Wall clock time and date at job start Thu Apr 9 2020 15:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46928 * 2 1 4 4 C 1.46908 * 111.00228 * 287.99172 * 3 2 1 5 5 C 1.50697 * 109.47377 * 160.36199 * 4 3 2 6 6 H 1.07996 * 120.00197 * 4.65765 * 5 4 3 7 7 C 1.37877 * 119.99868 * 184.66407 * 5 4 3 8 8 N 1.31519 * 120.00099 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99937 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47036 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47167 * 120.00090 * 9 7 5 12 12 H 1.48500 * 109.46801 * 239.99702 * 9 7 5 13 13 C 1.46902 * 111.00564 * 164.03533 * 3 2 1 14 14 C 1.50700 * 109.47072 * 293.95536 * 13 3 2 15 15 C 1.35133 * 125.69074 * 95.01823 * 14 13 3 16 16 N 1.36808 * 107.17639 * 180.02562 * 15 14 13 17 17 C 1.36587 * 132.55734 * 179.97438 * 16 15 14 18 18 C 1.34912 * 120.65059 * 180.02562 * 17 16 15 19 19 C 1.40490 * 120.32371 * 359.97438 * 18 17 16 20 20 C 1.36187 * 119.67207 * 0.02562 * 19 18 17 21 21 F 1.35101 * 120.35421 * 180.02562 * 20 19 18 22 22 C 1.37025 * 107.00390 * 359.97438 * 16 15 14 23 23 N 1.32566 * 108.05037 * 0.02562 * 22 16 15 24 24 H 1.09003 * 109.47156 * 299.37586 * 1 2 3 25 25 H 1.08995 * 109.47411 * 59.38091 * 1 2 3 26 26 H 1.09001 * 109.46668 * 179.38099 * 1 2 3 27 27 H 1.08999 * 109.47508 * 240.00699 * 2 1 3 28 28 H 1.08998 * 109.47665 * 119.99636 * 2 1 3 29 29 H 1.09002 * 109.46662 * 280.36055 * 4 3 2 30 30 H 1.08999 * 109.46687 * 40.35319 * 4 3 2 31 31 H 0.96996 * 120.00311 * 180.02562 * 8 7 5 32 32 H 1.08992 * 109.47588 * 173.95294 * 13 3 2 33 33 H 1.08998 * 109.46652 * 53.94989 * 13 3 2 34 34 H 1.08000 * 126.41417 * 359.97438 * 15 14 13 35 35 H 1.07997 * 119.67126 * 0.02581 * 17 16 15 36 36 H 1.08001 * 119.83639 * 180.02562 * 18 17 16 37 37 H 1.07992 * 120.16257 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7957 2.0226 -1.3044 5 6 1.8470 3.5204 -1.1469 6 1 2.1021 3.9545 -0.1914 7 6 1.5682 4.3367 -2.2225 8 7 1.2570 3.8081 -3.3859 9 14 1.6311 6.1934 -2.0271 10 1 2.0013 6.5317 -0.6293 11 1 2.6430 6.7551 -2.9575 12 1 0.2983 6.7693 -2.3389 13 6 3.4383 1.4420 0.3772 14 6 3.5946 1.0065 1.8114 15 6 3.9001 -0.2424 2.2273 16 7 3.9455 -0.2133 3.5943 17 6 4.2035 -1.1736 4.5307 18 6 4.1840 -0.8744 5.8461 19 6 3.8976 0.4334 6.2719 20 6 3.6384 1.4012 5.3495 21 9 3.3619 2.6635 5.7436 22 6 3.6628 1.0716 3.9773 23 7 3.4542 1.7900 2.8829 24 1 -0.3633 0.5041 0.8955 25 1 -0.3634 0.5234 -0.8843 26 1 -0.3633 -1.0276 -0.0111 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 2.5701 1.7039 -2.0022 30 1 0.8182 1.7308 -1.6884 31 1 1.0612 4.3823 -4.1427 32 1 3.8032 2.4630 0.2657 33 1 4.0128 0.7782 -0.2687 34 1 4.0747 -1.1028 1.5983 35 1 4.4253 -2.1823 4.2149 36 1 4.3903 -1.6439 6.5752 37 1 3.8831 0.6701 7.3255 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611253921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:36 Heat of formation + Delta-G solvation = 54.295663 kcal Electronic energy + Delta-G solvation = -21038.409052 eV Core-core repulsion = 17731.977593 eV Total energy + Delta-G solvation = -3306.431459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.02040 -42.79808 -37.85063 -36.50244 -33.34433 -32.56502 -31.14442 -29.75139 -28.96068 -27.12472 -25.07990 -23.27477 -22.95703 -22.48011 -20.75584 -19.56185 -18.30703 -17.57276 -16.52763 -16.37666 -16.18548 -15.85374 -15.13846 -14.79683 -14.56964 -14.43044 -13.87640 -13.78692 -13.41549 -12.96084 -12.71873 -12.19297 -12.05371 -11.90323 -11.62148 -11.26053 -11.12597 -10.88703 -10.79932 -10.73795 -10.49580 -10.23552 -9.90094 -9.61574 -9.16560 -8.66990 -8.33663 -7.89019 -7.19455 -5.94207 -3.94060 0.47538 1.08443 2.40714 2.83204 3.33177 3.38965 3.46271 3.54749 3.77053 4.09488 4.37618 4.48525 4.52659 4.73540 5.05973 5.18944 5.31633 5.41241 5.42393 5.57018 5.69215 5.70833 5.80601 5.88916 6.10317 6.13916 6.29672 6.35457 6.44866 6.61619 6.74782 6.85411 6.94632 7.27905 7.36881 7.92448 7.97732 8.18487 8.25053 8.61942 9.15681 9.70132 11.16457 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.004600 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.341816 B = 6084.835015 C = 6947.183625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.527 5.527 4 C 0.192 3.808 5 C -0.501 4.501 6 H 0.066 0.934 7 C 0.054 3.946 8 N -0.902 5.902 9 Si 0.895 3.105 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.136 3.864 14 C 0.095 3.905 15 C -0.087 4.087 16 N -0.354 5.354 17 C 0.049 3.951 18 C -0.129 4.129 19 C -0.153 4.153 20 C 0.153 3.847 21 F -0.112 7.112 22 C 0.178 3.822 23 N -0.445 5.445 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.022 0.978 28 H 0.056 0.944 29 H -0.010 1.010 30 H 0.039 0.961 31 H 0.259 0.741 32 H 0.101 0.899 33 H 0.040 0.960 34 H 0.186 0.814 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.752 -13.938 16.863 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 N -0.252 5.252 4 C 0.068 3.932 5 C -0.539 4.539 6 H 0.085 0.915 7 C -0.146 4.146 8 N -0.543 5.543 9 Si 0.723 3.277 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.007 3.993 14 C -0.039 4.039 15 C -0.218 4.218 16 N -0.027 5.027 17 C -0.073 4.073 18 C -0.150 4.150 19 C -0.177 4.177 20 C 0.131 3.869 21 F -0.091 7.091 22 C -0.066 4.066 23 N -0.164 5.164 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.008 0.992 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.058 0.942 34 H 0.203 0.797 35 H 0.183 0.817 36 H 0.174 0.826 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.229 -12.769 16.949 22.116 hybrid contribution 0.540 -0.163 -0.515 0.764 sum 6.770 -12.932 16.434 21.981 Atomic orbital electron populations 1.21726 0.95554 0.99749 1.02948 1.22044 0.96136 0.91017 0.98808 1.62082 1.14383 1.14247 1.34531 1.19814 0.96588 0.94387 0.82459 1.21272 1.45553 0.90615 0.96493 0.91549 1.24966 0.95541 0.98907 0.95202 1.69967 1.48199 1.35063 1.01037 0.86474 0.77459 0.85489 0.78273 1.19486 1.21217 1.21136 1.20373 0.91052 1.02519 0.85386 1.21227 0.97913 0.88691 0.96083 1.22616 1.16947 1.01944 0.80322 1.42635 1.44028 1.09079 1.06919 1.21642 1.02929 0.94176 0.88540 1.20488 1.03415 0.96885 0.94184 1.20957 1.04267 0.92328 1.00179 1.16204 1.02095 0.80851 0.87793 1.91567 1.90607 1.36535 1.90343 1.20719 1.08795 0.82163 0.94897 1.70789 1.19152 1.30900 0.95607 0.92581 0.91891 0.93814 0.95985 0.92558 0.99219 0.94288 0.93126 0.88070 0.94186 0.79742 0.81689 0.82597 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.99 37.16 0.37 -2.17 16 2 C 0.05 0.89 5.55 -3.82 -0.02 0.87 16 3 N -0.53 -11.71 4.37 -237.51 -1.04 -12.75 16 4 C 0.19 5.03 4.59 -4.97 -0.02 5.01 16 5 C -0.50 -14.45 8.61 -34.44 -0.30 -14.75 16 6 H 0.07 1.97 7.66 -52.49 -0.40 1.56 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 9 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.14 2.71 5.32 -4.98 -0.03 2.69 16 14 C 0.10 1.73 5.87 -82.98 -0.49 1.24 16 15 C -0.09 -1.22 10.22 -16.44 -0.17 -1.39 16 16 N -0.35 -4.68 2.95 -62.60 -0.18 -4.86 16 17 C 0.05 0.42 10.95 -16.61 -0.18 0.24 16 18 C -0.13 -0.92 9.98 -39.91 -0.40 -1.32 16 19 C -0.15 -1.42 10.04 -39.47 -0.40 -1.82 16 20 C 0.15 2.11 7.34 -39.22 -0.29 1.82 16 21 F -0.11 -1.71 17.28 2.25 0.04 -1.67 16 22 C 0.18 2.93 7.80 -156.01 -1.22 1.71 16 23 N -0.44 -8.90 11.32 -8.96 -0.10 -9.00 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.06 1.24 6.52 -51.93 -0.34 0.91 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.02 0.39 8.05 -51.93 -0.42 -0.02 16 28 H 0.06 0.93 5.81 -51.93 -0.30 0.63 16 29 H -0.01 -0.27 8.00 -51.93 -0.42 -0.69 16 30 H 0.04 1.08 6.24 -51.93 -0.32 0.76 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.10 2.26 7.32 -51.93 -0.38 1.88 16 33 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.19 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -34.16 316.32 -8.71 -42.86 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -4.67 Total: -3.98 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -3.23 Total: -6.40 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.59 Total: -52.99 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.16 -8.71 -42.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611253921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.157 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds