Wall clock time and date at job start Thu Apr 9 2020 15:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46848 * 2 1 4 4 H 1.09004 * 109.82408 * 305.88414 * 3 2 1 5 5 C 1.54388 * 109.82924 * 184.99983 * 3 2 1 6 6 C 1.55303 * 102.25051 * 219.03713 * 5 3 2 7 7 H 1.08999 * 111.13067 * 276.16748 * 6 5 3 8 8 N 1.46505 * 111.12082 * 152.05122 * 6 5 3 9 9 C 1.39675 * 119.99947 * 155.00089 * 8 6 5 10 10 C 1.39009 * 120.03610 * 0.02562 * 9 8 6 11 11 C 1.38150 * 120.05933 * 180.02562 * 10 9 8 12 12 C 1.38176 * 120.14183 * 0.27695 * 11 10 9 13 13 C 1.38918 * 120.08067 * 359.48829 * 12 11 10 14 14 O 1.35748 * 120.03370 * 180.25058 * 13 12 11 15 15 C 1.34828 * 117.00069 * 174.69461 * 14 13 12 16 16 H 1.08004 * 119.99850 * 5.06316 * 15 14 13 17 17 C 1.38647 * 120.00143 * 185.06131 * 15 14 13 18 18 N 1.31559 * 120.00251 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00083 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47101 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47051 * 119.99924 * 19 17 15 22 22 H 1.48499 * 109.47373 * 240.00110 * 19 17 15 23 23 C 1.38749 * 120.04299 * 180.02562 * 9 8 6 24 24 C 1.54941 * 100.94478 * 34.13615 * 6 5 3 25 25 O 1.43239 * 109.90819 * 66.82243 * 3 2 1 26 26 H 1.08999 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47119 * 299.99746 * 1 2 3 28 28 H 1.08996 * 109.46858 * 60.00100 * 1 2 3 29 29 H 1.08994 * 109.47063 * 239.99954 * 2 1 3 30 30 H 1.08996 * 109.46858 * 119.99899 * 2 1 3 31 31 H 1.08998 * 110.84464 * 100.84966 * 5 3 2 32 32 H 1.08996 * 110.84716 * 337.22899 * 5 3 2 33 33 H 0.96997 * 120.00256 * 334.99897 * 8 6 5 34 34 H 1.07999 * 119.97398 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.93185 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.96137 * 179.74518 * 12 11 10 37 37 H 0.96992 * 120.00570 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.06449 * 359.96099 * 23 9 8 39 39 H 1.08996 * 110.31419 * 82.46473 * 24 6 5 40 40 H 1.09001 * 110.31002 * 204.63987 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9913 -0.8308 5 6 3.5786 1.4540 -0.1266 6 6 3.9796 2.6070 0.8335 7 1 3.9080 3.5747 0.3369 8 7 5.3223 2.3959 1.3802 9 6 6.0783 3.4865 1.8160 10 6 5.5572 4.7725 1.7319 11 6 6.3047 5.8516 2.1623 12 6 7.5741 5.6571 2.6722 13 6 8.0988 4.3740 2.7636 14 8 9.3440 4.1836 3.2694 15 6 9.7500 2.9083 3.4325 16 1 9.1274 2.0953 3.0892 17 6 10.9667 2.6405 4.0410 18 7 11.7249 3.6307 4.4597 19 14 11.5288 0.8735 4.2676 20 1 10.5026 -0.0470 3.7157 21 1 12.8139 0.6674 3.5526 22 1 11.7171 0.5956 5.7142 23 6 7.3503 3.2877 2.3335 24 6 2.8992 2.4621 1.9346 25 8 1.7028 2.0790 1.2381 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8820 1.6777 -1.1493 32 1 4.0024 0.5067 0.2066 33 1 5.6863 1.4988 1.4395 34 1 4.5671 4.9282 1.3296 35 1 5.8980 6.8499 2.0956 36 1 8.1576 6.5032 3.0041 37 1 12.5762 3.4435 4.8850 38 1 7.7572 2.2895 2.4005 39 1 3.1863 1.6887 2.6469 40 1 2.7509 3.4129 2.4466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688511189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:15 Heat of formation + Delta-G solvation = -72.231873 kcal Electronic energy + Delta-G solvation = -20975.842739 eV Core-core repulsion = 17755.092188 eV Total energy + Delta-G solvation = -3220.750551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08950 -40.45913 -38.54262 -36.02513 -34.41651 -34.21229 -32.32650 -30.57807 -29.51979 -28.40752 -27.24040 -24.59571 -23.63781 -23.02035 -22.01552 -21.29833 -19.68791 -19.19360 -17.94443 -17.31437 -16.89557 -16.72476 -16.04691 -15.83070 -15.63324 -15.48605 -15.11699 -14.74033 -14.48856 -14.43857 -14.10147 -13.84153 -13.71182 -13.49133 -13.06044 -12.83462 -12.59255 -12.47532 -12.44548 -12.23770 -12.09822 -11.95957 -11.78264 -11.54550 -11.28468 -10.97333 -10.64038 -10.45612 -9.12192 -8.45466 -8.28742 -6.13775 0.75156 0.89002 1.34565 1.43945 1.52840 2.18089 2.30028 2.88340 3.01087 3.24510 3.46423 3.59459 3.77345 3.88496 4.03636 4.14433 4.22305 4.25413 4.41227 4.49411 4.57733 4.60161 4.68108 4.72770 4.83239 4.86826 4.94821 5.02081 5.09882 5.11717 5.12938 5.16300 5.32036 5.42723 5.44145 5.74652 5.79933 5.99285 6.05921 6.10844 6.54916 6.79857 6.99958 7.83201 8.78444 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021916 B = 0.003714 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.303884 B = 7537.424998 C = 8587.248999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.078 3.922 4 H 0.094 0.906 5 C -0.152 4.152 6 C 0.123 3.877 7 H 0.104 0.896 8 N -0.730 5.730 9 C 0.256 3.744 10 C -0.264 4.264 11 C -0.026 4.026 12 C -0.260 4.260 13 C 0.152 3.848 14 O -0.232 6.232 15 C -0.409 4.409 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.019 2.981 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.313 4.313 24 C 0.037 3.963 25 O -0.390 6.390 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.402 0.598 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.272 0.728 38 H 0.115 0.885 39 H 0.055 0.945 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.104 -6.818 -10.456 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.021 3.979 4 H 0.111 0.889 5 C -0.190 4.190 6 C 0.017 3.983 7 H 0.122 0.878 8 N -0.361 5.361 9 C 0.152 3.848 10 C -0.287 4.287 11 C -0.044 4.044 12 C -0.281 4.281 13 C 0.101 3.899 14 O -0.139 6.139 15 C -0.485 4.485 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.838 3.162 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.336 4.336 24 C -0.042 4.042 25 O -0.309 6.309 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.238 0.762 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.073 0.927 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.143 -6.542 -10.297 23.549 hybrid contribution 1.152 -0.889 0.493 1.536 sum -18.991 -7.431 -9.803 22.627 Atomic orbital electron populations 1.21693 0.95163 1.01833 1.01857 1.21922 0.97082 0.95223 1.02837 1.22892 0.93651 0.94335 0.87067 0.88859 1.23413 0.95378 0.98806 1.01409 1.22586 0.81476 1.00738 0.93506 0.87777 1.44419 1.15406 1.06635 1.69604 1.17513 0.88718 0.88583 0.89941 1.20581 1.02824 0.90447 1.14800 1.20830 0.91176 0.99607 0.92820 1.20287 0.99166 0.93859 1.14742 1.19639 0.84576 0.94799 0.90878 1.83952 1.26616 1.30143 1.73140 1.21830 1.04846 0.81493 1.40378 0.88238 1.26585 0.95177 1.04980 0.95433 1.70193 1.12466 1.34060 1.39392 0.84530 0.78713 0.74322 0.78622 1.17483 1.19334 1.19426 1.20503 0.97261 0.98807 1.17065 1.23844 0.84692 1.00477 0.95156 1.88443 1.29612 1.78622 1.34193 0.92117 0.93589 0.92080 0.89339 0.92400 0.87889 0.89504 0.76224 0.84076 0.83023 0.87551 0.91903 0.86739 0.92706 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.83 71.98 0.71 -1.29 16 2 C -0.13 -1.81 5.51 30.59 0.17 -1.64 16 3 C 0.08 1.21 3.51 31.06 0.11 1.32 16 4 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 5 C -0.15 -2.27 6.20 31.86 0.20 -2.07 16 6 C 0.12 2.45 3.21 46.44 0.15 2.60 16 7 H 0.10 2.02 6.34 -2.39 -0.02 2.00 16 8 N -0.73 -18.89 5.38 -312.16 -1.68 -20.57 16 9 C 0.26 8.82 6.65 38.20 0.25 9.07 16 10 C -0.26 -8.30 9.23 22.43 0.21 -8.09 16 11 C -0.03 -0.87 10.03 22.23 0.22 -0.65 16 12 C -0.26 -11.40 9.99 22.42 0.22 -11.18 16 13 C 0.15 7.77 6.64 22.56 0.15 7.92 16 14 O -0.23 -14.27 9.76 -22.71 -0.22 -14.49 16 15 C -0.41 -24.15 9.49 67.92 0.64 -23.51 16 16 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 17 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 18 N -0.92 -57.38 13.67 21.61 0.30 -57.08 16 19 Si 1.02 43.22 29.55 68.60 2.03 45.25 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 C -0.31 -13.77 9.01 22.52 0.20 -13.56 16 24 C 0.04 0.78 7.48 72.65 0.54 1.32 16 25 O -0.39 -8.26 10.66 -148.98 -1.59 -9.84 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.04 0.76 7.90 -2.39 -0.02 0.74 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.25 7.70 -2.39 -0.02 1.23 16 33 H 0.40 9.75 8.58 -92.71 -0.80 8.95 16 34 H 0.14 3.46 6.17 -2.91 -0.02 3.44 16 35 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.11 5.16 5.64 -2.91 -0.02 5.14 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -71.56 329.69 3.33 -68.23 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.25 Total: 29.22 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 4.25 Total: -40.72 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -1.38 Total: -77.65 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -1.81 Total: -24.33 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -71.56 3.33 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688511189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.998 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds