Wall clock time and date at job start Thu Apr 9 2020 15:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00213 * 2 1 4 4 C 1.38752 * 120.05604 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94217 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05877 * 0.03188 * 5 4 3 7 7 C 1.38249 * 120.11125 * 359.95004 * 6 5 4 8 8 C 1.50703 * 119.97189 * 180.02562 * 7 6 5 9 9 N 1.46505 * 109.47064 * 259.99828 * 8 7 6 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00597 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99622 * 179.97438 * 10 9 8 13 13 H 1.09002 * 109.47060 * 60.00278 * 12 10 9 14 14 C 1.53002 * 109.47419 * 300.00197 * 12 10 9 15 15 C 1.50703 * 109.47064 * 180.02562 * 12 10 9 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 12 10 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 12 10 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47061 * 60.00295 * 19 17 15 21 21 H 1.48505 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00069 * 19 17 15 23 23 C 1.38164 * 120.05550 * 0.29689 * 7 6 5 24 24 C 1.50701 * 120.02726 * 179.72746 * 23 7 6 25 25 H 1.08997 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47059 * 300.00555 * 1 2 3 27 27 H 1.09004 * 109.46588 * 60.00383 * 1 2 3 28 28 H 1.07996 * 120.02717 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.96977 * 180.02562 * 5 4 3 30 30 H 1.08004 * 119.94570 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47152 * 139.99911 * 8 7 6 32 32 H 1.09001 * 109.46980 * 20.00012 * 8 7 6 33 33 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 34 34 H 1.08992 * 109.47063 * 300.00072 * 14 12 10 35 35 H 1.09004 * 109.46733 * 60.00358 * 14 12 10 36 36 H 1.08996 * 109.47407 * 179.97438 * 14 12 10 37 37 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.47203 * 90.00270 * 24 23 7 39 39 H 1.08998 * 109.46751 * 210.00214 * 24 23 7 40 40 H 1.09002 * 109.47143 * 329.99697 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6757 0.0004 7 6 4.0561 2.5169 0.0013 8 6 5.5609 2.5980 0.0023 9 7 6.0624 2.3842 -1.3575 10 6 7.3879 2.4132 -1.5991 11 8 8.1657 2.6157 -0.6909 12 6 7.9038 2.1928 -2.9978 13 1 7.4987 2.9585 -3.6594 14 6 7.4684 0.8111 -3.4903 15 6 9.4087 2.2739 -2.9968 16 1 9.9385 2.4655 -2.0755 17 6 10.1090 2.1036 -4.1723 18 7 9.4638 1.8708 -5.2943 19 14 11.9743 2.2049 -4.1711 20 1 12.5261 1.1612 -3.2702 21 1 12.4826 1.9875 -5.5494 22 1 12.3969 3.5456 -3.6928 23 6 3.4312 1.2847 -0.0044 24 6 4.2538 0.0220 -0.0096 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.2129 2.3204 -0.0005 29 1 1.3342 4.5114 0.0000 30 1 3.7924 4.6380 0.0004 31 1 5.9656 1.8316 0.6635 32 1 5.8715 3.5819 0.3537 33 1 5.4403 2.2226 -2.0839 34 1 7.8735 0.0454 -2.8288 35 1 6.3800 0.7521 -3.4910 36 1 7.8411 0.6519 -4.5021 37 1 9.9565 1.7506 -6.1212 38 1 4.4516 -0.2870 1.0168 39 1 3.7066 -0.7659 -0.5272 40 1 5.1980 0.2056 -0.5223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598503300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:27 Heat of formation + Delta-G solvation = -81.512275 kcal Electronic energy + Delta-G solvation = -21258.945495 eV Core-core repulsion = 18037.792516 eV Total energy + Delta-G solvation = -3221.152979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41191 -40.45950 -38.67657 -35.84050 -35.66691 -33.68960 -32.62996 -31.34552 -28.46565 -28.02382 -27.19296 -26.68659 -24.15057 -22.75349 -21.78218 -21.09873 -18.81599 -18.30566 -17.61334 -17.51548 -16.90763 -16.61633 -16.58928 -16.24342 -15.96333 -15.02008 -14.85575 -14.66225 -14.37952 -14.29497 -13.93525 -13.62791 -13.33351 -13.19714 -13.00765 -12.94815 -12.78621 -12.66920 -12.57994 -12.24715 -12.17740 -11.99784 -11.96014 -11.67690 -11.03796 -10.62978 -10.37261 -9.98565 -9.69394 -9.08466 -8.13507 -6.24129 0.20500 0.45844 1.42208 1.43979 1.52477 1.94067 2.33539 2.39088 2.50718 2.91335 3.15934 3.64886 3.82399 4.04730 4.15317 4.20575 4.34042 4.36522 4.43188 4.49664 4.70665 4.74213 4.74986 4.76219 4.76692 4.78672 4.89583 4.96337 5.03524 5.28446 5.37617 5.46934 5.50857 5.54127 5.62372 5.75780 5.80140 5.95189 6.22347 6.46852 6.73358 6.86918 7.40905 7.54239 8.92186 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.003626 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.731284 B = 7720.306490 C = 8038.588884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.112 3.888 4 C -0.197 4.197 5 C -0.085 4.085 6 C -0.141 4.141 7 C -0.075 4.075 8 C 0.164 3.836 9 N -0.719 5.719 10 C 0.523 3.477 11 O -0.586 6.586 12 C 0.025 3.975 13 H 0.041 0.959 14 C -0.118 4.118 15 C -0.530 4.530 16 H 0.049 0.951 17 C 0.019 3.981 18 N -0.911 5.911 19 Si 0.956 3.044 20 H -0.276 1.276 21 H -0.275 1.275 22 H -0.276 1.276 23 C -0.114 4.114 24 C -0.108 4.108 25 H 0.115 0.885 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.135 0.865 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.407 0.593 34 H 0.023 0.977 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.265 0.735 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.383 -0.926 9.061 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.067 3.933 4 C -0.216 4.216 5 C -0.103 4.103 6 C -0.160 4.160 7 C -0.076 4.076 8 C 0.041 3.959 9 N -0.372 5.372 10 C 0.312 3.688 11 O -0.465 6.465 12 C 0.003 3.997 13 H 0.058 0.942 14 C -0.176 4.176 15 C -0.569 4.569 16 H 0.068 0.932 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.782 3.218 20 H -0.202 1.202 21 H -0.199 1.199 22 H -0.201 1.201 23 C -0.115 4.115 24 C -0.165 4.165 25 H 0.133 0.867 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.153 0.847 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.719 -1.015 9.526 23.738 hybrid contribution 0.694 0.102 -0.396 0.806 sum -21.025 -0.912 9.130 22.940 Atomic orbital electron populations 1.23342 0.76494 1.05461 1.02309 1.86053 1.23333 1.26612 1.88651 1.18912 0.91455 0.85247 0.97670 1.21562 1.01259 0.91701 1.07038 1.21231 0.93943 0.98183 0.96914 1.21213 0.94590 0.97813 1.02379 1.19486 0.93819 0.92904 1.01351 1.20070 0.89605 1.01691 0.84514 1.46056 1.06675 1.73993 1.10445 1.21537 0.81502 0.73590 0.92156 1.90506 1.57454 1.50571 1.47991 1.18805 0.96068 0.96614 0.88173 0.94152 1.21541 0.97880 0.95531 1.02645 1.21276 0.91811 1.49250 0.94538 0.93225 1.25605 1.02789 0.94589 0.94981 1.69945 1.36775 1.49251 0.99094 0.85646 0.80387 0.78594 0.77213 1.20153 1.19943 1.20128 1.19226 0.91437 0.95584 1.05279 1.20639 0.98857 0.94568 1.02423 0.86659 0.91491 0.91675 0.82779 0.82747 0.84741 0.91813 0.91315 0.75737 0.95764 0.93335 0.91080 0.92598 0.91082 0.90988 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.78 9.55 -92.39 -0.88 -7.66 16 3 C 0.11 2.48 6.66 22.51 0.15 2.63 16 4 C -0.20 -3.40 9.04 22.37 0.20 -3.20 16 5 C -0.08 -1.45 10.04 22.25 0.22 -1.23 16 6 C -0.14 -3.02 9.66 22.28 0.22 -2.81 16 7 C -0.08 -1.92 5.25 -19.88 -0.10 -2.02 16 8 C 0.16 5.09 4.93 85.63 0.42 5.51 16 9 N -0.72 -25.66 4.76 -466.78 -2.22 -27.88 16 10 C 0.52 24.57 7.15 87.66 0.63 25.20 16 11 O -0.59 -31.76 15.46 -3.03 -0.05 -31.80 16 12 C 0.02 1.26 2.64 -12.28 -0.03 1.23 16 13 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 14 C -0.12 -5.51 8.86 71.98 0.64 -4.87 16 15 C -0.53 -31.25 8.37 25.60 0.21 -31.04 16 16 H 0.05 3.11 6.75 -2.91 -0.02 3.09 16 17 C 0.02 1.10 5.30 84.66 0.45 1.55 16 18 N -0.91 -51.84 11.32 21.45 0.24 -51.60 16 19 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 C -0.11 -2.90 5.89 -19.77 -0.12 -3.01 16 24 C -0.11 -2.80 9.04 71.24 0.64 -2.16 16 25 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 27 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 28 H 0.15 1.72 6.30 -2.91 -0.02 1.70 16 29 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 30 H 0.13 2.59 8.03 -2.91 -0.02 2.57 16 31 H 0.06 2.09 7.30 -2.39 -0.02 2.07 16 32 H 0.07 2.16 8.00 -2.39 -0.02 2.14 16 33 H 0.41 12.97 7.88 -92.71 -0.73 12.24 16 34 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.86 7.57 -2.39 -0.02 1.84 16 36 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 37 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 1.78 7.54 -2.39 -0.02 1.77 16 40 H 0.06 1.71 6.33 -2.39 -0.02 1.70 16 Total: -1.00 -69.94 330.63 4.08 -65.86 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.32 Total: 18.49 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 4.64 Total: -12.90 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -1.98 Total: -79.48 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.93 Total: -39.47 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -69.94 4.08 -65.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598503300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.656 kcal (2) G-P(sol) polarization free energy of solvation -69.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds