Wall clock time and date at job start Thu Apr 9 2020 15:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.50699 * 109.47221 * 170.00202 * 14 12 2 16 16 C 1.35140 * 125.69306 * 94.71821 * 15 14 12 17 17 N 1.36799 * 107.18020 * 179.87961 * 16 15 14 18 18 C 1.36579 * 132.55799 * 180.10305 * 17 16 15 19 19 C 1.34919 * 120.65147 * 180.34926 * 18 17 16 20 20 C 1.40481 * 120.32111 * 359.95280 * 19 18 17 21 21 C 1.36194 * 119.67224 * 0.02562 * 20 19 18 22 22 F 1.35107 * 120.35324 * 180.02562 * 21 20 19 23 23 C 1.37033 * 107.00334 * 0.37435 * 17 16 15 24 24 N 1.32565 * 108.04463 * 359.76747 * 23 17 16 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 30 30 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 31 31 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 32 32 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 33 33 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 34 34 H 1.08003 * 126.40575 * 359.97438 * 16 15 14 35 35 H 1.08004 * 119.67326 * 0.32546 * 18 17 16 36 36 H 1.07999 * 119.84153 * 179.97438 * 19 18 17 37 37 H 1.07996 * 120.16048 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5793 16 6 1.9506 -1.3957 -4.4598 17 7 2.9320 -1.7008 -5.3627 18 6 2.9604 -2.5213 -6.4542 19 6 4.0851 -2.6510 -7.1881 20 6 5.2457 -1.9407 -6.8388 21 6 5.2319 -1.1185 -5.7532 22 9 6.3401 -0.4285 -5.4052 23 6 4.0475 -0.9944 -4.9960 24 7 3.7484 -0.2862 -3.9160 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 0.3491 -1.9549 -1.3693 30 1 1.8134 -2.5258 -2.2045 31 1 1.7059 -2.6221 -0.4301 32 1 0.6815 0.1053 -2.6087 33 1 2.1026 1.1189 -2.2604 34 1 0.9427 -1.7838 -4.4529 35 1 2.0739 -3.0720 -6.7323 36 1 4.0931 -3.3037 -8.0484 37 1 6.1444 -2.0462 -7.4284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611268579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:38 Heat of formation + Delta-G solvation = 70.582663 kcal Electronic energy + Delta-G solvation = -21110.532171 eV Core-core repulsion = 17804.806969 eV Total energy + Delta-G solvation = -3305.725202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.07430 -42.87674 -38.04864 -36.92535 -33.43840 -32.73370 -31.03301 -29.52285 -28.75141 -27.07087 -25.25656 -24.29684 -23.08788 -22.90591 -20.56548 -19.21383 -18.38999 -17.64022 -16.63873 -16.48145 -16.33736 -15.91116 -15.39491 -15.04880 -14.53965 -14.38584 -14.08628 -13.70511 -13.40543 -12.97270 -12.76284 -12.37693 -12.22295 -12.14405 -11.88470 -11.45932 -11.24149 -11.10771 -10.88131 -10.76817 -10.32066 -10.00456 -9.97479 -9.50302 -9.04403 -8.77012 -8.53416 -7.95708 -7.30299 -6.01653 -3.99372 0.41764 1.02216 2.33808 2.74966 3.24681 3.28367 3.39659 3.41946 3.70047 4.02941 4.32873 4.42835 4.43650 4.65140 4.96278 5.12405 5.22582 5.28675 5.35644 5.51672 5.63908 5.71606 5.82126 5.99409 6.10731 6.18910 6.26198 6.28129 6.33057 6.53316 6.58896 6.71263 6.87006 6.89092 7.20661 7.66955 7.86230 7.95275 8.09996 8.70555 9.07077 9.60218 11.11667 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.032688 B = 0.003998 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.368498 B = 7001.576880 C = 7297.984691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.182 3.818 3 H 0.042 0.958 4 C -0.498 4.498 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.267 1.267 12 N -0.515 5.515 13 C 0.031 3.969 14 C 0.125 3.875 15 C 0.091 3.909 16 C -0.081 4.081 17 N -0.353 5.353 18 C 0.049 3.951 19 C -0.127 4.127 20 C -0.151 4.151 21 C 0.152 3.848 22 F -0.112 7.112 23 C 0.181 3.819 24 N -0.449 5.449 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.020 0.980 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.186 0.814 35 H 0.167 0.833 36 H 0.157 0.843 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -3.717 -23.850 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.074 3.926 3 H 0.059 0.941 4 C -0.537 4.537 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.238 5.238 13 C -0.117 4.117 14 C -0.004 4.004 15 C -0.043 4.043 16 C -0.213 4.213 17 N -0.026 5.026 18 C -0.073 4.073 19 C -0.148 4.148 20 C -0.175 4.175 21 C 0.130 3.870 22 F -0.090 7.090 23 C -0.064 4.064 24 N -0.168 5.168 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.203 0.797 35 H 0.184 0.816 36 H 0.175 0.825 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.336 -3.222 -23.137 23.363 hybrid contribution -1.893 0.360 -0.191 1.937 sum -1.558 -2.862 -23.328 23.554 Atomic orbital electron populations 1.22845 1.01680 1.01108 0.98969 1.19815 0.88660 0.95409 0.88676 0.94055 1.20919 1.31323 1.13735 0.87697 0.90050 1.24908 0.95965 0.96573 0.95795 1.69882 1.45851 1.40371 0.97834 0.86890 0.80422 0.84010 0.77011 1.20840 1.22443 1.19258 1.62098 1.58781 1.02254 1.00662 1.22325 0.96048 0.91662 1.01654 1.20453 0.95234 0.97776 0.86951 1.21023 0.90154 0.96492 0.96596 1.22590 0.95668 1.08002 0.95040 1.42621 1.11309 1.29348 1.19299 1.21660 1.01330 0.96166 0.88117 1.20509 0.90981 1.01975 1.01359 1.20978 1.00908 0.98428 0.97227 1.16194 0.80926 0.95443 0.94467 1.91569 1.48760 1.77119 1.91587 1.20669 0.89222 0.98998 0.97482 1.70733 1.14547 1.22368 1.09187 0.92339 0.95268 0.93617 0.92688 0.96207 0.93751 0.90288 0.93634 0.89450 0.79663 0.81592 0.82504 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 7.92 37.16 0.29 -3.70 16 2 C 0.18 4.34 1.90 -68.87 -0.13 4.21 16 3 H 0.04 1.03 6.99 -51.93 -0.36 0.67 16 4 C -0.50 -14.14 8.55 -34.44 -0.29 -14.43 16 5 H 0.08 2.54 7.35 -52.49 -0.39 2.16 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 8 Si 0.89 22.04 24.37 -169.99 -4.14 17.90 16 9 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 12 N -0.51 -10.99 4.69 -237.73 -1.12 -12.11 16 13 C 0.03 0.60 8.61 60.06 0.52 1.12 16 14 C 0.13 2.23 5.07 -4.97 -0.03 2.21 16 15 C 0.09 1.55 5.82 -82.98 -0.48 1.07 16 16 C -0.08 -1.08 10.48 -16.44 -0.17 -1.26 16 17 N -0.35 -4.46 2.95 -62.60 -0.18 -4.65 16 18 C 0.05 0.40 10.95 -16.62 -0.18 0.22 16 19 C -0.13 -0.86 9.98 -39.92 -0.40 -1.26 16 20 C -0.15 -1.33 10.04 -39.47 -0.40 -1.73 16 21 C 0.15 2.00 7.34 -39.22 -0.29 1.71 16 22 F -0.11 -1.62 17.28 2.25 0.04 -1.58 16 23 C 0.18 2.83 7.80 -156.01 -1.22 1.61 16 24 N -0.45 -8.46 11.32 -8.97 -0.10 -8.56 16 25 H 0.06 1.21 6.33 -51.93 -0.33 0.88 16 26 H 0.03 0.53 6.91 -51.93 -0.36 0.17 16 27 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.02 0.34 6.21 -51.93 -0.32 0.02 16 30 H 0.04 0.76 6.30 -51.93 -0.33 0.43 16 31 H 0.08 1.70 6.86 -51.93 -0.36 1.34 16 32 H 0.05 0.71 7.06 -51.93 -0.37 0.34 16 33 H 0.09 1.61 7.93 -51.93 -0.41 1.20 16 34 H 0.19 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.17 0.75 8.06 -52.48 -0.42 0.32 16 36 H 0.16 0.46 8.06 -52.49 -0.42 0.03 16 37 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -34.31 300.73 -7.34 -41.65 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.26 Total: -1.83 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.87 Total: -8.33 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.63 Total: -52.34 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.31 -7.34 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611268579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.231 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds