Wall clock time and date at job start Thu Apr 9 2020 15:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46928 * 2 1 4 4 C 1.46908 * 111.00228 * 287.99172 * 3 2 1 5 5 C 1.50697 * 109.47377 * 160.36199 * 4 3 2 6 6 H 1.07996 * 120.00197 * 4.65765 * 5 4 3 7 7 C 1.37877 * 119.99868 * 184.66407 * 5 4 3 8 8 N 1.31519 * 120.00099 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99937 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47036 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47167 * 120.00090 * 9 7 5 12 12 H 1.48500 * 109.46801 * 239.99702 * 9 7 5 13 13 C 1.46902 * 111.00564 * 164.03533 * 3 2 1 14 14 C 1.50700 * 109.47072 * 293.95536 * 13 3 2 15 15 C 1.35133 * 125.69074 * 95.01823 * 14 13 3 16 16 N 1.36808 * 107.17639 * 180.02562 * 15 14 13 17 17 C 1.36587 * 132.55734 * 179.97438 * 16 15 14 18 18 C 1.34912 * 120.65059 * 180.02562 * 17 16 15 19 19 C 1.40490 * 120.32371 * 359.97438 * 18 17 16 20 20 C 1.36187 * 119.67207 * 0.02562 * 19 18 17 21 21 F 1.35101 * 120.35421 * 180.02562 * 20 19 18 22 22 C 1.37025 * 107.00390 * 359.97438 * 16 15 14 23 23 N 1.32566 * 108.05037 * 0.02562 * 22 16 15 24 24 H 1.09003 * 109.47156 * 299.37586 * 1 2 3 25 25 H 1.08995 * 109.47411 * 59.38091 * 1 2 3 26 26 H 1.09001 * 109.46668 * 179.38099 * 1 2 3 27 27 H 1.08999 * 109.47508 * 240.00699 * 2 1 3 28 28 H 1.08998 * 109.47665 * 119.99636 * 2 1 3 29 29 H 1.09002 * 109.46662 * 280.36055 * 4 3 2 30 30 H 1.08999 * 109.46687 * 40.35319 * 4 3 2 31 31 H 0.96996 * 120.00311 * 180.02562 * 8 7 5 32 32 H 1.08992 * 109.47588 * 173.95294 * 13 3 2 33 33 H 1.08998 * 109.46652 * 53.94989 * 13 3 2 34 34 H 1.08000 * 126.41417 * 359.97438 * 15 14 13 35 35 H 1.07997 * 119.67126 * 0.02581 * 17 16 15 36 36 H 1.08001 * 119.83639 * 180.02562 * 18 17 16 37 37 H 1.07992 * 120.16257 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7957 2.0226 -1.3044 5 6 1.8470 3.5204 -1.1469 6 1 2.1021 3.9545 -0.1914 7 6 1.5682 4.3367 -2.2225 8 7 1.2570 3.8081 -3.3859 9 14 1.6311 6.1934 -2.0271 10 1 2.0013 6.5317 -0.6293 11 1 2.6430 6.7551 -2.9575 12 1 0.2983 6.7693 -2.3389 13 6 3.4383 1.4420 0.3772 14 6 3.5946 1.0065 1.8114 15 6 3.9001 -0.2424 2.2273 16 7 3.9455 -0.2133 3.5943 17 6 4.2035 -1.1736 4.5307 18 6 4.1840 -0.8744 5.8461 19 6 3.8976 0.4334 6.2719 20 6 3.6384 1.4012 5.3495 21 9 3.3619 2.6635 5.7436 22 6 3.6628 1.0716 3.9773 23 7 3.4542 1.7900 2.8829 24 1 -0.3633 0.5041 0.8955 25 1 -0.3634 0.5234 -0.8843 26 1 -0.3633 -1.0276 -0.0111 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 2.5701 1.7039 -2.0022 30 1 0.8182 1.7308 -1.6884 31 1 1.0612 4.3823 -4.1427 32 1 3.8032 2.4630 0.2657 33 1 4.0128 0.7782 -0.2687 34 1 4.0747 -1.1028 1.5983 35 1 4.4253 -2.1823 4.2149 36 1 4.3903 -1.6439 6.5752 37 1 3.8831 0.6701 7.3255 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611253921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:35 Heat of formation + Delta-G solvation = 31.513123 kcal Electronic energy + Delta-G solvation = -21039.396978 eV Core-core repulsion = 17731.977593 eV Total energy + Delta-G solvation = -3307.419384 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.00472 -43.83180 -39.09308 -37.86292 -34.76761 -34.32042 -32.41229 -31.22844 -30.00818 -28.84054 -26.67662 -24.48606 -24.18925 -23.84643 -22.12003 -21.07534 -19.26320 -18.58671 -18.46739 -17.48325 -17.32937 -16.79587 -16.64646 -16.28982 -15.98530 -15.63895 -15.44185 -15.07302 -14.70656 -14.43657 -14.05249 -13.53161 -13.33029 -13.14381 -12.97303 -12.91587 -12.73538 -12.64401 -12.56173 -12.23615 -12.11891 -11.75561 -11.53951 -11.29931 -11.03345 -10.58834 -9.75407 -8.96079 -8.82562 -8.19104 -6.27325 -0.35085 0.18548 1.37365 1.38298 1.49311 1.53293 1.77063 2.34825 2.41220 2.85877 3.11663 3.19588 3.43425 3.65697 3.71557 3.92413 4.19904 4.23221 4.29333 4.39630 4.48938 4.66313 4.70797 4.77892 4.86129 4.96306 4.97216 4.99765 5.03386 5.25970 5.27589 5.36565 5.49233 5.52560 5.69052 6.05307 6.11536 6.39783 6.67410 6.87520 6.88429 7.41459 8.90990 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.004600 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.341816 B = 6084.835015 C = 6947.183625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.049 3.951 3 N -0.545 5.545 4 C 0.210 3.790 5 C -0.519 4.519 6 H 0.047 0.953 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.275 1.275 11 H -0.273 1.273 12 H -0.275 1.275 13 C 0.144 3.856 14 C 0.057 3.943 15 C -0.068 4.068 16 N -0.352 5.352 17 C 0.049 3.951 18 C -0.117 4.117 19 C -0.107 4.107 20 C 0.088 3.912 21 F -0.136 7.136 22 C 0.165 3.835 23 N -0.521 5.521 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.083 0.917 27 H 0.031 0.969 28 H 0.082 0.918 29 H -0.030 1.030 30 H 0.018 0.982 31 H 0.265 0.735 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.225 0.775 35 H 0.214 0.786 36 H 0.212 0.788 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 -17.158 19.477 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 N -0.270 5.270 4 C 0.084 3.916 5 C -0.558 4.558 6 H 0.066 0.934 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.198 1.198 12 H -0.201 1.201 13 C 0.015 3.985 14 C -0.076 4.076 15 C -0.200 4.200 16 N -0.024 5.024 17 C -0.071 4.071 18 C -0.137 4.137 19 C -0.131 4.131 20 C 0.066 3.934 21 F -0.114 7.114 22 C -0.080 4.080 23 N -0.242 5.242 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.049 0.951 28 H 0.101 0.899 29 H -0.013 1.013 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.242 0.758 35 H 0.231 0.769 36 H 0.229 0.771 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.156 -16.015 19.570 26.281 hybrid contribution 0.317 0.667 -1.102 1.327 sum 7.473 -15.349 18.468 25.150 Atomic orbital electron populations 1.21695 0.95256 1.01631 1.00867 1.22135 0.96349 0.89001 1.00336 1.61945 1.16405 1.16834 1.31821 1.19412 0.94595 0.93426 0.84173 1.21473 1.45932 0.92474 0.95902 0.93444 1.25756 0.94948 1.03545 0.94802 1.70056 1.48617 1.36799 1.01673 0.85465 0.78045 0.79902 0.78001 1.20011 1.19838 1.20052 1.20129 0.89718 1.00694 0.87953 1.20874 1.01452 0.90708 0.94572 1.22873 1.14880 1.01151 0.81068 1.42841 1.43423 1.08894 1.07213 1.22706 1.00958 0.95023 0.88401 1.21241 1.00984 0.96776 0.94736 1.21607 0.98515 0.91992 1.01000 1.16705 1.07360 0.81513 0.87831 1.91494 1.91481 1.38113 1.90342 1.21015 1.08530 0.83374 0.95098 1.70595 1.22580 1.33580 0.97410 0.93852 0.94691 0.89871 0.95119 0.89942 1.01272 0.96367 0.92642 0.92278 0.92318 0.75836 0.76913 0.77114 0.79769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.99 71.98 0.72 -4.18 16 2 C 0.05 1.82 5.55 86.30 0.48 2.30 16 3 N -0.54 -25.45 4.37 -905.36 -3.96 -29.41 16 4 C 0.21 11.66 4.59 85.55 0.39 12.06 16 5 C -0.52 -31.75 8.61 25.60 0.22 -31.53 16 6 H 0.05 3.02 7.66 -2.91 -0.02 2.99 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 9 Si 0.96 47.57 29.54 68.60 2.03 49.60 16 10 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 C 0.14 6.10 5.32 85.56 0.46 6.56 16 14 C 0.06 2.12 5.87 41.59 0.24 2.37 16 15 C -0.07 -1.79 10.22 83.20 0.85 -0.94 16 16 N -0.35 -8.41 2.95 -351.96 -1.04 -9.44 16 17 C 0.05 0.58 10.95 83.19 0.91 1.49 16 18 C -0.12 -0.94 9.98 22.05 0.22 -0.72 16 19 C -0.11 -1.56 10.04 22.34 0.22 -1.34 16 20 C 0.09 2.39 7.34 22.50 0.17 2.55 16 21 F -0.14 -4.34 17.28 44.97 0.78 -3.56 16 22 C 0.17 5.45 7.80 134.17 1.05 6.50 16 23 N -0.52 -22.12 11.32 -182.27 -2.06 -24.18 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.42 6.52 -2.39 -0.02 1.41 16 26 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.03 1.08 8.05 -2.39 -0.02 1.06 16 28 H 0.08 2.60 5.81 -2.39 -0.01 2.58 16 29 H -0.03 -1.77 8.00 -2.39 -0.02 -1.78 16 30 H 0.02 1.08 6.24 -2.39 -0.01 1.06 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.06 2.92 7.32 -2.39 -0.02 2.90 16 33 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 34 H 0.23 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.21 0.44 8.06 -2.91 -0.02 0.41 16 36 H 0.21 -0.50 8.06 -2.91 -0.02 -0.52 16 37 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -83.51 316.32 3.50 -80.01 By element: Atomic # 1 Polarization: -2.88 SS G_CDS: 1.08 Total: -1.80 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.39 Total: -3.97 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -6.77 Total: -120.27 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -83.51 3.50 -80.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611253921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.524 kcal (2) G-P(sol) polarization free energy of solvation -83.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds