Wall clock time and date at job start Thu Apr 9 2020 15:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46848 * 2 1 4 4 H 1.09004 * 109.82408 * 305.88414 * 3 2 1 5 5 C 1.54388 * 109.82924 * 184.99983 * 3 2 1 6 6 C 1.55303 * 102.25051 * 219.03713 * 5 3 2 7 7 H 1.08999 * 111.13067 * 276.16748 * 6 5 3 8 8 N 1.46505 * 111.12082 * 152.05122 * 6 5 3 9 9 C 1.39675 * 119.99947 * 155.00089 * 8 6 5 10 10 C 1.39009 * 120.03610 * 0.02562 * 9 8 6 11 11 C 1.38150 * 120.05933 * 180.02562 * 10 9 8 12 12 C 1.38176 * 120.14183 * 0.27695 * 11 10 9 13 13 C 1.38918 * 120.08067 * 359.48829 * 12 11 10 14 14 O 1.35748 * 120.03370 * 180.25058 * 13 12 11 15 15 C 1.34828 * 117.00069 * 174.69461 * 14 13 12 16 16 H 1.08004 * 119.99850 * 5.06316 * 15 14 13 17 17 C 1.38647 * 120.00143 * 185.06131 * 15 14 13 18 18 N 1.31559 * 120.00251 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00083 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47101 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47051 * 119.99924 * 19 17 15 22 22 H 1.48499 * 109.47373 * 240.00110 * 19 17 15 23 23 C 1.38749 * 120.04299 * 180.02562 * 9 8 6 24 24 C 1.54941 * 100.94478 * 34.13615 * 6 5 3 25 25 O 1.43239 * 109.90819 * 66.82243 * 3 2 1 26 26 H 1.08999 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47119 * 299.99746 * 1 2 3 28 28 H 1.08996 * 109.46858 * 60.00100 * 1 2 3 29 29 H 1.08994 * 109.47063 * 239.99954 * 2 1 3 30 30 H 1.08996 * 109.46858 * 119.99899 * 2 1 3 31 31 H 1.08998 * 110.84464 * 100.84966 * 5 3 2 32 32 H 1.08996 * 110.84716 * 337.22899 * 5 3 2 33 33 H 0.96997 * 120.00256 * 334.99897 * 8 6 5 34 34 H 1.07999 * 119.97398 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.93185 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.96137 * 179.74518 * 12 11 10 37 37 H 0.96992 * 120.00570 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.06449 * 359.96099 * 23 9 8 39 39 H 1.08996 * 110.31419 * 82.46473 * 24 6 5 40 40 H 1.09001 * 110.31002 * 204.63987 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9913 -0.8308 5 6 3.5786 1.4540 -0.1266 6 6 3.9796 2.6070 0.8335 7 1 3.9080 3.5747 0.3369 8 7 5.3223 2.3959 1.3802 9 6 6.0783 3.4865 1.8160 10 6 5.5572 4.7725 1.7319 11 6 6.3047 5.8516 2.1623 12 6 7.5741 5.6571 2.6722 13 6 8.0988 4.3740 2.7636 14 8 9.3440 4.1836 3.2694 15 6 9.7500 2.9083 3.4325 16 1 9.1274 2.0953 3.0892 17 6 10.9667 2.6405 4.0410 18 7 11.7249 3.6307 4.4597 19 14 11.5288 0.8735 4.2676 20 1 10.5026 -0.0470 3.7157 21 1 12.8139 0.6674 3.5526 22 1 11.7171 0.5956 5.7142 23 6 7.3503 3.2877 2.3335 24 6 2.8992 2.4621 1.9346 25 8 1.7028 2.0790 1.2381 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8820 1.6777 -1.1493 32 1 4.0024 0.5067 0.2066 33 1 5.6863 1.4988 1.4395 34 1 4.5671 4.9282 1.3296 35 1 5.8980 6.8499 2.0956 36 1 8.1576 6.5032 3.0041 37 1 12.5762 3.4435 4.8850 38 1 7.7572 2.2895 2.4005 39 1 3.1863 1.6887 2.6469 40 1 2.7509 3.4129 2.4466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688511189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:16 Heat of formation + Delta-G solvation = -52.439922 kcal Electronic energy + Delta-G solvation = -20974.984495 eV Core-core repulsion = 17755.092188 eV Total energy + Delta-G solvation = -3219.892307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02934 -38.91071 -36.92139 -34.69739 -33.68409 -32.22422 -31.17090 -29.10266 -28.28149 -27.22079 -25.26957 -23.83063 -22.24943 -21.59759 -21.07928 -20.07820 -17.89217 -17.72264 -16.82382 -16.22061 -15.51760 -15.12806 -14.84716 -14.44754 -14.31718 -13.87905 -13.75493 -13.65319 -13.55361 -13.06778 -12.89368 -12.57464 -12.38673 -12.05291 -11.86912 -11.64511 -11.51321 -11.27945 -11.13763 -10.93332 -10.84016 -10.76701 -10.53780 -10.38953 -9.69249 -9.42160 -9.38862 -8.77646 -7.39167 -6.83324 -6.42363 -4.01692 2.35248 2.52112 3.12889 3.13939 3.19175 3.40080 3.92116 3.98433 4.29081 4.49713 4.64572 4.76229 4.90219 4.92539 4.96818 5.13908 5.18118 5.29525 5.35461 5.52100 5.54594 5.66032 5.68348 5.70570 5.75356 5.79192 5.95702 6.02085 6.05270 6.25674 6.33620 6.59154 6.62034 6.86563 7.00306 7.13900 7.36697 7.46214 7.62711 7.95432 8.03428 8.13572 9.03781 9.76021 10.76043 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021916 B = 0.003714 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.303884 B = 7537.424998 C = 8587.248999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.082 3.918 4 H 0.081 0.919 5 C -0.161 4.161 6 C 0.127 3.873 7 H 0.099 0.901 8 N -0.741 5.741 9 C 0.246 3.754 10 C -0.280 4.280 11 C -0.039 4.039 12 C -0.234 4.234 13 C 0.189 3.811 14 O -0.178 6.178 15 C -0.389 4.389 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.299 4.299 24 C 0.034 3.966 25 O -0.376 6.376 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.397 0.603 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.269 0.731 38 H 0.125 0.875 39 H 0.062 0.938 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 -5.527 -8.637 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.024 3.976 4 H 0.099 0.901 5 C -0.199 4.199 6 C 0.020 3.980 7 H 0.117 0.883 8 N -0.373 5.373 9 C 0.146 3.854 10 C -0.303 4.303 11 C -0.058 4.058 12 C -0.255 4.255 13 C 0.135 3.865 14 O -0.081 6.081 15 C -0.465 4.465 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.323 4.323 24 C -0.045 4.045 25 O -0.295 6.295 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.231 0.769 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.302 -5.233 -8.436 19.947 hybrid contribution 0.657 -1.373 0.077 1.524 sum -16.645 -6.606 -8.359 19.763 Atomic orbital electron populations 1.21700 0.95295 1.01332 1.02262 1.21912 0.96963 0.95882 1.02405 1.22703 0.93559 0.93652 0.87716 0.90138 1.23427 0.95553 0.99683 1.01255 1.22405 0.83312 0.99284 0.93027 0.88343 1.44339 1.14819 1.07346 1.70817 1.17463 0.89769 0.86858 0.91323 1.20105 1.01741 0.91323 1.17126 1.20384 0.93002 0.97247 0.95202 1.20064 0.97396 0.94991 1.13053 1.19069 0.84928 0.92761 0.89769 1.83989 1.24033 1.29681 1.70368 1.21342 1.04162 0.81035 1.39998 0.89141 1.25275 0.95432 0.99798 0.96070 1.70046 1.11562 1.31188 1.37107 0.85665 0.78904 0.80524 0.78401 1.19244 1.20196 1.20171 1.20498 0.95768 0.99952 1.16092 1.23946 0.84519 1.00767 0.95230 1.88441 1.29610 1.78266 1.33153 0.92989 0.91990 0.92905 0.91118 0.91495 0.89488 0.89993 0.76882 0.87785 0.87118 0.86846 0.92132 0.85761 0.91934 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.83 37.16 0.37 -0.82 16 2 C -0.13 -1.11 5.51 -26.73 -0.15 -1.25 16 3 C 0.08 0.77 3.51 -26.01 -0.09 0.68 16 4 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.16 -1.50 6.20 -24.78 -0.15 -1.65 16 6 C 0.13 1.49 3.21 -65.68 -0.21 1.28 16 7 H 0.10 1.19 6.34 -51.93 -0.33 0.86 16 8 N -0.74 -10.58 5.38 -50.02 -0.27 -10.85 16 9 C 0.25 4.49 6.65 -83.81 -0.56 3.93 16 10 C -0.28 -4.89 9.23 -39.33 -0.36 -5.25 16 11 C -0.04 -0.72 10.03 -39.64 -0.40 -1.11 16 12 C -0.23 -5.07 9.99 -39.35 -0.39 -5.46 16 13 C 0.19 4.64 6.64 -39.14 -0.26 4.38 16 14 O -0.18 -5.12 9.76 0.06 0.00 -5.12 16 15 C -0.39 -10.93 9.49 30.88 0.29 -10.63 16 16 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 17 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.50 13.67 55.48 0.76 -24.75 16 19 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 23 C -0.30 -6.52 9.01 -39.20 -0.35 -6.87 16 24 C 0.03 0.40 7.48 38.18 0.29 0.69 16 25 O -0.38 -4.49 10.66 -35.23 -0.38 -4.86 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16 33 H 0.40 5.26 8.58 -40.82 -0.35 4.91 16 34 H 0.10 1.56 6.17 -52.49 -0.32 1.24 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 38 H 0.12 2.72 5.64 -52.49 -0.30 2.43 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -30.85 329.69 -7.77 -38.61 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.74 Total: 7.58 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.08 Total: -21.14 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.49 Total: -35.60 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.37 Total: -9.98 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.85 -7.77 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688511189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.827 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds