Wall clock time and date at job start Thu Apr 9 2020 15:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99931 * 2 1 4 4 O 1.20831 * 120.00184 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00081 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46968 * 59.99969 * 5 3 2 7 7 C 1.52994 * 109.47123 * 299.99813 * 5 3 2 8 8 C 1.52996 * 109.47285 * 179.97438 * 5 3 2 9 9 H 1.09003 * 109.46961 * 59.80569 * 8 5 3 10 10 N 1.46501 * 109.47440 * 299.80557 * 8 5 3 11 11 C 1.36941 * 120.00054 * 154.76074 * 10 8 5 12 12 H 1.07995 * 120.00038 * 5.38301 * 11 10 8 13 13 C 1.38814 * 119.99932 * 185.37885 * 11 10 8 14 14 N 1.31617 * 119.99898 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99795 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46905 * 90.00504 * 15 13 11 17 17 H 1.48499 * 109.47192 * 209.99725 * 15 13 11 18 18 H 1.48492 * 109.47329 * 330.00355 * 15 13 11 19 19 C 1.50702 * 109.47219 * 179.80523 * 8 5 3 20 20 C 1.38235 * 119.99898 * 262.95641 * 19 8 5 21 21 C 1.38237 * 119.99920 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00006 * 359.95565 * 21 20 19 23 23 C 1.38236 * 119.99934 * 0.02562 * 22 21 20 24 24 C 1.38236 * 120.00324 * 0.06862 * 23 22 21 25 25 H 1.08998 * 109.47422 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47198 * 300.00459 * 1 2 3 27 27 H 1.09008 * 109.47260 * 59.99997 * 1 2 3 28 28 H 1.09007 * 109.47082 * 185.80402 * 6 5 3 29 29 H 1.08998 * 109.47266 * 305.79922 * 6 5 3 30 30 H 1.08995 * 109.47756 * 65.80312 * 6 5 3 31 31 H 1.08999 * 109.47452 * 299.99638 * 7 5 3 32 32 H 1.09000 * 109.47000 * 59.99979 * 7 5 3 33 33 H 1.09009 * 109.47181 * 180.02562 * 7 5 3 34 34 H 0.96999 * 119.99681 * 334.76374 * 10 8 5 35 35 H 0.96999 * 119.99952 * 179.97438 * 14 13 11 36 36 H 1.07994 * 120.00200 * 359.97438 * 20 19 8 37 37 H 1.07995 * 120.00061 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00346 * 179.71818 * 22 21 20 39 39 H 1.08004 * 119.99994 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.00328 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1128 0.5816 -1.2502 7 6 4.1138 0.5812 1.2483 8 6 4.0001 2.7421 -0.0011 9 1 3.6078 3.2373 0.8872 10 7 3.4797 3.4048 -1.1996 11 6 3.2732 4.7586 -1.1983 12 1 3.5745 5.3500 -0.3464 13 6 2.6766 5.3707 -2.2921 14 7 2.3090 4.6498 -3.3301 15 14 2.3955 7.2174 -2.2906 16 1 3.5809 7.8989 -2.8700 17 1 1.1948 7.5360 -3.1041 18 1 2.1876 7.6853 -0.8968 19 6 5.5050 2.8210 0.0031 20 6 6.1841 3.0052 1.1930 21 6 7.5646 3.0771 1.1970 22 6 8.2660 2.9638 0.0112 23 6 7.5869 2.7791 -1.1786 24 6 6.2063 2.7093 -1.1829 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 5.2012 0.5476 -1.2002 29 1 3.7198 -0.4337 -1.3037 30 1 3.8070 1.1367 -2.1369 31 1 3.7245 1.0751 2.1385 32 1 3.8048 -0.4641 1.2482 33 1 5.2024 0.6386 1.2481 34 1 3.2815 2.8847 -1.9939 35 1 1.8918 5.0775 -4.0943 36 1 5.6362 3.0930 2.1195 37 1 8.0951 3.2214 2.1265 38 1 9.3443 3.0244 0.0137 39 1 8.1349 2.6910 -2.1051 40 1 5.6758 2.5654 -2.1125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611404929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:44 Heat of formation + Delta-G solvation = -44.680744 kcal Electronic energy + Delta-G solvation = -22641.586823 eV Core-core repulsion = 19422.030979 eV Total energy + Delta-G solvation = -3219.555844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38824 -38.92540 -36.59080 -35.44923 -33.39770 -31.08206 -30.49190 -29.51280 -27.44261 -27.09913 -25.52342 -23.12980 -22.84258 -21.83659 -20.71219 -18.86310 -17.28155 -16.68511 -16.18536 -16.06426 -15.84321 -14.87773 -14.66918 -14.24248 -13.94391 -13.58310 -13.50914 -12.96015 -12.83719 -12.68239 -12.25647 -12.19243 -11.97987 -11.90854 -11.80427 -11.52001 -11.08197 -10.83926 -10.71188 -10.56315 -10.54988 -10.32112 -10.31031 -9.98942 -9.65447 -9.54318 -8.86966 -8.37837 -8.12076 -6.90423 -5.68719 -2.96540 1.87815 1.93928 2.87156 3.15268 3.49204 3.54365 3.56145 4.31500 4.64361 5.02968 5.10530 5.19403 5.36575 5.37720 5.39410 5.44569 5.46953 5.56000 5.63814 5.75768 5.82814 5.86727 5.95005 5.95988 6.06602 6.13840 6.20123 6.25355 6.36995 6.48432 6.54881 6.59817 6.71118 6.89629 6.95949 7.05086 7.34377 7.54896 7.79864 8.40063 8.48274 9.60400 10.11560 10.47465 11.54177 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.009759 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.423124 B = 2868.419288 C = 4881.530232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.457 3.543 4 O -0.459 6.459 5 C -0.050 4.050 6 C -0.144 4.144 7 C -0.140 4.140 8 C 0.227 3.773 9 H 0.065 0.935 10 N -0.703 5.703 11 C -0.224 4.224 12 H 0.068 0.932 13 C -0.010 4.010 14 N -0.933 5.933 15 Si 0.904 3.096 16 H -0.292 1.292 17 H -0.293 1.293 18 H -0.283 1.283 19 C -0.075 4.075 20 C -0.121 4.121 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.084 4.084 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.383 0.617 35 H 0.253 0.747 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.734 -11.299 7.955 14.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.297 3.703 4 O -0.341 6.341 5 C -0.052 4.052 6 C -0.201 4.201 7 C -0.197 4.197 8 C 0.116 3.884 9 H 0.083 0.917 10 N -0.343 5.343 11 C -0.355 4.355 12 H 0.086 0.914 13 C -0.206 4.206 14 N -0.582 5.582 15 Si 0.735 3.265 16 H -0.219 1.219 17 H -0.219 1.219 18 H -0.208 1.208 19 C -0.079 4.079 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.102 4.102 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.219 0.781 35 H 0.063 0.937 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.398 -10.770 7.965 14.442 hybrid contribution -0.489 1.118 -0.375 1.277 sum 4.909 -9.652 7.590 13.224 Atomic orbital electron populations 1.23129 0.77474 1.02685 1.02453 1.86467 1.22495 1.34505 1.85172 1.23616 0.91704 0.81251 0.73734 1.90810 1.66245 1.35528 1.41553 1.20756 0.86895 0.99029 0.98526 1.21960 1.01827 0.99973 0.96361 1.21885 1.02117 1.00239 0.95500 1.19037 0.87771 0.88133 0.93507 0.91740 1.42299 1.76060 1.05686 1.10227 1.19116 1.31726 0.83385 1.01288 0.91402 1.24669 1.01189 0.97606 0.97090 1.69648 1.47344 1.34154 1.07026 0.86232 0.77196 0.85853 0.77180 1.21918 1.21940 1.20847 1.21048 0.97933 0.96235 0.92663 1.21003 0.94008 1.01330 0.97668 1.20965 0.94330 1.01977 0.97571 1.20959 0.99024 1.02349 0.93033 1.21112 0.94753 1.01372 0.97513 1.21077 0.93175 0.97325 0.98610 0.88874 0.92465 0.91977 0.90840 0.92027 0.91154 0.92405 0.91694 0.90746 0.78134 0.93736 0.86855 0.87091 0.87204 0.86928 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -5.99 10.26 -39.26 -0.40 -6.39 16 3 C 0.46 8.73 6.39 36.00 0.23 8.96 16 4 O -0.46 -10.77 14.96 -18.75 -0.28 -11.05 16 5 C -0.05 -0.85 0.54 -155.67 -0.08 -0.93 16 6 C -0.14 -2.26 7.18 37.16 0.27 -1.99 16 7 C -0.14 -1.87 7.94 37.15 0.30 -1.58 16 8 C 0.23 4.55 1.39 -69.08 -0.10 4.45 16 9 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 10 N -0.70 -17.43 2.97 -54.55 -0.16 -17.59 16 11 C -0.22 -6.32 9.92 -15.06 -0.15 -6.47 16 12 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 13 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 14 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 15 Si 0.90 23.26 29.55 -169.99 -5.02 18.23 16 16 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 17 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 18 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 19 C -0.08 -1.36 3.81 -104.62 -0.40 -1.75 16 20 C -0.12 -1.91 8.46 -39.58 -0.33 -2.25 16 21 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 22 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 16 23 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 24 C -0.08 -1.50 7.28 -39.58 -0.29 -1.79 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.06 0.91 8.13 -51.92 -0.42 0.49 16 28 H 0.07 1.06 6.26 -51.92 -0.32 0.73 16 29 H 0.06 0.85 7.97 -51.93 -0.41 0.44 16 30 H 0.07 1.27 6.24 -51.93 -0.32 0.94 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.78 8.11 -51.93 -0.42 0.35 16 33 H 0.07 0.94 6.50 -51.92 -0.34 0.60 16 34 H 0.38 10.05 5.99 -40.82 -0.24 9.80 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.11 1.61 8.05 -52.49 -0.42 1.19 16 37 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.13 2.42 7.05 -52.49 -0.37 2.05 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -32.80 328.19 -6.75 -39.55 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.78 Total: 9.24 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.78 Total: -9.16 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.56 Total: -45.37 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.68 Total: -17.44 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.80 -6.75 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611404929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.128 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds