Wall clock time and date at job start Thu Apr 9 2020 15:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47009 * 239.99555 * 3 2 1 5 5 H 1.48499 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47523 * 119.99483 * 3 2 1 7 7 C 1.38649 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00605 * 180.02562 * 7 2 1 9 9 O 1.34829 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00222 * 185.06121 * 9 7 2 11 11 C 1.38904 * 120.06744 * 354.39845 * 10 9 7 12 12 C 1.38075 * 119.93182 * 180.02562 * 11 10 9 13 13 C 1.38329 * 120.06751 * 0.02562 * 12 11 10 14 14 C 1.38272 * 120.13907 * 359.97438 * 13 12 11 15 15 C 1.38126 * 120.07110 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.03707 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47522 * 260.02469 * 16 15 14 18 18 O 1.46301 * 110.99868 * 180.02562 * 17 16 15 19 19 C 1.42905 * 113.99484 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.46665 * 179.97438 * 19 18 17 21 21 C 1.53774 * 113.61448 * 274.13184 * 20 19 18 22 22 C 1.53957 * 87.02251 * 220.05063 * 21 20 19 23 23 C 1.53778 * 87.10886 * 25.36174 * 22 21 20 24 24 H 0.96994 * 120.00237 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.03294 * 0.02562 * 11 10 9 26 26 H 1.08000 * 119.96529 * 179.72222 * 12 11 10 27 27 H 1.08006 * 119.92687 * 179.97438 * 13 12 11 28 28 H 1.08005 * 119.96944 * 180.02562 * 14 13 12 29 29 H 1.09003 * 109.46562 * 20.02214 * 16 15 14 30 30 H 1.08997 * 109.46883 * 140.01551 * 16 15 14 31 31 H 1.00905 * 110.99832 * 56.04357 * 17 16 15 32 32 H 1.09001 * 109.46896 * 299.99324 * 19 18 17 33 33 H 1.08991 * 109.47366 * 59.99665 * 19 18 17 34 34 H 1.08996 * 112.85261 * 45.33360 * 20 19 18 35 35 H 1.09000 * 113.61751 * 334.57108 * 21 20 19 36 36 H 1.08999 * 113.61672 * 105.46957 * 21 20 19 37 37 H 1.08991 * 113.53763 * 270.81178 * 22 21 20 38 38 H 1.08997 * 113.66884 * 139.92817 * 22 21 20 39 39 H 1.08998 * 113.61911 * 220.09039 * 23 22 21 40 40 H 1.09006 * 113.69378 * 89.19862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1078 11 6 3.4576 -3.4394 0.0940 12 6 4.2026 -4.5968 0.2028 13 6 3.5688 -5.8202 0.3248 14 6 2.1878 -5.8883 0.3388 15 6 1.4368 -4.7341 0.2304 16 6 -0.0682 -4.8093 0.2451 17 7 -0.5762 -4.7271 -1.1308 18 8 -2.0374 -4.7964 -1.1552 19 6 -2.6008 -4.7225 -2.4664 20 6 -4.1257 -4.8048 -2.3715 21 6 -4.6641 -6.2449 -2.3406 22 6 -5.7976 -5.7554 -3.2603 23 6 -4.8365 -4.6491 -3.7262 24 1 -0.4850 0.8400 -0.0004 25 1 3.9530 -2.4845 -0.0016 26 1 5.2814 -4.5473 0.1876 27 1 4.1538 -6.7241 0.4092 28 1 1.6957 -6.8450 0.4345 29 1 -0.3804 -5.7532 0.6919 30 1 -0.4676 -3.9808 0.8301 31 1 -0.1699 -5.4467 -1.7098 32 1 -2.3158 -3.7789 -2.9317 33 1 -2.2294 -5.5515 -3.0687 34 1 -4.5359 -4.1684 -1.5875 35 1 -4.0007 -6.9694 -2.8130 36 1 -5.0061 -6.5622 -1.3555 37 1 -6.6659 -5.3799 -2.7189 38 1 -6.0610 -6.4641 -4.0454 39 1 -5.3174 -3.6799 -3.8581 40 1 -4.2197 -4.9350 -4.5783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688463156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:01 Heat of formation + Delta-G solvation = 15.314817 kcal Electronic energy + Delta-G solvation = -20953.715929 eV Core-core repulsion = 17736.761688 eV Total energy + Delta-G solvation = -3216.954241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.14908 -38.91427 -36.50979 -36.02245 -33.14575 -32.21561 -29.68173 -28.81082 -27.48925 -25.64226 -25.33434 -23.95103 -22.50647 -21.54940 -20.46324 -19.40285 -17.92286 -17.07690 -16.44193 -15.80833 -15.36712 -14.99000 -14.68377 -14.37547 -14.28226 -14.03134 -13.66576 -13.31566 -13.14895 -12.56060 -12.51320 -12.39948 -12.09231 -11.80160 -11.64891 -11.47060 -11.26563 -10.85441 -10.75043 -10.65609 -10.53809 -10.42570 -10.36790 -10.27999 -9.79123 -9.30766 -8.80647 -8.22866 -7.95417 -7.21122 -6.39620 -3.98798 2.03225 2.38596 3.15542 3.16668 3.19178 3.23429 3.99358 4.53992 4.58543 4.62819 4.74680 4.83615 5.13685 5.26046 5.42820 5.43930 5.51806 5.59966 5.65553 5.68217 5.72382 5.79962 5.83814 5.87443 5.90672 5.92414 6.02789 6.19663 6.27812 6.30552 6.44830 6.54041 6.68371 6.89639 7.04910 7.16181 7.23070 7.36655 7.46044 7.81027 7.82904 8.02388 9.04025 9.74554 10.76549 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.004834 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.099622 B = 5790.785374 C = 7718.587624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.396 4.396 8 H 0.090 0.910 9 O -0.154 6.154 10 C 0.175 3.825 11 C -0.238 4.238 12 C -0.067 4.067 13 C -0.222 4.222 14 C -0.064 4.064 15 C -0.172 4.172 16 C 0.118 3.882 17 N -0.486 5.486 18 O -0.257 6.257 19 C 0.074 3.926 20 C -0.105 4.105 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.131 4.131 24 H 0.270 0.730 25 H 0.128 0.872 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.033 0.967 30 H 0.093 0.907 31 H 0.322 0.678 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 -10.054 -4.433 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.473 4.473 8 H 0.108 0.892 9 O -0.056 6.056 10 C 0.119 3.881 11 C -0.258 4.258 12 C -0.086 4.086 13 C -0.241 4.241 14 C -0.083 4.083 15 C -0.175 4.175 16 C -0.010 4.010 17 N -0.157 5.157 18 O -0.264 6.264 19 C -0.004 4.004 20 C -0.125 4.125 21 C -0.173 4.173 22 C -0.180 4.180 23 C -0.169 4.169 24 H 0.080 0.920 25 H 0.145 0.855 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.789 -9.126 -4.282 11.160 hybrid contribution 0.690 -0.171 -0.022 0.711 sum -4.099 -9.297 -4.303 11.034 Atomic orbital electron populations 1.70059 1.05840 1.27656 1.44899 1.25262 0.95778 0.98700 0.96494 0.85835 0.78754 0.80012 0.79134 1.19543 1.20300 1.19551 1.21294 0.91725 0.81033 1.53211 0.89249 1.84056 1.33751 1.11069 1.76700 1.19110 0.89902 0.87775 0.91318 1.21185 0.93757 0.99067 1.11745 1.20783 0.98460 0.92453 0.96875 1.20513 0.94088 0.96988 1.12490 1.20568 0.93801 0.95912 0.98057 1.18571 0.93113 0.91425 1.14372 1.20607 0.90875 1.00907 0.88643 1.66956 0.87613 1.48758 1.12327 1.90712 1.12635 1.96710 1.26341 1.22346 0.91901 1.00367 0.85823 1.22546 0.93418 0.97829 0.98728 1.22999 0.97777 0.96530 0.99995 1.22834 0.97135 0.98513 0.99495 1.22887 0.97942 0.99374 0.96710 0.92015 0.85470 0.87520 0.87664 0.87316 0.94836 0.88822 0.86329 0.92342 0.94133 0.88302 0.90329 0.91488 0.90221 0.91588 0.91140 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.03 13.67 55.48 0.76 -24.28 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.40 -11.05 9.49 30.88 0.29 -10.75 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.15 -4.36 9.00 0.05 0.00 -4.36 16 10 C 0.17 4.21 6.62 -39.11 -0.26 3.95 16 11 C -0.24 -5.18 9.17 -39.39 -0.36 -5.54 16 12 C -0.07 -1.23 10.04 -39.61 -0.40 -1.63 16 13 C -0.22 -3.82 10.04 -39.54 -0.40 -4.22 16 14 C -0.06 -1.15 9.66 -39.61 -0.38 -1.53 16 15 C -0.17 -3.61 5.41 -104.43 -0.56 -4.18 16 16 C 0.12 2.41 6.02 -4.98 -0.03 2.38 16 17 N -0.49 -9.78 7.32 -11.41 -0.08 -9.86 16 18 O -0.26 -4.96 11.28 -13.92 -0.16 -5.12 16 19 C 0.07 1.15 6.21 37.16 0.23 1.38 16 20 C -0.11 -1.37 4.00 -89.81 -0.36 -1.73 16 21 C -0.14 -1.49 7.65 -25.83 -0.20 -1.69 16 22 C -0.14 -1.34 8.09 -25.83 -0.21 -1.55 16 23 C -0.13 -1.38 7.65 -25.92 -0.20 -1.58 16 24 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 26 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 27 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 28 H 0.11 1.62 8.04 -52.48 -0.42 1.20 16 29 H 0.03 0.60 8.00 -51.93 -0.42 0.18 16 30 H 0.09 2.20 7.86 -51.93 -0.41 1.80 16 31 H 0.32 5.65 8.91 -39.29 -0.35 5.30 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.56 7.87 -51.93 -0.41 0.15 16 34 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.81 8.10 -51.93 -0.42 0.38 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -30.81 338.50 -8.25 -39.06 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.92 Total: 9.53 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -2.93 Total: -25.61 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.68 Total: -34.14 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.16 Total: -9.47 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.81 -8.25 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688463156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.375 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds