Wall clock time and date at job start Thu Apr 9 2020 15:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46959 * 2 1 4 4 H 1.09005 * 109.46953 * 174.08579 * 3 2 1 5 5 C 1.50703 * 109.47317 * 54.09153 * 3 2 1 6 6 H 1.08001 * 119.99726 * 240.00134 * 5 3 2 7 7 C 1.37871 * 120.00022 * 59.99583 * 5 3 2 8 8 N 1.31506 * 120.00402 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99765 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47183 * 60.00299 * 9 7 5 11 11 H 1.48506 * 109.47098 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47361 * 299.99925 * 9 7 5 13 13 N 1.46893 * 109.47184 * 294.08597 * 3 2 1 14 14 C 1.46896 * 111.00408 * 275.78304 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.21553 * 14 13 3 16 16 C 1.35127 * 125.69596 * 94.71438 * 15 14 13 17 17 N 1.36809 * 107.17922 * 179.87736 * 16 15 14 18 18 C 1.36576 * 132.55617 * 180.09894 * 17 16 15 19 19 C 1.34923 * 120.65188 * 180.35135 * 18 17 16 20 20 C 1.40478 * 120.32009 * 359.95988 * 19 18 17 21 21 C 1.36201 * 119.67164 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.35047 * 180.02562 * 21 20 19 23 23 C 1.37026 * 107.00330 * 0.38010 * 17 16 15 24 24 N 1.32566 * 108.04810 * 359.76084 * 23 17 16 25 25 H 1.08999 * 109.46901 * 178.56252 * 1 2 3 26 26 H 1.08994 * 109.46922 * 58.55822 * 1 2 3 27 27 H 1.09005 * 109.47002 * 298.56096 * 1 2 3 28 28 H 1.09004 * 109.46857 * 119.99490 * 2 1 3 29 29 H 1.08996 * 109.47213 * 240.00231 * 2 1 3 30 30 H 0.97005 * 120.00141 * 179.97438 * 8 7 5 31 31 H 1.00899 * 111.00024 * 39.74002 * 13 3 2 32 32 H 1.09006 * 109.46730 * 296.21053 * 14 13 3 33 33 H 1.08996 * 109.47238 * 56.20516 * 14 13 3 34 34 H 1.08003 * 126.41479 * 0.02562 * 16 15 14 35 35 H 1.08003 * 119.67427 * 0.33445 * 18 17 16 36 36 H 1.08000 * 119.83842 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.16728 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1059 5 6 1.4218 2.1939 1.1508 6 1 0.8149 3.0670 0.9618 7 6 1.6309 1.7667 2.4449 8 7 2.3702 0.7038 2.6751 9 14 0.8640 2.6977 3.8713 10 1 -0.6139 2.6947 3.7269 11 1 1.2383 2.0410 5.1495 12 1 1.3585 4.0980 3.8715 13 7 1.6703 2.0926 -1.2643 14 6 2.6510 1.7938 -2.3164 15 6 2.1915 2.3985 -3.6180 16 6 2.5618 3.6049 -4.1011 17 7 1.9265 3.7719 -5.3012 18 6 1.9320 4.7861 -6.2159 19 6 1.1933 4.7009 -7.3418 20 6 0.4067 3.5637 -7.5895 21 6 0.3917 2.5444 -6.6863 22 9 -0.3594 1.4441 -6.9110 23 6 1.1698 2.6495 -5.5136 24 7 1.3462 1.8342 -4.4833 25 1 -0.3633 -1.0273 -0.0258 26 1 -0.3633 0.5360 -0.8767 27 1 -0.3633 0.4913 0.9027 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 2.5177 0.4034 3.5856 31 1 0.7405 1.8248 -1.5502 32 1 3.6182 2.2149 -2.0416 33 1 2.7442 0.7138 -2.4302 34 1 3.2352 4.3052 -3.6294 35 1 2.5332 5.6651 -6.0362 36 1 1.2071 5.5109 -8.0561 37 1 -0.1833 3.4979 -8.4917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613043436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:52 Heat of formation + Delta-G solvation = 26.463243 kcal Electronic energy + Delta-G solvation = -20820.853471 eV Core-core repulsion = 17513.215107 eV Total energy + Delta-G solvation = -3307.638363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.01595 -43.83062 -38.85092 -37.93007 -34.72075 -34.22514 -32.80359 -30.97135 -29.85718 -28.49942 -26.37597 -25.07289 -24.08553 -23.89089 -21.67901 -21.15277 -19.30285 -18.59658 -18.08154 -17.46415 -17.30669 -16.78899 -16.62286 -16.36703 -16.02611 -15.47875 -15.21330 -14.83857 -14.64735 -14.36206 -13.96304 -13.72989 -13.41294 -13.27190 -12.92443 -12.77622 -12.72986 -12.56100 -12.45783 -11.90797 -11.75109 -11.72545 -11.43999 -11.21177 -10.97574 -10.41402 -9.80663 -8.96960 -8.84790 -8.03357 -6.11886 -0.37071 0.18222 1.45695 1.46749 1.47989 1.54262 1.75094 2.32358 2.48243 2.82277 3.17642 3.25414 3.59594 3.69200 3.88512 3.93404 4.24750 4.31135 4.45484 4.52739 4.57104 4.63646 4.73928 4.82109 4.89456 4.95999 4.98273 5.10664 5.33498 5.40810 5.46379 5.51974 5.64029 5.72843 5.83140 6.03028 6.30855 6.65081 6.73492 6.79818 6.98085 7.55267 9.02292 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.029056 B = 0.003770 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.421034 B = 7426.218092 C = 7793.603581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 C 0.221 3.779 4 H 0.008 0.992 5 C -0.501 4.501 6 H 0.051 0.949 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.676 5.676 14 C 0.142 3.858 15 C 0.044 3.956 16 C -0.057 4.057 17 N -0.354 5.354 18 C 0.048 3.952 19 C -0.117 4.117 20 C -0.106 4.106 21 C 0.089 3.911 22 F -0.133 7.133 23 C 0.167 3.833 24 N -0.525 5.525 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.019 0.981 30 H 0.260 0.740 31 H 0.327 0.673 32 H 0.092 0.908 33 H 0.022 0.978 34 H 0.221 0.779 35 H 0.211 0.789 36 H 0.211 0.789 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 10.782 -22.205 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.026 0.974 5 C -0.539 4.539 6 H 0.070 0.930 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.307 5.307 14 C 0.012 3.988 15 C -0.087 4.087 16 C -0.189 4.189 17 N -0.026 5.026 18 C -0.073 4.073 19 C -0.137 4.137 20 C -0.130 4.130 21 C 0.067 3.933 22 F -0.112 7.112 23 C -0.079 4.079 24 N -0.247 5.247 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.237 0.763 35 H 0.228 0.772 36 H 0.228 0.772 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.322 10.506 -21.737 24.145 hybrid contribution -0.290 -0.683 0.936 1.194 sum -0.611 9.823 -20.801 23.012 Atomic orbital electron populations 1.21428 0.96360 0.99146 1.00492 1.21962 0.96214 1.00431 0.99213 1.19000 0.94298 0.89210 0.86221 0.97392 1.21192 1.30530 1.11430 0.90785 0.93048 1.25583 0.95942 0.95901 1.00885 1.70003 1.40086 1.25190 1.20764 0.85691 0.78878 0.78894 0.78611 1.20013 1.21155 1.19812 1.60883 1.04530 1.62505 1.02805 1.20170 0.96569 0.96596 0.85477 1.20941 0.97522 0.93762 0.96502 1.22891 1.07189 1.01410 0.87416 1.42835 1.29795 1.14253 1.15698 1.22695 1.02712 0.92559 0.89289 1.21241 0.95743 0.99392 0.97327 1.21618 1.00488 0.91418 0.99511 1.16636 0.96015 0.87243 0.93362 1.91498 1.73604 1.52038 1.94030 1.20957 1.01241 0.87392 0.98264 1.70540 1.20264 1.30901 1.02992 0.93967 0.94325 0.93571 0.91533 0.96186 0.93134 0.85480 0.88995 0.95994 0.76292 0.77240 0.77180 0.79624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 9.39 71.98 0.68 -4.72 16 2 C -0.14 -6.95 5.50 30.60 0.17 -6.78 16 3 C 0.22 11.45 2.33 44.17 0.10 11.56 16 4 H 0.01 0.46 7.86 -2.38 -0.02 0.44 16 5 C -0.50 -27.86 7.35 25.60 0.19 -27.67 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 7 C 0.02 0.84 5.22 84.65 0.44 1.29 16 8 N -0.92 -53.18 11.39 21.44 0.24 -52.93 16 9 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.68 -30.74 6.24 -499.48 -3.12 -33.86 16 14 C 0.14 5.61 6.01 85.56 0.51 6.12 16 15 C 0.04 1.59 6.53 41.59 0.27 1.86 16 16 C -0.06 -1.56 11.66 83.20 0.97 -0.59 16 17 N -0.35 -8.52 2.95 -351.97 -1.04 -9.56 16 18 C 0.05 0.59 10.95 83.19 0.91 1.50 16 19 C -0.12 -0.94 9.98 22.05 0.22 -0.72 16 20 C -0.11 -1.45 10.04 22.34 0.22 -1.22 16 21 C 0.09 2.26 7.34 22.50 0.17 2.43 16 22 F -0.13 -3.88 17.28 44.97 0.78 -3.11 16 23 C 0.17 5.23 7.80 134.17 1.05 6.28 16 24 N -0.53 -20.45 11.32 -182.29 -2.06 -22.52 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.04 1.69 6.42 -2.39 -0.02 1.68 16 27 H 0.05 2.29 7.05 -2.38 -0.02 2.27 16 28 H 0.07 3.69 6.25 -2.38 -0.01 3.67 16 29 H 0.02 0.94 7.24 -2.39 -0.02 0.92 16 30 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 31 H 0.33 15.28 6.55 -89.69 -0.59 14.69 16 32 H 0.09 3.34 8.13 -2.38 -0.02 3.32 16 33 H 0.02 0.93 7.23 -2.39 -0.02 0.91 16 34 H 0.22 4.37 8.06 -2.91 -0.02 4.34 16 35 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 36 H 0.21 -0.45 8.06 -2.91 -0.02 -0.47 16 37 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -73.51 313.37 3.24 -70.27 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.51 Total: 16.07 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 5.90 Total: -10.68 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -5.97 Total: -118.86 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.51 3.24 -70.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613043436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.737 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds