Wall clock time and date at job start Thu Apr 9 2020 15:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46959 * 2 1 4 4 H 1.09005 * 109.46953 * 174.08579 * 3 2 1 5 5 C 1.50703 * 109.47317 * 54.09153 * 3 2 1 6 6 H 1.08001 * 119.99726 * 240.00134 * 5 3 2 7 7 C 1.37871 * 120.00022 * 59.99583 * 5 3 2 8 8 N 1.31506 * 120.00402 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99765 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47183 * 60.00299 * 9 7 5 11 11 H 1.48506 * 109.47098 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47361 * 299.99925 * 9 7 5 13 13 N 1.46893 * 109.47184 * 294.08597 * 3 2 1 14 14 C 1.46896 * 111.00408 * 275.78304 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.21553 * 14 13 3 16 16 C 1.35127 * 125.69596 * 94.71438 * 15 14 13 17 17 N 1.36809 * 107.17922 * 179.87736 * 16 15 14 18 18 C 1.36576 * 132.55617 * 180.09894 * 17 16 15 19 19 C 1.34923 * 120.65188 * 180.35135 * 18 17 16 20 20 C 1.40478 * 120.32009 * 359.95988 * 19 18 17 21 21 C 1.36201 * 119.67164 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.35047 * 180.02562 * 21 20 19 23 23 C 1.37026 * 107.00330 * 0.38010 * 17 16 15 24 24 N 1.32566 * 108.04810 * 359.76084 * 23 17 16 25 25 H 1.08999 * 109.46901 * 178.56252 * 1 2 3 26 26 H 1.08994 * 109.46922 * 58.55822 * 1 2 3 27 27 H 1.09005 * 109.47002 * 298.56096 * 1 2 3 28 28 H 1.09004 * 109.46857 * 119.99490 * 2 1 3 29 29 H 1.08996 * 109.47213 * 240.00231 * 2 1 3 30 30 H 0.97005 * 120.00141 * 179.97438 * 8 7 5 31 31 H 1.00899 * 111.00024 * 39.74002 * 13 3 2 32 32 H 1.09006 * 109.46730 * 296.21053 * 14 13 3 33 33 H 1.08996 * 109.47238 * 56.20516 * 14 13 3 34 34 H 1.08003 * 126.41479 * 0.02562 * 16 15 14 35 35 H 1.08003 * 119.67427 * 0.33445 * 18 17 16 36 36 H 1.08000 * 119.83842 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.16728 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1059 5 6 1.4218 2.1939 1.1508 6 1 0.8149 3.0670 0.9618 7 6 1.6309 1.7667 2.4449 8 7 2.3702 0.7038 2.6751 9 14 0.8640 2.6977 3.8713 10 1 -0.6139 2.6947 3.7269 11 1 1.2383 2.0410 5.1495 12 1 1.3585 4.0980 3.8715 13 7 1.6703 2.0926 -1.2643 14 6 2.6510 1.7938 -2.3164 15 6 2.1915 2.3985 -3.6180 16 6 2.5618 3.6049 -4.1011 17 7 1.9265 3.7719 -5.3012 18 6 1.9320 4.7861 -6.2159 19 6 1.1933 4.7009 -7.3418 20 6 0.4067 3.5637 -7.5895 21 6 0.3917 2.5444 -6.6863 22 9 -0.3594 1.4441 -6.9110 23 6 1.1698 2.6495 -5.5136 24 7 1.3462 1.8342 -4.4833 25 1 -0.3633 -1.0273 -0.0258 26 1 -0.3633 0.5360 -0.8767 27 1 -0.3633 0.4913 0.9027 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 2.5177 0.4034 3.5856 31 1 0.7405 1.8248 -1.5502 32 1 3.6182 2.2149 -2.0416 33 1 2.7442 0.7138 -2.4302 34 1 3.2352 4.3052 -3.6294 35 1 2.5332 5.6651 -6.0362 36 1 1.2071 5.5109 -8.0561 37 1 -0.1833 3.4979 -8.4917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613043436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:52 Heat of formation + Delta-G solvation = 46.158051 kcal Electronic energy + Delta-G solvation = -20819.999440 eV Core-core repulsion = 17513.215107 eV Total energy + Delta-G solvation = -3306.784332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.09112 -42.83398 -37.73429 -36.30574 -33.45725 -32.71088 -31.06645 -29.72417 -28.83304 -26.71556 -24.79762 -23.25261 -23.07809 -22.91959 -20.45049 -19.22307 -18.38941 -17.66805 -16.47213 -16.39089 -16.11928 -15.79371 -15.14734 -14.78011 -14.66231 -14.30538 -13.91803 -13.56350 -12.93580 -12.74945 -12.55880 -12.34815 -12.20879 -11.91659 -11.74138 -11.42686 -10.86369 -10.83803 -10.71437 -10.45327 -10.13256 -9.88124 -9.81105 -9.46807 -8.95317 -8.74022 -8.29808 -7.92990 -7.17333 -5.92966 -3.94328 0.42704 1.05483 2.37272 2.80224 3.24809 3.37324 3.41461 3.44918 3.70453 4.04822 4.34723 4.46716 4.48666 4.69122 5.20163 5.27892 5.35231 5.38700 5.53453 5.64321 5.66244 5.77101 6.13017 6.22001 6.29535 6.44796 6.49599 6.64154 6.66409 6.91404 7.02896 7.32098 7.35958 7.58325 7.77025 7.85429 7.93039 8.32613 8.58297 8.66240 9.10669 9.68906 11.14130 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.029056 B = 0.003770 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.421034 B = 7426.218092 C = 7793.603581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.679 5.679 14 C 0.134 3.866 15 C 0.080 3.920 16 C -0.064 4.064 17 N -0.354 5.354 18 C 0.052 3.948 19 C -0.130 4.130 20 C -0.149 4.149 21 C 0.148 3.852 22 F -0.114 7.114 23 C 0.180 3.820 24 N -0.466 5.466 25 H 0.022 0.978 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.332 0.668 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.191 0.809 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 7.772 -19.896 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.310 5.310 14 C 0.004 3.996 15 C -0.053 4.053 16 C -0.195 4.195 17 N -0.027 5.027 18 C -0.069 4.069 19 C -0.151 4.151 20 C -0.174 4.174 21 C 0.126 3.874 22 F -0.092 7.092 23 C -0.064 4.064 24 N -0.186 5.186 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.208 0.792 35 H 0.185 0.815 36 H 0.175 0.825 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.005 7.478 -19.412 20.803 hybrid contribution -0.398 0.128 0.463 0.624 sum -0.393 7.606 -18.950 20.423 Atomic orbital electron populations 1.21555 0.97674 0.98034 1.01196 1.22099 0.95119 1.01041 1.00247 1.19226 0.96149 0.88767 0.85067 0.94752 1.21003 1.30496 1.11496 0.89695 0.92142 1.24894 0.95590 0.95173 0.98632 1.69874 1.39223 1.24109 1.20369 0.86636 0.79651 0.79973 0.81559 1.20419 1.21529 1.20395 1.60983 1.04152 1.63035 1.02875 1.20303 0.96952 0.97359 0.85035 1.21225 0.95462 0.91911 0.96690 1.22657 1.07468 1.02291 0.87128 1.42650 1.30669 1.13942 1.15469 1.21688 1.02478 0.92737 0.90020 1.20506 0.98070 0.99210 0.97320 1.20974 1.02861 0.93121 1.00428 1.16186 0.93484 0.85610 0.92110 1.91558 1.72911 1.50856 1.93894 1.20580 1.00770 0.86868 0.98202 1.70705 1.18186 1.28554 1.01151 0.95910 0.95093 0.91657 0.88975 0.96871 0.93090 0.84951 0.89945 0.94159 0.79176 0.81476 0.82507 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.39 37.16 0.35 -2.53 16 2 C -0.15 -3.52 5.50 -26.73 -0.15 -3.67 16 3 C 0.22 5.37 2.33 -68.87 -0.16 5.21 16 4 H 0.03 0.93 7.86 -51.93 -0.41 0.52 16 5 C -0.49 -13.28 7.35 -34.44 -0.25 -13.53 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.58 5.22 -17.83 -0.09 1.49 16 8 N -0.90 -25.35 11.39 55.43 0.63 -24.72 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -14.85 6.24 -109.22 -0.68 -15.54 16 14 C 0.13 2.52 6.01 -4.98 -0.03 2.49 16 15 C 0.08 1.39 6.53 -82.98 -0.54 0.85 16 16 C -0.06 -0.90 11.66 -16.44 -0.19 -1.09 16 17 N -0.35 -4.60 2.95 -62.60 -0.18 -4.79 16 18 C 0.05 0.45 10.95 -16.62 -0.18 0.26 16 19 C -0.13 -0.90 9.98 -39.92 -0.40 -1.30 16 20 C -0.15 -1.32 10.04 -39.47 -0.40 -1.72 16 21 C 0.15 1.94 7.34 -39.22 -0.29 1.65 16 22 F -0.11 -1.62 17.28 2.25 0.04 -1.58 16 23 C 0.18 2.82 7.80 -156.01 -1.22 1.60 16 24 N -0.47 -8.64 11.32 -8.97 -0.10 -8.74 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.03 0.66 6.42 -51.93 -0.33 0.33 16 27 H 0.06 1.59 7.05 -51.93 -0.37 1.23 16 28 H 0.09 2.46 6.25 -51.93 -0.32 2.14 16 29 H 0.01 0.29 7.24 -51.93 -0.38 -0.08 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 31 H 0.33 7.44 6.55 -39.29 -0.26 7.18 16 32 H 0.08 1.43 8.13 -51.93 -0.42 1.01 16 33 H 0.04 0.79 7.23 -51.93 -0.38 0.42 16 34 H 0.19 2.09 8.06 -52.48 -0.42 1.67 16 35 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.16 0.49 8.06 -52.49 -0.42 0.06 16 37 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -31.46 313.37 -8.67 -40.13 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.52 Total: 4.38 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.55 Total: -10.30 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.34 Total: -53.78 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.46 -8.67 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613043436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.287 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds