Wall clock time and date at job start Thu Apr 9 2020 15:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46905 * 110.99922 * 176.04894 * 12 2 1 14 14 C 1.46895 * 110.99789 * 300.00188 * 12 2 1 15 15 C 1.50702 * 109.46960 * 169.99981 * 14 12 2 16 16 C 1.35136 * 125.69447 * 94.71437 * 15 14 12 17 17 N 1.36803 * 107.18030 * 179.87977 * 16 15 14 18 18 C 1.36583 * 132.55612 * 180.10387 * 17 16 15 19 19 C 1.34920 * 120.64946 * 180.35009 * 18 17 16 20 20 C 1.40486 * 120.32067 * 359.95667 * 19 18 17 21 21 C 1.36189 * 119.67556 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.35683 * 180.02562 * 21 20 19 23 23 C 1.37024 * 107.00266 * 0.38034 * 17 16 15 24 24 N 1.32567 * 108.05381 * 359.76436 * 23 17 16 25 25 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 26 26 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 28 28 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 29 29 H 1.08991 * 109.47190 * 59.99892 * 13 12 2 30 30 H 1.09001 * 109.46809 * 180.02562 * 13 12 2 31 31 H 1.08997 * 109.46774 * 299.99652 * 13 12 2 32 32 H 1.08998 * 109.47225 * 289.99542 * 14 12 2 33 33 H 1.09001 * 109.47444 * 49.99844 * 14 12 2 34 34 H 1.07999 * 126.41002 * 0.02562 * 16 15 14 35 35 H 1.07999 * 119.67288 * 0.32768 * 18 17 16 36 36 H 1.07996 * 119.83948 * 179.97438 * 19 18 17 37 37 H 1.08004 * 120.16178 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7944 1.1870 14 6 1.5486 -0.0264 2.4210 15 6 1.8580 -0.8911 3.6159 16 6 2.9533 -0.7889 4.4008 17 7 2.8488 -1.7510 5.3677 18 6 3.6547 -2.1010 6.4134 19 6 3.3148 -3.1169 7.2336 20 6 2.1230 -3.8302 7.0229 21 6 1.3094 -3.4921 5.9843 22 9 0.1598 -4.1684 5.7693 23 6 1.6798 -2.4271 5.1355 24 7 1.0987 -1.8897 4.0721 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7081 1.1608 -3.4844 29 1 3.9186 0.2052 1.1591 30 1 3.8210 -1.3116 2.0859 31 1 3.8030 -1.3531 0.3067 32 1 2.0519 0.9346 2.5280 33 1 0.4722 0.1324 2.3564 34 1 3.7591 -0.0788 4.2875 35 1 4.5731 -1.5595 6.5852 36 1 3.9619 -3.3829 8.0563 37 1 1.8532 -4.6428 7.6813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611268580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:41 Heat of formation + Delta-G solvation = 62.035531 kcal Electronic energy + Delta-G solvation = -21053.995692 eV Core-core repulsion = 17747.899859 eV Total energy + Delta-G solvation = -3306.095833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.04714 -42.81738 -37.86708 -36.56974 -33.38507 -32.83663 -30.68836 -29.24736 -28.68116 -27.20561 -24.76619 -23.86220 -23.01536 -22.77107 -20.56491 -19.26968 -18.33682 -17.60432 -16.45517 -16.36871 -16.22999 -15.81388 -15.25474 -14.93770 -14.54306 -14.08022 -13.88555 -13.66857 -13.53256 -12.73612 -12.44836 -12.20712 -12.07179 -11.85372 -11.74935 -11.08566 -10.96906 -10.79767 -10.69141 -10.59592 -10.12020 -9.98656 -9.97912 -9.74433 -8.89270 -8.68127 -8.36114 -7.90813 -7.12941 -5.97207 -4.01281 0.45664 1.06904 2.38959 2.81434 3.30089 3.34213 3.40349 3.43598 3.74496 4.07442 4.36249 4.45131 4.47425 4.71543 5.13663 5.21107 5.29238 5.34276 5.44761 5.55906 5.68100 5.78073 5.98044 6.14575 6.26389 6.31302 6.41372 6.64744 6.78919 6.90984 6.95224 7.14052 7.20352 7.56453 7.76189 7.87376 7.93636 8.26280 8.36397 8.63097 9.04747 9.63353 11.09651 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.030430 B = 0.003859 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.914456 B = 7254.959978 C = 7395.715417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.529 5.529 13 C 0.037 3.963 14 C 0.123 3.877 15 C 0.095 3.905 16 C -0.083 4.083 17 N -0.353 5.353 18 C 0.050 3.950 19 C -0.129 4.129 20 C -0.152 4.152 21 C 0.151 3.849 22 F -0.113 7.113 23 C 0.179 3.821 24 N -0.449 5.449 25 H 0.085 0.915 26 H 0.036 0.964 27 H 0.009 0.991 28 H 0.260 0.740 29 H 0.012 0.988 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.186 0.814 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.475 -4.451 20.574 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.108 3.892 3 H 0.017 0.983 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.254 5.254 13 C -0.111 4.111 14 C -0.007 4.007 15 C -0.039 4.039 16 C -0.215 4.215 17 N -0.026 5.026 18 C -0.072 4.072 19 C -0.150 4.150 20 C -0.176 4.176 21 C 0.129 3.871 22 F -0.091 7.091 23 C -0.065 4.065 24 N -0.169 5.169 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.203 0.797 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.444 -5.017 20.020 21.345 hybrid contribution 1.275 0.470 -0.523 1.456 sum 6.719 -4.547 19.496 21.117 Atomic orbital electron populations 1.21864 0.97549 0.99960 0.99843 1.19275 0.92494 0.91899 0.85516 0.98259 1.21146 1.30976 1.12198 0.89696 0.91899 1.24918 0.95247 0.95077 0.98962 1.69895 1.36970 1.23065 1.23365 0.86519 0.79199 0.79302 0.82499 1.20654 1.21366 1.20003 1.62074 1.09238 1.52717 1.01362 1.22231 0.88823 0.98950 1.01112 1.20511 1.02359 0.91513 0.86268 1.21137 0.90685 0.95178 0.96932 1.22620 1.05017 0.99593 0.94229 1.42626 1.16498 1.23613 1.19907 1.21657 0.97012 0.99720 0.88808 1.20494 0.97703 0.95907 1.00883 1.20964 0.95234 1.03103 0.98315 1.16193 0.84862 0.91124 0.94884 1.91563 1.45999 1.77309 1.94228 1.20684 0.87725 0.99384 0.98732 1.70749 1.29303 1.09709 1.07110 0.89628 0.94460 0.97173 0.93016 0.96953 0.94116 0.90612 0.94116 0.88752 0.79687 0.81636 0.82561 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.76 37.15 0.33 -3.07 16 2 C 0.21 5.50 2.06 -68.86 -0.14 5.36 16 3 H 0.00 0.00 8.14 -51.93 -0.42 -0.43 16 4 C -0.50 -13.96 7.93 -34.44 -0.27 -14.23 16 5 H 0.06 1.76 6.39 -52.48 -0.34 1.42 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.53 -11.90 4.61 -237.73 -1.10 -13.00 16 13 C 0.04 0.75 9.04 60.07 0.54 1.30 16 14 C 0.12 2.37 5.31 -4.98 -0.03 2.34 16 15 C 0.09 1.69 5.82 -82.98 -0.48 1.21 16 16 C -0.08 -1.17 10.48 -16.44 -0.17 -1.35 16 17 N -0.35 -4.66 2.95 -62.60 -0.18 -4.85 16 18 C 0.05 0.43 10.95 -16.61 -0.18 0.25 16 19 C -0.13 -0.91 9.98 -39.91 -0.40 -1.31 16 20 C -0.15 -1.38 10.04 -39.47 -0.40 -1.78 16 21 C 0.15 2.04 7.34 -39.22 -0.29 1.76 16 22 F -0.11 -1.66 17.28 2.25 0.04 -1.62 16 23 C 0.18 2.89 7.80 -156.01 -1.22 1.67 16 24 N -0.45 -8.73 11.32 -8.96 -0.10 -8.83 16 25 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.01 0.22 6.20 -51.93 -0.32 -0.11 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.72 6.30 -51.93 -0.33 0.40 16 31 H 0.08 1.64 6.23 -51.93 -0.32 1.32 16 32 H 0.04 0.72 8.12 -51.93 -0.42 0.29 16 33 H 0.09 1.91 5.83 -51.93 -0.30 1.61 16 34 H 0.19 2.00 8.06 -52.49 -0.42 1.57 16 35 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.16 0.51 8.06 -52.49 -0.42 0.08 16 37 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 309.28 15.07 4.66 4.66 Total: -1.00 -32.82 309.28 -8.32 -41.14 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.44 Total: -2.74 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.80 Total: -6.31 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.76 Total: -51.73 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.82 -8.32 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611268580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.176 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds