Wall clock time and date at job start Thu Apr 9 2020 15:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99931 * 2 1 4 4 O 1.20831 * 120.00184 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00081 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46968 * 59.99969 * 5 3 2 7 7 C 1.52994 * 109.47123 * 299.99813 * 5 3 2 8 8 C 1.52996 * 109.47285 * 179.97438 * 5 3 2 9 9 H 1.09003 * 109.46961 * 59.80569 * 8 5 3 10 10 N 1.46501 * 109.47440 * 299.80557 * 8 5 3 11 11 C 1.36941 * 120.00054 * 154.76074 * 10 8 5 12 12 H 1.07995 * 120.00038 * 5.38301 * 11 10 8 13 13 C 1.38814 * 119.99932 * 185.37885 * 11 10 8 14 14 N 1.31617 * 119.99898 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99795 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46905 * 90.00504 * 15 13 11 17 17 H 1.48499 * 109.47192 * 209.99725 * 15 13 11 18 18 H 1.48492 * 109.47329 * 330.00355 * 15 13 11 19 19 C 1.50702 * 109.47219 * 179.80523 * 8 5 3 20 20 C 1.38235 * 119.99898 * 262.95641 * 19 8 5 21 21 C 1.38237 * 119.99920 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00006 * 359.95565 * 21 20 19 23 23 C 1.38236 * 119.99934 * 0.02562 * 22 21 20 24 24 C 1.38236 * 120.00324 * 0.06862 * 23 22 21 25 25 H 1.08998 * 109.47422 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47198 * 300.00459 * 1 2 3 27 27 H 1.09008 * 109.47260 * 59.99997 * 1 2 3 28 28 H 1.09007 * 109.47082 * 185.80402 * 6 5 3 29 29 H 1.08998 * 109.47266 * 305.79922 * 6 5 3 30 30 H 1.08995 * 109.47756 * 65.80312 * 6 5 3 31 31 H 1.08999 * 109.47452 * 299.99638 * 7 5 3 32 32 H 1.09000 * 109.47000 * 59.99979 * 7 5 3 33 33 H 1.09009 * 109.47181 * 180.02562 * 7 5 3 34 34 H 0.96999 * 119.99681 * 334.76374 * 10 8 5 35 35 H 0.96999 * 119.99952 * 179.97438 * 14 13 11 36 36 H 1.07994 * 120.00200 * 359.97438 * 20 19 8 37 37 H 1.07995 * 120.00061 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00346 * 179.71818 * 22 21 20 39 39 H 1.08004 * 119.99994 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.00328 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1128 0.5816 -1.2502 7 6 4.1138 0.5812 1.2483 8 6 4.0001 2.7421 -0.0011 9 1 3.6078 3.2373 0.8872 10 7 3.4797 3.4048 -1.1996 11 6 3.2732 4.7586 -1.1983 12 1 3.5745 5.3500 -0.3464 13 6 2.6766 5.3707 -2.2921 14 7 2.3090 4.6498 -3.3301 15 14 2.3955 7.2174 -2.2906 16 1 3.5809 7.8989 -2.8700 17 1 1.1948 7.5360 -3.1041 18 1 2.1876 7.6853 -0.8968 19 6 5.5050 2.8210 0.0031 20 6 6.1841 3.0052 1.1930 21 6 7.5646 3.0771 1.1970 22 6 8.2660 2.9638 0.0112 23 6 7.5869 2.7791 -1.1786 24 6 6.2063 2.7093 -1.1829 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 5.2012 0.5476 -1.2002 29 1 3.7198 -0.4337 -1.3037 30 1 3.8070 1.1367 -2.1369 31 1 3.7245 1.0751 2.1385 32 1 3.8048 -0.4641 1.2482 33 1 5.2024 0.6386 1.2481 34 1 3.2815 2.8847 -1.9939 35 1 1.8918 5.0775 -4.0943 36 1 5.6362 3.0930 2.1195 37 1 8.0951 3.2214 2.1265 38 1 9.3443 3.0244 0.0137 39 1 8.1349 2.6910 -2.1051 40 1 5.6758 2.5654 -2.1125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611404929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:43 Heat of formation + Delta-G solvation = -63.774545 kcal Electronic energy + Delta-G solvation = -22642.414793 eV Core-core repulsion = 19422.030979 eV Total energy + Delta-G solvation = -3220.383813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.85023 -40.25786 -37.96050 -36.99072 -35.28952 -32.76704 -31.74202 -31.10864 -28.62781 -28.32595 -27.23981 -24.84993 -24.33636 -23.08952 -22.06648 -20.29350 -19.29470 -18.15064 -17.62997 -17.37310 -17.24808 -16.60708 -15.98255 -15.78544 -15.63136 -15.05197 -14.82927 -14.37846 -14.19499 -14.11115 -13.72201 -13.49235 -13.38215 -13.11453 -12.96945 -12.92141 -12.82647 -12.76896 -12.33793 -12.19554 -11.92271 -11.81548 -11.69690 -11.62495 -11.58239 -11.14484 -10.87818 -9.59905 -9.43304 -8.93455 -7.90783 -5.16325 0.63980 0.70759 1.36523 1.41997 1.44034 1.51719 1.83414 2.55950 3.06569 3.41710 3.63995 3.79988 3.87138 4.09607 4.20590 4.28638 4.31283 4.33540 4.35519 4.41827 4.48881 4.66508 4.70993 4.81000 4.82600 4.88130 4.94135 5.00814 5.04741 5.22652 5.29789 5.31056 5.38941 5.49388 5.52155 5.75859 5.80535 6.02526 6.29839 6.33234 6.92801 7.37674 8.09930 8.34732 9.32914 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.009759 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.423124 B = 2868.419288 C = 4881.530232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.458 3.542 4 O -0.514 6.514 5 C -0.048 4.048 6 C -0.134 4.134 7 C -0.131 4.131 8 C 0.227 3.773 9 H 0.042 0.958 10 N -0.711 5.711 11 C -0.217 4.217 12 H 0.064 0.936 13 C -0.074 4.074 14 N -0.968 5.968 15 Si 0.963 3.037 16 H -0.286 1.286 17 H -0.298 1.298 18 H -0.276 1.276 19 C -0.091 4.091 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.105 4.105 25 H 0.139 0.861 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.372 0.628 35 H 0.247 0.753 36 H 0.126 0.874 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 -12.395 9.854 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.301 3.699 4 O -0.401 6.401 5 C -0.050 4.050 6 C -0.192 4.192 7 C -0.188 4.188 8 C 0.118 3.882 9 H 0.060 0.940 10 N -0.350 5.350 11 C -0.349 4.349 12 H 0.082 0.918 13 C -0.265 4.265 14 N -0.619 5.619 15 Si 0.793 3.207 16 H -0.214 1.214 17 H -0.225 1.225 18 H -0.201 1.201 19 C -0.094 4.094 20 C -0.145 4.145 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.123 4.123 25 H 0.157 0.843 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.206 0.794 35 H 0.056 0.944 36 H 0.144 0.856 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.604 -11.909 9.917 17.262 hybrid contribution -1.119 1.360 -0.875 1.966 sum 6.485 -10.549 9.042 15.333 Atomic orbital electron populations 1.23443 0.75779 1.05436 1.01661 1.86454 1.24127 1.32778 1.84364 1.24119 0.92588 0.81190 0.72047 1.90786 1.67528 1.37381 1.44362 1.20788 0.85717 0.97566 1.00962 1.21887 1.02669 1.00286 0.94315 1.21863 1.02668 1.00907 0.93372 1.19122 0.89134 0.89515 0.90429 0.94040 1.42345 1.76534 1.04643 1.11482 1.19382 1.29839 0.85127 1.00537 0.91827 1.25376 1.02387 1.01500 0.97271 1.69799 1.49122 1.35435 1.07563 0.85288 0.76790 0.81461 0.77174 1.21363 1.22466 1.20128 1.20694 0.96141 0.98633 0.93892 1.21185 0.95134 1.00982 0.97174 1.21354 0.93559 1.00079 0.99107 1.21366 1.00766 1.00301 0.92179 1.21337 0.93733 1.00916 0.99215 1.20959 0.94433 0.99369 0.97539 0.84274 0.92335 0.93815 0.89454 0.89895 0.94356 0.92073 0.89575 0.89514 0.79380 0.94443 0.85575 0.83662 0.83837 0.85304 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.36 -11.43 10.26 -51.42 -0.53 -11.96 16 3 C 0.46 17.79 6.39 71.23 0.46 18.24 16 4 O -0.51 -25.19 14.96 21.95 0.33 -24.86 16 5 C -0.05 -1.64 0.54 -52.93 -0.03 -1.67 16 6 C -0.13 -4.21 7.18 71.98 0.52 -3.69 16 7 C -0.13 -3.24 7.94 71.98 0.57 -2.66 16 8 C 0.23 9.33 1.39 44.24 0.06 9.39 16 9 H 0.04 1.86 7.93 -2.39 -0.02 1.84 16 10 N -0.71 -36.87 2.97 -326.50 -0.97 -37.84 16 11 C -0.22 -12.66 9.92 84.03 0.83 -11.83 16 12 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 13 C -0.07 -4.45 5.50 84.86 0.47 -3.98 16 14 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 15 Si 0.96 49.15 29.55 68.60 2.03 51.18 16 16 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 17 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 18 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 19 C -0.09 -3.22 3.81 -19.86 -0.08 -3.30 16 20 C -0.13 -3.70 8.46 22.27 0.19 -3.51 16 21 C -0.12 -3.00 10.05 22.27 0.22 -2.78 16 22 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 23 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 24 C -0.10 -3.74 7.28 22.27 0.16 -3.57 16 25 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 27 H 0.04 1.31 8.13 -2.38 -0.02 1.29 16 28 H 0.09 2.47 6.26 -2.38 -0.01 2.45 16 29 H 0.08 2.20 7.97 -2.39 -0.02 2.18 16 30 H 0.04 1.44 6.24 -2.39 -0.01 1.43 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.79 8.11 -2.39 -0.02 1.77 16 33 H 0.09 1.96 6.50 -2.38 -0.02 1.94 16 34 H 0.37 20.72 5.99 -92.71 -0.56 20.17 16 35 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.13 3.30 8.05 -2.91 -0.02 3.28 16 37 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 40 H 0.10 4.00 7.05 -2.91 -0.02 3.98 16 Total: -1.00 -74.31 328.19 6.64 -67.67 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.48 Total: 31.14 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 5.02 Total: -13.97 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -0.69 Total: -99.20 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.20 Total: -36.82 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.03 Total: 51.18 kcal Total: -74.31 6.64 -67.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611404929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.894 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds