Wall clock time and date at job start Thu Apr 9 2020 15:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46687 * 2 1 4 4 H 1.08998 * 110.33557 * 304.20132 * 3 2 1 5 5 C 1.54474 * 110.46614 * 181.88732 * 3 2 1 6 6 C 1.54514 * 104.06694 * 217.14325 * 5 3 2 7 7 H 1.08995 * 110.62757 * 118.70057 * 6 5 3 8 8 N 1.46497 * 110.51189 * 241.35573 * 6 5 3 9 9 C 1.39775 * 120.00159 * 201.09157 * 8 6 5 10 10 C 1.38955 * 120.00999 * 180.02562 * 9 8 6 11 11 C 1.38014 * 119.99629 * 180.02562 * 10 9 8 12 12 C 1.38894 * 120.00320 * 359.97438 * 11 10 9 13 13 O 1.35807 * 119.99106 * 180.02562 * 12 11 10 14 14 C 1.34804 * 116.99726 * 5.54752 * 13 12 11 15 15 H 1.07997 * 120.00514 * 354.93102 * 14 13 12 16 16 C 1.38625 * 119.99980 * 174.94520 * 14 13 12 17 17 N 1.31586 * 119.99775 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00106 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46918 * 269.99215 * 18 16 14 20 20 H 1.48495 * 109.47261 * 29.99504 * 18 16 14 21 21 H 1.48499 * 109.47144 * 149.99554 * 18 16 14 22 22 C 1.38895 * 120.01729 * 0.29228 * 12 11 10 23 23 C 1.38014 * 120.00307 * 359.45841 * 22 12 11 24 24 C 1.54478 * 104.05824 * 359.97438 * 6 5 3 25 25 O 1.44429 * 110.37288 * 66.44946 * 3 2 1 26 26 H 1.09006 * 109.46479 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47132 * 300.00108 * 1 2 3 28 28 H 1.09003 * 109.46814 * 60.00752 * 1 2 3 29 29 H 1.08995 * 109.47355 * 240.00388 * 2 1 3 30 30 H 1.09003 * 109.46814 * 119.99248 * 2 1 3 31 31 H 1.09002 * 110.51750 * 98.49679 * 5 3 2 32 32 H 1.09007 * 110.51416 * 335.78533 * 5 3 2 33 33 H 0.97009 * 120.00220 * 21.09579 * 8 6 5 34 34 H 1.07997 * 119.99935 * 359.97438 * 10 9 8 35 35 H 1.08001 * 119.99655 * 179.97438 * 11 10 9 36 36 H 0.96997 * 119.99737 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.00247 * 179.72525 * 22 12 11 38 38 H 1.08004 * 120.00594 * 180.27366 * 23 22 12 39 39 H 1.09004 * 110.36977 * 142.80713 * 24 6 5 40 40 H 1.09000 * 110.37558 * 265.03476 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6245 1.9911 -0.8453 5 6 3.5837 1.4697 -0.0477 6 6 3.9665 2.6609 0.8590 7 1 4.5674 2.3232 1.7033 8 7 4.6881 3.6790 0.0916 9 6 5.5005 4.6058 0.7509 10 6 6.1846 5.5719 0.0233 11 6 6.9871 6.4866 0.6745 12 6 7.1104 6.4419 2.0573 13 8 7.8997 7.3424 2.6979 14 6 8.4432 8.3222 1.9483 15 1 8.3107 8.3187 0.8765 16 6 9.1726 9.3340 2.5532 17 7 9.3339 9.3384 3.8591 18 14 9.9264 10.6912 1.5144 19 1 11.2950 10.2932 1.0975 20 1 9.0877 10.9164 0.3098 21 1 9.9958 11.9431 2.3102 22 6 6.4311 5.4729 2.7845 23 6 5.6244 4.5612 2.1342 24 6 2.6086 3.2128 1.3467 25 8 1.6975 2.0969 1.2412 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 3.9316 1.6384 -1.0668 32 1 3.9945 0.5410 0.3483 33 1 4.6022 3.7099 -0.8742 34 1 6.0890 5.6064 -1.0519 35 1 7.5191 7.2373 0.1089 36 1 9.8439 10.0466 4.2824 37 1 6.5306 5.4356 3.8592 38 1 5.0927 3.8105 2.7000 39 1 2.6836 3.5442 2.3824 40 1 2.2817 4.0342 0.7090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688514521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:22 Heat of formation + Delta-G solvation = -48.335293 kcal Electronic energy + Delta-G solvation = -20755.725850 eV Core-core repulsion = 17536.011533 eV Total energy + Delta-G solvation = -3219.714317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.99730 -38.86701 -36.94210 -34.49089 -33.72736 -32.13592 -30.73806 -30.14085 -28.13522 -26.79233 -25.05434 -23.86278 -22.47650 -21.39482 -21.10522 -20.42939 -17.85039 -17.34514 -16.59669 -16.35443 -15.81431 -15.57271 -14.73111 -14.42287 -14.02803 -13.91096 -13.74211 -13.49569 -13.38954 -13.16802 -12.69095 -12.53683 -12.41657 -12.13837 -11.81337 -11.56604 -11.45778 -11.34492 -11.16934 -11.05890 -10.89399 -10.83814 -10.54820 -10.35478 -9.94206 -9.26788 -9.19039 -8.47143 -8.19933 -6.44946 -6.33579 -3.90914 2.17716 2.53182 3.17677 3.18605 3.23173 3.53116 3.96002 4.05132 4.33472 4.41176 4.64702 4.78541 4.85362 4.97385 5.05185 5.10759 5.19067 5.29202 5.40346 5.47229 5.55449 5.62817 5.64735 5.68016 5.72925 5.76690 5.83789 5.89600 6.03077 6.18886 6.21314 6.49636 6.66236 6.84031 6.89410 7.10711 7.30492 7.42297 7.61144 7.92559 8.10689 8.17376 9.12294 9.86312 10.85117 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.056280 B = 0.002857 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.391113 B = 9797.738842 C =10026.483419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.074 3.926 4 H 0.067 0.933 5 C -0.157 4.157 6 C 0.131 3.869 7 H 0.089 0.911 8 N -0.749 5.749 9 C 0.119 3.881 10 C -0.139 4.139 11 C -0.191 4.191 12 C 0.115 3.885 13 O -0.187 6.187 14 C -0.387 4.387 15 H 0.088 0.912 16 C 0.036 3.964 17 N -0.868 5.868 18 Si 0.938 3.062 19 H -0.275 1.275 20 H -0.269 1.269 21 H -0.279 1.279 22 C -0.150 4.150 23 C -0.145 4.145 24 C 0.027 3.973 25 O -0.371 6.371 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.391 0.609 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.267 0.733 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 -15.316 -9.077 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.085 0.915 5 C -0.196 4.196 6 C 0.023 3.977 7 H 0.107 0.893 8 N -0.386 5.386 9 C 0.022 3.978 10 C -0.161 4.161 11 C -0.211 4.211 12 C 0.062 3.938 13 O -0.092 6.092 14 C -0.464 4.464 15 H 0.106 0.894 16 C -0.167 4.167 17 N -0.505 5.505 18 Si 0.763 3.237 19 H -0.201 1.201 20 H -0.194 1.194 21 H -0.204 1.204 22 C -0.170 4.170 23 C -0.167 4.167 24 C -0.051 4.051 25 O -0.289 6.289 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.225 0.775 34 H 0.124 0.876 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.978 -15.296 -8.354 21.729 hybrid contribution 0.542 0.853 -1.119 1.508 sum -12.435 -14.442 -9.472 21.282 Atomic orbital electron populations 1.21723 0.95280 1.01467 1.02338 1.21594 0.96768 0.94482 1.02678 1.23005 0.93285 0.94106 0.87984 0.91539 1.23234 0.96151 0.99194 1.00996 1.22009 0.92867 0.87805 0.95000 0.89316 1.44256 1.52868 1.34136 1.07333 1.17391 0.96178 0.92693 0.91581 1.20225 1.00849 0.96962 0.98083 1.20993 1.03658 1.01980 0.94430 1.19251 0.92029 0.91693 0.90784 1.83989 1.54771 1.34629 1.35837 1.21232 1.31802 1.02136 0.91225 0.89441 1.25226 0.97383 0.97930 0.96172 1.70050 1.38737 1.33102 1.08576 0.85759 0.79305 0.79627 0.78980 1.20052 1.19369 1.20391 1.20031 1.00617 0.97087 0.99285 1.20203 1.03238 1.01086 0.92156 1.24090 0.88743 0.89546 1.02742 1.89144 1.57043 1.43008 1.39729 0.92809 0.91934 0.92925 0.90811 0.91032 0.90031 0.89819 0.77473 0.87626 0.85469 0.92274 0.86460 0.87130 0.88805 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.83 37.16 0.37 -0.76 16 2 C -0.12 -0.89 5.58 -26.73 -0.15 -1.04 16 3 C 0.07 0.67 3.27 -25.96 -0.08 0.59 16 4 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.16 -1.38 6.40 -25.16 -0.16 -1.54 16 6 C 0.13 1.46 3.07 -66.36 -0.20 1.26 16 7 H 0.09 1.06 6.61 -51.93 -0.34 0.71 16 8 N -0.75 -9.58 5.29 -50.60 -0.27 -9.85 16 9 C 0.12 1.99 6.66 -83.71 -0.56 1.43 16 10 C -0.14 -2.52 9.89 -39.40 -0.39 -2.91 16 11 C -0.19 -4.14 9.16 -39.42 -0.36 -4.51 16 12 C 0.12 2.80 6.65 -39.10 -0.26 2.54 16 13 O -0.19 -5.43 9.76 -0.05 0.00 -5.43 16 14 C -0.39 -10.99 9.48 30.88 0.29 -10.70 16 15 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 16 C 0.04 1.01 5.49 -17.51 -0.10 0.91 16 17 N -0.87 -25.96 13.67 55.48 0.76 -25.21 16 18 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 C -0.15 -3.19 9.98 -39.42 -0.39 -3.58 16 23 C -0.14 -2.58 9.21 -39.40 -0.36 -2.94 16 24 C 0.03 0.32 7.35 37.93 0.28 0.60 16 25 O -0.37 -4.37 11.00 -35.23 -0.39 -4.75 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.55 7.91 -51.93 -0.41 0.14 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.64 7.65 -51.93 -0.40 0.24 16 32 H 0.08 0.68 7.88 -51.93 -0.41 0.27 16 33 H 0.39 4.33 8.32 -40.82 -0.34 3.99 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.13 2.78 5.63 -52.49 -0.30 2.48 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 38 H 0.11 1.68 6.28 -52.48 -0.33 1.35 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.78 8.06 -51.93 -0.42 0.37 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -31.25 329.43 -7.77 -39.02 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.73 Total: 6.01 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -2.08 Total: -20.63 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.49 Total: -35.05 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.39 Total: -10.18 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.25 -7.77 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688514521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.312 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds