Wall clock time and date at job start Thu Apr 9 2020 15:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.50699 * 109.47221 * 170.00202 * 14 12 2 16 16 C 1.35140 * 125.69306 * 94.71821 * 15 14 12 17 17 N 1.36799 * 107.18020 * 179.87961 * 16 15 14 18 18 C 1.36579 * 132.55799 * 180.10305 * 17 16 15 19 19 C 1.34919 * 120.65147 * 180.34926 * 18 17 16 20 20 C 1.40481 * 120.32111 * 359.95280 * 19 18 17 21 21 C 1.36194 * 119.67224 * 0.02562 * 20 19 18 22 22 F 1.35107 * 120.35324 * 180.02562 * 21 20 19 23 23 C 1.37033 * 107.00334 * 0.37435 * 17 16 15 24 24 N 1.32565 * 108.04463 * 359.76747 * 23 17 16 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 30 30 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 31 31 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 32 32 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 33 33 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 34 34 H 1.08003 * 126.40575 * 359.97438 * 16 15 14 35 35 H 1.08004 * 119.67326 * 0.32546 * 18 17 16 36 36 H 1.07999 * 119.84153 * 179.97438 * 19 18 17 37 37 H 1.07996 * 120.16048 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5793 16 6 1.9506 -1.3957 -4.4598 17 7 2.9320 -1.7008 -5.3627 18 6 2.9604 -2.5213 -6.4542 19 6 4.0851 -2.6510 -7.1881 20 6 5.2457 -1.9407 -6.8388 21 6 5.2319 -1.1185 -5.7532 22 9 6.3401 -0.4285 -5.4052 23 6 4.0475 -0.9944 -4.9960 24 7 3.7484 -0.2862 -3.9160 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 0.3491 -1.9549 -1.3693 30 1 1.8134 -2.5258 -2.2045 31 1 1.7059 -2.6221 -0.4301 32 1 0.6815 0.1053 -2.6087 33 1 2.1026 1.1189 -2.2604 34 1 0.9427 -1.7838 -4.4529 35 1 2.0739 -3.0720 -6.7323 36 1 4.0931 -3.3037 -8.0484 37 1 6.1444 -2.0462 -7.4284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611268579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:38 Heat of formation + Delta-G solvation = 45.683437 kcal Electronic energy + Delta-G solvation = -21111.611882 eV Core-core repulsion = 17804.806969 eV Total energy + Delta-G solvation = -3306.804913 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.00942 -43.83178 -39.38191 -38.10205 -34.80744 -34.29838 -32.51376 -30.82433 -29.79076 -28.39940 -27.20216 -25.74207 -24.02644 -23.87772 -21.90304 -20.83384 -19.28011 -18.69626 -18.46548 -17.54149 -17.35177 -17.10490 -16.59194 -16.34313 -15.86327 -15.66127 -15.41496 -15.06040 -14.67730 -14.53528 -14.15358 -13.86072 -13.44899 -13.21516 -13.07704 -12.89020 -12.84284 -12.71369 -12.39066 -12.14341 -11.87977 -11.72865 -11.43700 -11.14761 -11.03102 -10.74030 -9.77147 -8.91019 -8.81047 -8.26185 -6.28952 -0.35969 0.18248 1.30162 1.38053 1.47745 1.49323 1.76295 2.33838 2.33911 2.85362 3.08121 3.18807 3.41290 3.65845 3.71091 3.91882 4.20462 4.30667 4.39591 4.43527 4.44838 4.59532 4.64205 4.71682 4.75927 4.82958 4.90874 4.95685 4.98916 5.03624 5.22141 5.44242 5.48521 5.52787 5.64856 6.03636 6.05307 6.44073 6.70482 6.76771 6.85412 7.35476 8.91223 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.032688 B = 0.003998 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.368498 B = 7001.576880 C = 7297.984691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.185 3.815 3 H 0.028 0.972 4 C -0.502 4.502 5 H 0.032 0.968 6 C 0.010 3.990 7 N -0.952 5.952 8 Si 0.953 3.047 9 H -0.261 1.261 10 H -0.300 1.300 11 H -0.250 1.250 12 N -0.544 5.544 13 C 0.043 3.957 14 C 0.133 3.867 15 C 0.053 3.947 16 C -0.067 4.067 17 N -0.353 5.353 18 C 0.048 3.952 19 C -0.118 4.118 20 C -0.109 4.109 21 C 0.088 3.912 22 F -0.135 7.135 23 C 0.164 3.836 24 N -0.520 5.520 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.265 0.735 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.225 0.775 35 H 0.213 0.787 36 H 0.211 0.789 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 -4.615 -27.955 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.077 3.923 3 H 0.046 0.954 4 C -0.541 4.541 5 H 0.050 0.950 6 C -0.187 4.187 7 N -0.593 5.593 8 Si 0.780 3.220 9 H -0.187 1.187 10 H -0.228 1.228 11 H -0.174 1.174 12 N -0.267 5.267 13 C -0.105 4.105 14 C 0.004 3.996 15 C -0.079 4.079 16 C -0.199 4.199 17 N -0.025 5.025 18 C -0.072 4.072 19 C -0.138 4.138 20 C -0.133 4.133 21 C 0.067 3.933 22 F -0.113 7.113 23 C -0.082 4.082 24 N -0.241 5.241 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.241 0.759 35 H 0.230 0.770 36 H 0.228 0.772 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.976 -4.132 -27.285 27.666 hybrid contribution -1.020 0.445 0.845 1.397 sum -2.996 -3.687 -26.439 26.863 Atomic orbital electron populations 1.22672 0.98973 1.01824 1.00312 1.19569 0.90623 0.94046 0.88030 0.95385 1.21164 1.30322 1.12385 0.90187 0.95010 1.25800 0.97616 1.00075 0.95205 1.70050 1.48020 1.42674 0.98539 0.85793 0.79148 0.79830 0.77192 1.18717 1.22835 1.17416 1.61886 1.60095 1.03384 1.01367 1.22186 0.97316 0.90279 1.00749 1.20355 0.97025 0.96320 0.85869 1.20933 0.90316 0.98976 0.97725 1.22933 0.96743 1.06370 0.93853 1.42849 1.10066 1.29383 1.20175 1.22687 1.03709 0.94691 0.86130 1.21234 0.89246 1.01193 1.02086 1.21603 1.02829 0.94577 0.94317 1.16692 0.80433 0.99013 0.97196 1.91497 1.49580 1.78122 1.92150 1.20972 0.90869 0.99129 0.97184 1.70568 1.16221 1.25359 1.11934 0.91984 0.91465 0.94508 0.92596 0.93888 0.91737 0.94074 0.90663 0.91315 0.75888 0.77007 0.77244 0.79846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.27 7.92 71.98 0.57 -6.70 16 2 C 0.19 8.95 1.90 44.17 0.08 9.04 16 3 H 0.03 1.42 6.99 -2.39 -0.02 1.41 16 4 C -0.50 -29.81 8.55 25.60 0.22 -29.59 16 5 H 0.03 2.14 7.35 -2.91 -0.02 2.12 16 6 C 0.01 0.57 5.45 84.65 0.46 1.03 16 7 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 8 Si 0.95 45.86 24.37 68.60 1.67 47.53 16 9 H -0.26 -11.69 6.87 99.48 0.68 -11.00 16 10 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 11 H -0.25 -11.23 6.53 99.48 0.65 -10.58 16 12 N -0.54 -23.62 4.69 -906.04 -4.25 -27.87 16 13 C 0.04 1.63 8.61 127.69 1.10 2.73 16 14 C 0.13 4.70 5.07 85.56 0.43 5.14 16 15 C 0.05 1.80 5.82 41.60 0.24 2.04 16 16 C -0.07 -1.63 10.48 83.20 0.87 -0.75 16 17 N -0.35 -8.02 2.95 -351.96 -1.04 -9.05 16 18 C 0.05 0.54 10.95 83.19 0.91 1.45 16 19 C -0.12 -0.91 9.98 22.05 0.22 -0.69 16 20 C -0.11 -1.54 10.04 22.34 0.22 -1.31 16 21 C 0.09 2.31 7.34 22.50 0.17 2.48 16 22 F -0.13 -4.13 17.28 44.97 0.78 -3.35 16 23 C 0.16 5.14 7.80 134.17 1.05 6.19 16 24 N -0.52 -20.50 11.32 -182.28 -2.06 -22.56 16 25 H 0.06 2.45 6.33 -2.39 -0.02 2.43 16 26 H 0.07 2.21 6.91 -2.39 -0.02 2.19 16 27 H 0.04 1.55 3.27 -2.38 -0.01 1.55 16 28 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 29 H 0.04 1.41 6.21 -2.39 -0.01 1.40 16 30 H 0.06 2.16 6.30 -2.38 -0.02 2.14 16 31 H 0.04 1.85 6.86 -2.39 -0.02 1.83 16 32 H 0.08 2.15 7.06 -2.39 -0.02 2.13 16 33 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 34 H 0.22 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.21 0.38 8.06 -2.91 -0.02 0.36 16 36 H 0.21 -0.50 8.06 -2.91 -0.02 -0.52 16 37 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -84.14 300.73 2.96 -81.18 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.02 Total: 4.08 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 6.55 Total: -8.96 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -7.05 Total: -120.48 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.67 Total: 47.53 kcal Total: -84.14 2.96 -81.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611268579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.861 kcal (2) G-P(sol) polarization free energy of solvation -84.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds