Wall clock time and date at job start Thu Apr 9 2020 15:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00213 * 2 1 4 4 C 1.38752 * 120.05604 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94217 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05877 * 0.03188 * 5 4 3 7 7 C 1.38249 * 120.11125 * 359.95004 * 6 5 4 8 8 C 1.50703 * 119.97189 * 180.02562 * 7 6 5 9 9 N 1.46505 * 109.47064 * 259.99828 * 8 7 6 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00597 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99622 * 179.97438 * 10 9 8 13 13 H 1.09002 * 109.47060 * 60.00278 * 12 10 9 14 14 C 1.53002 * 109.47419 * 300.00197 * 12 10 9 15 15 C 1.50703 * 109.47064 * 180.02562 * 12 10 9 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 12 10 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 12 10 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47061 * 60.00295 * 19 17 15 21 21 H 1.48505 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00069 * 19 17 15 23 23 C 1.38164 * 120.05550 * 0.29689 * 7 6 5 24 24 C 1.50701 * 120.02726 * 179.72746 * 23 7 6 25 25 H 1.08997 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47059 * 300.00555 * 1 2 3 27 27 H 1.09004 * 109.46588 * 60.00383 * 1 2 3 28 28 H 1.07996 * 120.02717 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.96977 * 180.02562 * 5 4 3 30 30 H 1.08004 * 119.94570 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47152 * 139.99911 * 8 7 6 32 32 H 1.09001 * 109.46980 * 20.00012 * 8 7 6 33 33 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 34 34 H 1.08992 * 109.47063 * 300.00072 * 14 12 10 35 35 H 1.09004 * 109.46733 * 60.00358 * 14 12 10 36 36 H 1.08996 * 109.47407 * 179.97438 * 14 12 10 37 37 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.47203 * 90.00270 * 24 23 7 39 39 H 1.08998 * 109.46751 * 210.00214 * 24 23 7 40 40 H 1.09002 * 109.47143 * 329.99697 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6757 0.0004 7 6 4.0561 2.5169 0.0013 8 6 5.5609 2.5980 0.0023 9 7 6.0624 2.3842 -1.3575 10 6 7.3879 2.4132 -1.5991 11 8 8.1657 2.6157 -0.6909 12 6 7.9038 2.1928 -2.9978 13 1 7.4987 2.9585 -3.6594 14 6 7.4684 0.8111 -3.4903 15 6 9.4087 2.2739 -2.9968 16 1 9.9385 2.4655 -2.0755 17 6 10.1090 2.1036 -4.1723 18 7 9.4638 1.8708 -5.2943 19 14 11.9743 2.2049 -4.1711 20 1 12.5261 1.1612 -3.2702 21 1 12.4826 1.9875 -5.5494 22 1 12.3969 3.5456 -3.6928 23 6 3.4312 1.2847 -0.0044 24 6 4.2538 0.0220 -0.0096 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.2129 2.3204 -0.0005 29 1 1.3342 4.5114 0.0000 30 1 3.7924 4.6380 0.0004 31 1 5.9656 1.8316 0.6635 32 1 5.8715 3.5819 0.3537 33 1 5.4403 2.2226 -2.0839 34 1 7.8735 0.0454 -2.8288 35 1 6.3800 0.7521 -3.4910 36 1 7.8411 0.6519 -4.5021 37 1 9.9565 1.7506 -6.1212 38 1 4.4516 -0.2870 1.0168 39 1 3.7066 -0.7659 -0.5272 40 1 5.1980 0.2056 -0.5223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598503300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:27 Heat of formation + Delta-G solvation = -61.477203 kcal Electronic energy + Delta-G solvation = -21258.076709 eV Core-core repulsion = 18037.792516 eV Total energy + Delta-G solvation = -3220.284193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50104 -38.83950 -37.68470 -34.39255 -33.67419 -32.59732 -30.95238 -29.97175 -27.80702 -27.01730 -25.55565 -25.07062 -22.34493 -21.86822 -20.79150 -19.34073 -17.86072 -16.63584 -16.26351 -15.97957 -15.90003 -15.75561 -15.07354 -14.61610 -14.38911 -13.80514 -13.75999 -13.48392 -13.01348 -12.80972 -12.62776 -12.30337 -12.16643 -12.09304 -11.95116 -11.41689 -11.33534 -11.22525 -10.95995 -10.84145 -10.67332 -10.64381 -10.20213 -9.92211 -9.00182 -8.93072 -8.49610 -8.38876 -8.26149 -8.21807 -5.98714 -4.01767 1.12035 1.33036 3.08305 3.39433 3.41560 3.46587 3.52270 3.78853 4.19783 4.52542 4.61076 4.63049 4.85719 4.88580 4.89826 5.11582 5.18054 5.25784 5.31624 5.34665 5.64018 5.73775 5.78396 5.81776 5.90250 6.21672 6.27698 6.32257 6.37021 6.55790 6.66026 6.68050 6.88588 6.98007 7.11005 7.23810 7.53078 7.80829 8.03778 8.20255 8.50282 9.06985 9.29102 9.63585 11.08855 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.003626 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.731284 B = 7720.306490 C = 8038.588884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.120 3.880 4 C -0.203 4.203 5 C -0.090 4.090 6 C -0.134 4.134 7 C -0.064 4.064 8 C 0.160 3.840 9 N -0.741 5.741 10 C 0.520 3.480 11 O -0.546 6.546 12 C 0.030 3.970 13 H 0.052 0.948 14 C -0.132 4.132 15 C -0.501 4.501 16 H 0.074 0.926 17 C 0.058 3.942 18 N -0.897 5.897 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.095 4.095 24 C -0.114 4.114 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.397 0.603 34 H 0.031 0.969 35 H 0.012 0.988 36 H 0.092 0.908 37 H 0.261 0.739 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.144 -1.188 8.970 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.075 3.925 4 C -0.222 4.222 5 C -0.108 4.108 6 C -0.153 4.153 7 C -0.064 4.064 8 C 0.036 3.964 9 N -0.396 5.396 10 C 0.309 3.691 11 O -0.422 6.422 12 C 0.009 3.991 13 H 0.070 0.930 14 C -0.190 4.190 15 C -0.539 4.539 16 H 0.092 0.908 17 C -0.142 4.142 18 N -0.537 5.537 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.096 4.096 24 C -0.170 4.170 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.050 0.950 35 H 0.031 0.969 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.417 -1.269 9.447 21.630 hybrid contribution 0.160 0.197 -0.387 0.462 sum -19.257 -1.072 9.060 21.309 Atomic orbital electron populations 1.23034 0.78687 1.03814 1.01190 1.86076 1.21025 1.26816 1.88780 1.18797 0.91708 0.84193 0.97756 1.21200 0.99795 0.92420 1.08796 1.20876 0.94493 0.96918 0.98529 1.21031 0.93655 0.98103 1.02507 1.19734 0.95552 0.91958 0.99179 1.20046 0.87633 1.02159 0.86535 1.46352 1.08355 1.76093 1.08785 1.21999 0.80080 0.73531 0.93445 1.90530 1.56010 1.48373 1.47309 1.18868 0.97517 0.95986 0.86759 0.93029 1.21736 0.95724 0.97000 1.04518 1.21119 0.89738 1.47983 0.95077 0.90832 1.24948 0.98772 0.95151 0.95373 1.69864 1.35407 1.49566 0.98833 0.86514 0.85198 0.78776 0.76679 1.20208 1.21424 1.20215 1.19178 0.90462 0.95927 1.04065 1.20731 0.99740 0.94098 1.02464 0.88339 0.92833 0.92726 0.85653 0.85789 0.85565 0.90975 0.91182 0.76902 0.94990 0.96907 0.88910 0.92954 0.91365 0.91169 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.51 9.55 -19.42 -0.19 -3.70 16 3 C 0.12 1.45 6.66 -39.21 -0.26 1.19 16 4 C -0.20 -2.10 9.04 -39.43 -0.36 -2.45 16 5 C -0.09 -0.92 10.04 -39.61 -0.40 -1.32 16 6 C -0.13 -1.57 9.66 -39.56 -0.38 -1.95 16 7 C -0.06 -0.84 5.25 -104.64 -0.55 -1.39 16 8 C 0.16 2.47 4.93 -5.19 -0.03 2.44 16 9 N -0.74 -13.19 4.76 -61.47 -0.29 -13.48 16 10 C 0.52 11.95 7.15 -10.99 -0.08 11.87 16 11 O -0.55 -14.35 15.46 5.56 0.09 -14.26 16 12 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 13 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 14 C -0.13 -3.06 8.86 37.16 0.33 -2.73 16 15 C -0.50 -14.37 8.37 -34.44 -0.29 -14.66 16 16 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.90 -25.43 11.32 55.43 0.63 -24.81 16 19 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 C -0.10 -1.25 5.89 -104.47 -0.62 -1.87 16 24 C -0.11 -1.48 9.04 36.01 0.33 -1.15 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 29 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.13 1.34 8.03 -52.48 -0.42 0.91 16 31 H 0.07 1.15 7.30 -51.93 -0.38 0.77 16 32 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 33 H 0.40 6.45 7.88 -40.82 -0.32 6.12 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 36 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.88 7.54 -51.93 -0.39 0.49 16 40 H 0.08 1.12 6.33 -51.93 -0.33 0.79 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -32.08 330.63 -7.15 -39.22 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.70 Total: 3.81 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.65 Total: -8.80 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.34 Total: -38.29 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.10 Total: -17.96 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.08 -7.15 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598503300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.253 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds