5113 0.0019 30 1 3.7924 4.6379 0.0005 31 1 5.9660 1.8314 0.6607 32 1 5.8718 3.5818 0.3519 33 1 5.4388 2.2237 -2.0861 34 1 6.2476 3.1832 -3.9649 35 1 7.6055 4.2566 -3.5499 36 1 7.7425 3.1413 -4.9303 37 1 9.9788 1.4260 -6.0491 38 1 4.4524 -0.2873 1.0143 39 1 3.7062 -0.7657 -0.5293 40 1 5.1975 0.2060 -0.5252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598503299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:24 Heat of formation + Delta-G solvation = -82.814652 kcal Electronic energy + Delta-G solvation = -21214.632810 eV Core-core repulsion = 17993.423356 eV Total energy + Delta-G solvation = -3221.209454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.41072 -40.45736 -38.67646 -35.82398 -35.65136 -33.69819 -32.66598 -31.36409 -28.46839 -28.02890 -27.17544 -26.67993 -24.18805 -22.75190 -21.78015 -21.10042 -18.81144 -18.30530 -17.66478 -17.47839 -16.90694 -16.61396 -16.58905 -16.21626 -15.94179 -15.13425 -14.75667 -14.61687 -14.42171 -14.30147 -13.86886 -13.74560 -13.36414 -13.20430 -13.00856 -12.93283 -12.76691 -12.75564 -12.56261 -12.24058 -12.21245 -11.99941 -11.96275 -11.67744 -11.05440 -10.57605 -10.40285 -9.98153 -9.69273 -9.08458 -8.16952 -6.23582 0.20609 0.46036 1.41131 1.42051 1.54476 1.94298 2.33750 2.39090 2.50718 2.91417 3.15082 3.65072 3.82349 4.04874 4.15202 4.20702 4.33541 4.35967 4.43097 4.49708 4.70492 4.73515 4.73825 4.75682 4.76333 4.78124 4.89407 4.94490 5.00847 5.27745 5.37682 5.46866 5.50113 5.54444 5.62415 5.74084 5.80369 5.88083 6.19158 6.46845 6.73798 6.87766 7.40699 7.54429 8.92011 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.003581 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.273432 B = 7817.904207 C = 8013.752883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.112 3.888 4 C -0.197 4.197 5 C -0.085 4.085 6 C -0.140 4.140 7 C -0.075 4.075 8 C 0.164 3.836 9 N -0.719 5.719 10 C 0.523 3.477 11 O -0.585 6.585 12 C 0.023 3.977 13 H 0.042 0.958 14 C -0.114 4.114 15 C -0.529 4.529 16 H 0.049 0.951 17 C 0.021 3.979 18 N -0.912 5.912 19 Si 0.954 3.046 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.276 1.276 23 C -0.115 4.115 24 C -0.108 4.108 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.067 0.933 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.135 0.865 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.407 0.593 34 H 0.052 0.948 35 H 0.029 0.971 36 H 0.057 0.943 37 H 0.265 0.735 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.572 0.623 8.850 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.067 3.933 4 C -0.216 4.216 5 C -0.102 4.102 6 C -0.159 4.159 7 C -0.075 4.075 8 C 0.041 3.959 9 N -0.372 5.372 10 C 0.312 3.688 11 O -0.465 6.465 12 C 0.002 3.998 13 H 0.060 0.940 14 C -0.172 4.172 15 C -0.568 4.568 16 H 0.068 0.932 17 C -0.179 4.179 18 N -0.551 5.551 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.202 1.202 23 C -0.116 4.116 24 C -0.165 4.165 25 H 0.083 0.917 26 H 0.133 0.867 27 H 0.085 0.915 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.153 0.847 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.243 0.757 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.907 0.509 9.326 23.815 hybrid contribution 0.709 0.021 -0.435 0.832 sum -21.198 0.530 8.891 22.993 Atomic orbital electron populations 1.23341 0.76487 1.05454 1.02319 1.86056 1.23343 1.26639 1.88660 1.18911 0.91449 0.85255 0.97689 1.21564 1.01254 0.91700 1.07037 1.21235 0.93955 0.98165 0.96880 1.21210 0.94565 0.97806 1.02319 1.19483 0.93822 0.92886 1.01332 1.20067 0.89606 1.01710 0.84494 1.46060 1.06674 1.74019 1.10416 1.21529 0.81495 0.73679 0.92057 1.90509 1.57412 1.50569 1.48014 1.18806 0.95967 0.97218 0.87784 0.94042 1.21489 0.98032 0.96871 1.00803 1.21285 0.91727 1.47964 0.95779 0.93247 1.25598 1.02585 0.94422 0.95265 1.70019 1.37442 1.45018 1.02670 0.85610 0.80442 0.78303 0.77715 1.19701 1.20377 1.20172 1.19225 0.91449 0.95583 1.05358 1.20637 0.98813 0.94619 1.02423 0.91671 0.86679 0.91470 0.82782 0.82717 0.84673 0.91893 0.91239 0.75733 0.92880 0.95141 0.92424 0.92621 0.91052 0.91025 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.83 9.55 -92.43 -0.88 -7.71 16 3 C 0.11 2.48 6.66 22.50 0.15 2.63 16 4 C -0.20 -3.39 9.04 22.37 0.20 -3.18 16 5 C -0.08 -1.43 10.04 22.25 0.22 -1.20 16 6 C -0.14 -2.97 9.66 22.28 0.22 -2.75 16 7 C -0.07 -1.90 5.25 -19.88 -0.10 -2.01 16 8 C 0.16 5.07 4.93 85.63 0.42 5.49 16 9 N -0.72 -25.55 4.77 -466.79 -2.23 -27.77 16 10 C 0.52 24.51 7.15 87.66 0.63 25.14 16 11 O -0.59 -31.72 15.46 -3.04 -0.05 -31.77 16 12 C 0.02 1.20 2.53 -12.29 -0.03 1.17 16 13 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.11 -5.20 8.91 71.98 0.64 -4.56 16 15 C -0.53 -31.16 8.32 25.60 0.21 -30.95 16 16 H 0.05 3.11 6.77 -2.91 -0.02 3.09 16 17 C 0.02 1.17 5.20 84.65 0.44 1.61 16 18 N -0.91 -52.23 11.92 21.45 0.26 -51.98 16 19 Si 0.95 45.49 29.54 68.60 2.03 47.52 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 C -0.11 -2.93 5.89 -19.77 -0.12 -3.04 16 24 C -0.11 -2.83 9.04 71.24 0.64 -2.19 16 25 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 26 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.55 7.66 -2.39 -0.02 0.54 16 28 H 0.15 1.71 6.30 -2.91 -0.02 1.69 16 29 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.14 2.56 8.03 -2.91 -0.02 2.53 16 31 H 0.06 2.07 7.30 -2.39 -0.02 2.05 16 32 H 0.07 2.17 8.00 -2.39 -0.02 2.15 16 33 H 0.41 12.89 7.93 -92.71 -0.73 12.16 16 34 H 0.05 1.98 7.64 -2.38 -0.02 1.96 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 2.90 6.59 -2.38 -0.02 2.88 16 37 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.80 7.54 -2.39 -0.02 1.78 16 40 H 0.06 1.70 6.33 -2.39 -0.02 1.68 16 Total: -1.00 -70.42 331.67 4.08 -66.34 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.31 Total: 17.89 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 4.64 Total: -12.53 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -1.97 Total: -79.75 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -0.93 Total: -39.48 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -70.42 4.08 -66.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598503299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.471 kcal (2) G-P(sol) polarization free energy of solvation -70.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds