Wall clock time and date at job start Thu Apr 9 2020 15:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46905 * 110.99922 * 176.04894 * 12 2 1 14 14 C 1.46895 * 110.99789 * 300.00188 * 12 2 1 15 15 C 1.50702 * 109.46960 * 169.99981 * 14 12 2 16 16 C 1.35136 * 125.69447 * 94.71437 * 15 14 12 17 17 N 1.36803 * 107.18030 * 179.87977 * 16 15 14 18 18 C 1.36583 * 132.55612 * 180.10387 * 17 16 15 19 19 C 1.34920 * 120.64946 * 180.35009 * 18 17 16 20 20 C 1.40486 * 120.32067 * 359.95667 * 19 18 17 21 21 C 1.36189 * 119.67556 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.35683 * 180.02562 * 21 20 19 23 23 C 1.37024 * 107.00266 * 0.38034 * 17 16 15 24 24 N 1.32567 * 108.05381 * 359.76436 * 23 17 16 25 25 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 26 26 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 28 28 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 29 29 H 1.08991 * 109.47190 * 59.99892 * 13 12 2 30 30 H 1.09001 * 109.46809 * 180.02562 * 13 12 2 31 31 H 1.08997 * 109.46774 * 299.99652 * 13 12 2 32 32 H 1.08998 * 109.47225 * 289.99542 * 14 12 2 33 33 H 1.09001 * 109.47444 * 49.99844 * 14 12 2 34 34 H 1.07999 * 126.41002 * 0.02562 * 16 15 14 35 35 H 1.07999 * 119.67288 * 0.32768 * 18 17 16 36 36 H 1.07996 * 119.83948 * 179.97438 * 19 18 17 37 37 H 1.08004 * 120.16178 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7944 1.1870 14 6 1.5486 -0.0264 2.4210 15 6 1.8580 -0.8911 3.6159 16 6 2.9533 -0.7889 4.4008 17 7 2.8488 -1.7510 5.3677 18 6 3.6547 -2.1010 6.4134 19 6 3.3148 -3.1169 7.2336 20 6 2.1230 -3.8302 7.0229 21 6 1.3094 -3.4921 5.9843 22 9 0.1598 -4.1684 5.7693 23 6 1.6798 -2.4271 5.1355 24 7 1.0987 -1.8897 4.0721 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7081 1.1608 -3.4844 29 1 3.9186 0.2052 1.1591 30 1 3.8210 -1.3116 2.0859 31 1 3.8030 -1.3531 0.3067 32 1 2.0519 0.9346 2.5280 33 1 0.4722 0.1324 2.3564 34 1 3.7591 -0.0788 4.2875 35 1 4.5731 -1.5595 6.5852 36 1 3.9619 -3.3829 8.0563 37 1 1.8532 -4.6428 7.6813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611268580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:41 Heat of formation + Delta-G solvation = 40.668845 kcal Electronic energy + Delta-G solvation = -21054.922221 eV Core-core repulsion = 17747.899859 eV Total energy + Delta-G solvation = -3307.022362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.00233 -43.83094 -39.14992 -37.96205 -34.88614 -34.29055 -32.02689 -30.84933 -29.85268 -28.67594 -26.72847 -25.31648 -24.01208 -23.86587 -22.02654 -20.93560 -19.27313 -18.57513 -18.25615 -17.53338 -17.36455 -16.94858 -16.59448 -16.17050 -15.83506 -15.56782 -15.45914 -15.07745 -14.66884 -14.28348 -13.87446 -13.46136 -13.41667 -13.04863 -12.95178 -12.88866 -12.70581 -12.54463 -12.44290 -12.11167 -11.97155 -11.79829 -11.70777 -11.06799 -10.90991 -10.51740 -9.75722 -8.91627 -8.81910 -8.10589 -6.22238 -0.35512 0.18330 1.41661 1.43721 1.48888 1.53230 1.76581 2.34166 2.43706 2.85157 3.17477 3.18830 3.49236 3.67674 3.71696 3.92209 4.20786 4.31981 4.40886 4.50077 4.64312 4.71058 4.75514 4.85497 4.95670 4.97257 4.98975 5.03368 5.07323 5.25447 5.47465 5.49451 5.52495 5.72577 5.77223 6.04277 6.25295 6.41307 6.71484 6.85295 6.91757 7.46470 8.95553 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.030430 B = 0.003859 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.914456 B = 7254.959978 C = 7395.715417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.219 3.781 3 H -0.026 1.026 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.268 1.268 12 N -0.545 5.545 13 C 0.046 3.954 14 C 0.130 3.870 15 C 0.058 3.942 16 C -0.070 4.070 17 N -0.352 5.352 18 C 0.048 3.952 19 C -0.117 4.117 20 C -0.108 4.108 21 C 0.090 3.910 22 F -0.134 7.134 23 C 0.165 3.835 24 N -0.518 5.518 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.221 0.779 35 H 0.212 0.788 36 H 0.211 0.789 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.442 -5.412 23.390 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.113 3.887 3 H -0.008 1.008 4 C -0.558 4.558 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.192 1.192 12 N -0.270 5.270 13 C -0.102 4.102 14 C 0.001 3.999 15 C -0.075 4.075 16 C -0.202 4.202 17 N -0.024 5.024 18 C -0.073 4.073 19 C -0.137 4.137 20 C -0.132 4.132 21 C 0.068 3.932 22 F -0.113 7.113 23 C -0.080 4.080 24 N -0.239 5.239 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.237 0.763 35 H 0.229 0.771 36 H 0.228 0.772 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.429 -5.976 22.860 25.087 hybrid contribution 0.429 0.689 -1.135 1.395 sum 8.858 -5.287 21.726 24.050 Atomic orbital electron populations 1.21683 0.97790 0.98786 0.99702 1.19044 0.92301 0.90582 0.86798 1.00818 1.21399 1.31201 1.12205 0.90960 0.92564 1.25698 0.95357 0.95756 1.01815 1.70014 1.37679 1.24154 1.24086 0.85519 0.78788 0.78204 0.78879 1.20541 1.20574 1.19228 1.61949 1.10756 1.52929 1.01415 1.22144 0.87438 0.99351 1.01275 1.20345 1.01013 0.92626 0.85897 1.20859 0.92801 0.96136 0.97703 1.22870 1.04270 0.99689 0.93360 1.42828 1.16151 1.22822 1.20642 1.22688 0.97546 1.00099 0.86929 1.21236 0.96948 0.94167 1.01336 1.21608 0.94001 1.02085 0.95485 1.16671 0.86321 0.92748 0.97491 1.91497 1.47305 1.77793 1.94675 1.21010 0.88677 0.99993 0.98333 1.70572 1.31757 1.11721 1.09844 0.91753 0.95957 0.95248 0.92868 0.96116 0.91646 0.92695 0.92486 0.91004 0.76272 0.77129 0.77180 0.79717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.46 8.76 71.98 0.63 -5.83 16 2 C 0.22 11.76 2.06 44.17 0.09 11.85 16 3 H -0.03 -1.47 8.14 -2.38 -0.02 -1.49 16 4 C -0.52 -29.75 7.93 25.60 0.20 -29.55 16 5 H 0.06 3.23 6.39 -2.91 -0.02 3.21 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -54.12 11.32 21.45 0.24 -53.88 16 8 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.55 -25.35 4.61 -906.04 -4.18 -29.53 16 13 C 0.05 1.86 9.04 127.69 1.15 3.02 16 14 C 0.13 5.20 5.31 85.56 0.45 5.65 16 15 C 0.06 2.09 5.82 41.59 0.24 2.33 16 16 C -0.07 -1.85 10.48 83.20 0.87 -0.98 16 17 N -0.35 -8.42 2.95 -351.96 -1.04 -9.46 16 18 C 0.05 0.57 10.95 83.19 0.91 1.48 16 19 C -0.12 -0.94 9.98 22.05 0.22 -0.72 16 20 C -0.11 -1.52 10.04 22.34 0.22 -1.30 16 21 C 0.09 2.36 7.34 22.50 0.17 2.52 16 22 F -0.13 -4.10 17.28 44.97 0.78 -3.33 16 23 C 0.17 5.31 7.80 134.17 1.05 6.36 16 24 N -0.52 -21.06 11.32 -182.27 -2.06 -23.12 16 25 H 0.06 3.67 6.07 -2.39 -0.01 3.66 16 26 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.03 1.39 6.20 -2.39 -0.01 1.38 16 28 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 2.28 6.30 -2.39 -0.02 2.27 16 31 H 0.05 2.41 6.23 -2.39 -0.01 2.40 16 32 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 33 H 0.07 3.11 5.83 -2.39 -0.01 3.09 16 34 H 0.22 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.21 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.21 -0.46 8.06 -2.91 -0.02 -0.48 16 37 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -77.93 309.28 3.52 -74.41 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: 1.09 Total: 2.00 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 6.66 Total: -4.02 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -7.04 Total: -115.99 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -77.93 3.52 -74.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611268580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.078 kcal (2) G-P(sol) polarization free energy of solvation -77.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds