Wall clock time and date at job start Thu Apr 9 2020 15:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48503 * 109.46926 * 240.00099 * 3 2 1 5 5 H 1.48506 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47227 * 119.99890 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00218 * 0.02562 * 12 11 10 14 14 N 1.34784 * 120.00109 * 179.97438 * 12 11 10 15 15 C 1.47069 * 136.05284 * 359.63697 * 14 12 11 16 16 C 1.53245 * 88.07974 * 207.19654 * 15 14 12 17 17 C 1.53001 * 114.32426 * 220.47260 * 16 15 14 18 18 C 1.50700 * 109.46793 * 268.75632 * 17 16 15 19 19 C 1.34513 * 125.78670 * 90.00292 * 18 17 16 20 20 C 1.41386 * 106.84106 * 180.02562 * 19 18 17 21 21 C 1.34512 * 106.83855 * 0.02562 * 20 19 18 22 22 O 1.34299 * 108.42062 * 359.73630 * 21 20 19 23 23 C 1.47059 * 136.05949 * 179.97438 * 14 12 11 24 24 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 26 26 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 27 27 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 28 28 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 29 29 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 30 30 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 31 31 H 1.08994 * 113.47121 * 321.93204 * 15 14 12 32 32 H 1.08999 * 113.46509 * 92.37398 * 15 14 12 33 33 H 1.08996 * 114.01273 * 87.71438 * 16 15 14 34 34 H 1.08996 * 109.47288 * 28.76107 * 17 16 15 35 35 H 1.09002 * 109.46799 * 148.76332 * 17 16 15 36 36 H 1.08003 * 126.58418 * 0.03710 * 19 18 17 37 37 H 1.08001 * 126.57984 * 179.97438 * 20 19 18 38 38 H 1.08000 * 125.78691 * 180.02562 * 21 20 19 39 39 H 1.09001 * 113.47041 * 267.63397 * 23 14 12 40 40 H 1.09001 * 113.46542 * 38.07083 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0005 13 8 3.6520 -5.9109 0.0001 14 7 2.0103 -7.4033 0.0015 15 6 0.6951 -8.0614 0.0096 16 6 1.3556 -9.2579 0.7029 17 6 0.8729 -10.6210 0.2031 18 6 -0.2925 -11.0795 1.0414 19 6 -1.5894 -10.8234 0.7926 20 6 -2.3338 -11.4381 1.8256 21 6 -1.4472 -12.0326 2.6440 22 8 -0.2127 -11.8167 2.1611 23 6 2.6195 -8.7418 0.0008 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6044 -0.8895 28 1 2.8719 -3.6043 0.8905 29 1 0.8539 -5.0446 0.8914 30 1 0.8533 -5.0451 -0.8886 31 1 -0.0409 -7.5528 0.6321 32 1 0.3185 -8.2909 -0.9872 33 1 1.3844 -9.1803 1.7897 34 1 0.5609 -10.5367 -0.8379 35 1 1.6841 -11.3449 0.2818 36 1 -1.9860 -10.2571 -0.0371 37 1 -3.4080 -11.4310 1.9366 38 1 -1.6876 -12.5928 3.5355 39 1 2.7602 -9.1542 -0.9983 40 1 3.5166 -8.8106 0.6161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600370390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:33 Heat of formation + Delta-G solvation = -2.603082 kcal Electronic energy + Delta-G solvation = -20253.177294 eV Core-core repulsion = 17035.446074 eV Total energy + Delta-G solvation = -3217.731220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.84441 -40.46891 -38.02126 -34.15973 -33.62903 -32.80898 -31.99716 -29.64585 -27.82311 -26.30324 -26.04697 -23.55934 -22.02912 -21.44528 -20.54604 -20.06268 -18.84644 -17.70630 -16.86233 -16.40279 -16.25165 -15.84803 -15.49746 -15.05167 -14.67545 -14.39546 -14.01694 -13.28422 -13.10646 -12.99534 -12.92385 -12.82323 -12.42552 -12.26048 -12.01212 -11.83428 -11.75775 -11.31794 -10.77101 -10.73231 -10.58504 -10.52697 -10.19334 -9.67683 -9.65395 -9.25748 -9.01853 -8.81135 -8.62931 -8.30062 -5.95931 -3.97369 1.43635 2.33984 2.68443 2.82209 2.95284 3.37980 3.41107 3.45177 3.92411 4.27602 4.49970 4.56588 4.63491 4.74248 4.80402 4.87468 5.02543 5.13052 5.20581 5.30241 5.33146 5.39979 5.48624 5.54604 5.66626 5.67710 5.73034 5.81722 5.88455 5.96503 6.22121 6.29111 6.74380 6.85206 6.95021 7.17243 7.71418 7.78332 7.85459 8.04831 8.40580 8.48745 9.09442 9.66398 11.15611 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028788 B = 0.002641 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.385341 B =10599.954754 C =11323.666334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.130 4.130 12 C 0.543 3.457 13 O -0.535 6.535 14 N -0.655 5.655 15 C 0.105 3.895 16 C -0.124 4.124 17 C -0.027 4.027 18 C -0.009 4.009 19 C -0.208 4.208 20 C -0.213 4.213 21 C -0.046 4.046 22 O -0.177 6.177 23 C 0.107 3.893 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.201 0.799 39 H 0.083 0.917 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 -27.541 1.711 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.134 4.134 11 C -0.170 4.170 12 C 0.335 3.665 13 O -0.411 6.411 14 N -0.393 5.393 15 C -0.018 4.018 16 C -0.143 4.143 17 C -0.065 4.065 18 C -0.059 4.059 19 C -0.227 4.227 20 C -0.232 4.232 21 C -0.113 4.113 22 O -0.073 6.073 23 C -0.016 4.016 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.218 0.782 39 H 0.102 0.898 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.572 -27.119 1.827 27.414 hybrid contribution -0.069 0.909 -0.007 0.912 sum -3.641 -26.209 1.820 26.523 Atomic orbital electron populations 1.69955 1.06037 1.26644 1.51152 1.25020 0.94864 0.99242 0.95381 0.86643 0.79564 0.83034 0.78690 1.20226 1.21327 1.20219 1.21239 0.93168 0.91017 1.50248 0.92613 1.19122 0.93936 0.91396 0.97119 1.21473 0.98690 0.91481 1.01718 1.21794 0.98006 0.93534 1.03671 1.20935 0.89994 0.81407 0.74198 1.90687 1.17432 1.83416 1.49553 1.49721 1.09948 1.04278 1.75321 1.23035 0.87682 0.90591 1.00521 1.23014 0.97001 0.92850 1.01421 1.20047 0.93647 0.95789 0.97002 1.22351 0.96643 0.98097 0.88829 1.21634 0.92390 1.06140 1.02537 1.21869 1.00851 1.03451 0.97032 1.24020 0.80997 1.04943 1.01341 1.84016 1.31670 1.56563 1.35055 1.22929 0.97066 0.81286 1.00323 0.93014 0.96614 0.96598 0.92680 0.92668 0.89465 0.89461 0.90034 0.89595 0.87438 0.88169 0.89185 0.83367 0.83508 0.78242 0.89847 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.25 9.11 -34.44 -0.31 -15.57 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.14 4.44 -26.73 -0.12 -2.26 16 11 C -0.13 -2.30 5.53 -27.89 -0.15 -2.45 16 12 C 0.54 9.49 8.08 -10.98 -0.09 9.40 16 13 O -0.54 -11.49 16.76 5.56 0.09 -11.40 16 14 N -0.66 -8.50 3.69 -185.37 -0.68 -9.18 16 15 C 0.11 0.93 7.98 -8.64 -0.07 0.86 16 16 C -0.12 -0.93 3.97 -90.23 -0.36 -1.29 16 17 C -0.03 -0.16 5.66 -27.88 -0.16 -0.31 16 18 C -0.01 -0.07 6.56 -35.63 -0.23 -0.31 16 19 C -0.21 -1.65 10.81 -39.70 -0.43 -2.08 16 20 C -0.21 -1.62 10.91 -39.70 -0.43 -2.05 16 21 C -0.05 -0.33 12.09 29.42 0.36 0.03 16 22 O -0.18 -1.59 10.65 5.73 0.06 -1.53 16 23 C 0.11 1.02 8.20 -8.50 -0.07 0.95 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 28 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.59 7.88 -51.93 -0.41 0.18 16 33 H 0.11 0.92 8.12 -51.93 -0.42 0.50 16 34 H 0.10 0.41 7.81 -51.93 -0.41 0.01 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.20 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -35.72 344.34 -8.20 -43.92 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -6.27 Total: -4.47 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.31 Total: -13.12 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.05 Total: -35.84 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.15 Total: -12.93 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.72 -8.20 -43.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600370390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.317 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds