Wall clock time and date at job start Thu Apr 9 2020 15:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46687 * 2 1 4 4 H 1.08998 * 110.33557 * 304.20132 * 3 2 1 5 5 C 1.54474 * 110.46614 * 181.88732 * 3 2 1 6 6 C 1.54514 * 104.06694 * 217.14325 * 5 3 2 7 7 H 1.08995 * 110.62757 * 118.70057 * 6 5 3 8 8 N 1.46497 * 110.51189 * 241.35573 * 6 5 3 9 9 C 1.39775 * 120.00159 * 201.09157 * 8 6 5 10 10 C 1.38955 * 120.00999 * 180.02562 * 9 8 6 11 11 C 1.38014 * 119.99629 * 180.02562 * 10 9 8 12 12 C 1.38894 * 120.00320 * 359.97438 * 11 10 9 13 13 O 1.35807 * 119.99106 * 180.02562 * 12 11 10 14 14 C 1.34804 * 116.99726 * 5.54752 * 13 12 11 15 15 H 1.07997 * 120.00514 * 354.93102 * 14 13 12 16 16 C 1.38625 * 119.99980 * 174.94520 * 14 13 12 17 17 N 1.31586 * 119.99775 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00106 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46918 * 269.99215 * 18 16 14 20 20 H 1.48495 * 109.47261 * 29.99504 * 18 16 14 21 21 H 1.48499 * 109.47144 * 149.99554 * 18 16 14 22 22 C 1.38895 * 120.01729 * 0.29228 * 12 11 10 23 23 C 1.38014 * 120.00307 * 359.45841 * 22 12 11 24 24 C 1.54478 * 104.05824 * 359.97438 * 6 5 3 25 25 O 1.44429 * 110.37288 * 66.44946 * 3 2 1 26 26 H 1.09006 * 109.46479 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47132 * 300.00108 * 1 2 3 28 28 H 1.09003 * 109.46814 * 60.00752 * 1 2 3 29 29 H 1.08995 * 109.47355 * 240.00388 * 2 1 3 30 30 H 1.09003 * 109.46814 * 119.99248 * 2 1 3 31 31 H 1.09002 * 110.51750 * 98.49679 * 5 3 2 32 32 H 1.09007 * 110.51416 * 335.78533 * 5 3 2 33 33 H 0.97009 * 120.00220 * 21.09579 * 8 6 5 34 34 H 1.07997 * 119.99935 * 359.97438 * 10 9 8 35 35 H 1.08001 * 119.99655 * 179.97438 * 11 10 9 36 36 H 0.96997 * 119.99737 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.00247 * 179.72525 * 22 12 11 38 38 H 1.08004 * 120.00594 * 180.27366 * 23 22 12 39 39 H 1.09004 * 110.36977 * 142.80713 * 24 6 5 40 40 H 1.09000 * 110.37558 * 265.03476 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6245 1.9911 -0.8453 5 6 3.5837 1.4697 -0.0477 6 6 3.9665 2.6609 0.8590 7 1 4.5674 2.3232 1.7033 8 7 4.6881 3.6790 0.0916 9 6 5.5005 4.6058 0.7509 10 6 6.1846 5.5719 0.0233 11 6 6.9871 6.4866 0.6745 12 6 7.1104 6.4419 2.0573 13 8 7.8997 7.3424 2.6979 14 6 8.4432 8.3222 1.9483 15 1 8.3107 8.3187 0.8765 16 6 9.1726 9.3340 2.5532 17 7 9.3339 9.3384 3.8591 18 14 9.9264 10.6912 1.5144 19 1 11.2950 10.2932 1.0975 20 1 9.0877 10.9164 0.3098 21 1 9.9958 11.9431 2.3102 22 6 6.4311 5.4729 2.7845 23 6 5.6244 4.5612 2.1342 24 6 2.6086 3.2128 1.3467 25 8 1.6975 2.0969 1.2412 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 3.9316 1.6384 -1.0668 32 1 3.9945 0.5410 0.3483 33 1 4.6022 3.7099 -0.8742 34 1 6.0890 5.6064 -1.0519 35 1 7.5191 7.2373 0.1089 36 1 9.8439 10.0466 4.2824 37 1 6.5306 5.4356 3.8592 38 1 5.0927 3.8105 2.7000 39 1 2.6836 3.5442 2.3824 40 1 2.2817 4.0342 0.7090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688514521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:21 Heat of formation + Delta-G solvation = -68.585254 kcal Electronic energy + Delta-G solvation = -20756.603954 eV Core-core repulsion = 17536.011533 eV Total energy + Delta-G solvation = -3220.592421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03979 -40.38867 -38.53822 -35.77286 -34.44039 -34.10708 -32.03115 -31.51815 -29.08915 -28.26094 -26.94214 -24.60364 -23.93930 -22.67845 -21.99245 -21.63272 -19.66219 -18.94206 -17.94804 -17.48450 -16.65660 -16.64277 -16.23672 -15.95527 -15.44047 -15.25931 -15.18877 -14.63368 -14.39365 -14.19761 -14.08528 -13.97561 -13.56335 -13.45259 -13.21704 -12.85232 -12.67942 -12.55583 -12.37174 -12.26645 -12.10345 -11.82716 -11.74654 -11.54152 -11.09900 -10.94266 -10.73911 -10.18491 -9.78122 -8.39294 -7.96951 -6.03101 0.58157 0.91622 1.36948 1.46674 1.54378 2.22676 2.48682 2.90625 3.08394 3.24377 3.56300 3.65736 3.71699 3.98829 4.09242 4.14807 4.21426 4.23506 4.31391 4.45588 4.56583 4.58480 4.65888 4.77683 4.86166 4.86898 4.95571 5.00031 5.08741 5.11701 5.13154 5.25970 5.28223 5.44615 5.46464 5.54331 5.77945 5.85946 5.99497 6.11405 6.57802 7.00281 7.06658 7.93324 8.85231 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.056280 B = 0.002857 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.391113 B = 9797.738842 C =10026.483419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.069 3.931 4 H 0.072 0.928 5 C -0.148 4.148 6 C 0.126 3.874 7 H 0.086 0.914 8 N -0.733 5.733 9 C 0.150 3.850 10 C -0.141 4.141 11 C -0.194 4.194 12 C 0.064 3.936 13 O -0.243 6.243 14 C -0.405 4.405 15 H 0.099 0.901 16 C -0.030 4.030 17 N -0.927 5.927 18 Si 1.017 2.983 19 H -0.264 1.264 20 H -0.253 1.253 21 H -0.274 1.274 22 C -0.157 4.157 23 C -0.144 4.144 24 C 0.028 3.972 25 O -0.387 6.387 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.406 0.594 34 H 0.142 0.858 35 H 0.119 0.881 36 H 0.269 0.731 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.088 0.912 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.270 -17.199 -12.001 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.090 0.910 5 C -0.186 4.186 6 C 0.019 3.981 7 H 0.104 0.896 8 N -0.369 5.369 9 C 0.050 3.950 10 C -0.163 4.163 11 C -0.214 4.214 12 C 0.014 3.986 13 O -0.151 6.151 14 C -0.482 4.482 15 H 0.116 0.884 16 C -0.226 4.226 17 N -0.567 5.567 18 Si 0.837 3.163 19 H -0.189 1.189 20 H -0.177 1.177 21 H -0.198 1.198 22 C -0.176 4.176 23 C -0.166 4.166 24 C -0.050 4.050 25 O -0.306 6.306 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.242 0.758 34 H 0.159 0.841 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.158 0.842 39 H 0.107 0.893 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.366 -17.257 -11.334 25.152 hybrid contribution 0.666 1.098 -0.312 1.321 sum -13.699 -16.159 -11.645 24.174 Atomic orbital electron populations 1.21720 0.95445 1.02039 1.01636 1.21628 0.96634 0.93576 1.03534 1.23206 0.93647 0.94869 0.87089 0.90993 1.23210 0.95750 0.98283 1.01365 1.22151 0.92300 0.88145 0.95491 0.89555 1.44306 1.51295 1.33064 1.08196 1.17498 0.94354 0.91868 0.91279 1.20499 0.99852 0.96087 0.99866 1.21065 1.04192 1.02686 0.93438 1.19754 0.93857 0.92606 0.92379 1.83938 1.57390 1.36307 1.37421 1.21754 1.31916 1.02556 0.91973 0.88359 1.26545 0.97829 1.00583 0.97621 1.70209 1.40918 1.34670 1.10879 0.84604 0.78605 0.75724 0.77377 1.18922 1.17700 1.19839 1.20230 1.00871 0.97194 0.99345 1.20450 1.02430 1.00732 0.93008 1.24003 0.88968 0.89637 1.02403 1.89149 1.57229 1.43077 1.41175 0.91667 0.93750 0.92497 0.88698 0.91388 0.88313 0.88692 0.75778 0.84070 0.86285 0.92163 0.87004 0.84204 0.89346 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.83 71.98 0.71 -1.20 16 2 C -0.12 -1.39 5.58 30.60 0.17 -1.22 16 3 C 0.07 1.03 3.27 31.10 0.10 1.13 16 4 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 5 C -0.15 -1.97 6.40 31.61 0.20 -1.77 16 6 C 0.13 2.36 3.07 46.01 0.14 2.50 16 7 H 0.09 1.74 6.61 -2.39 -0.02 1.72 16 8 N -0.73 -15.66 5.29 -314.01 -1.66 -17.32 16 9 C 0.15 4.58 6.66 38.22 0.25 4.83 16 10 C -0.14 -4.75 9.89 22.39 0.22 -4.53 16 11 C -0.19 -8.47 9.16 22.37 0.20 -8.26 16 12 C 0.06 3.22 6.65 22.58 0.15 3.37 16 13 O -0.24 -14.95 9.76 -23.11 -0.23 -15.18 16 14 C -0.41 -24.11 9.48 67.91 0.64 -23.46 16 15 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 16 C -0.03 -1.73 5.49 84.82 0.47 -1.26 16 17 N -0.93 -58.38 13.67 21.61 0.30 -58.08 16 18 Si 1.02 43.85 29.55 68.60 2.03 45.88 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 22 C -0.16 -6.78 9.98 22.37 0.22 -6.55 16 23 C -0.14 -4.88 9.21 22.39 0.21 -4.67 16 24 C 0.03 0.59 7.35 72.48 0.53 1.13 16 25 O -0.39 -8.23 11.00 -148.98 -1.64 -9.87 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.04 0.71 7.91 -2.39 -0.02 0.69 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 1.02 7.65 -2.39 -0.02 1.00 16 32 H 0.09 1.12 7.88 -2.38 -0.02 1.10 16 33 H 0.41 6.90 8.32 -92.70 -0.77 6.13 16 34 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 35 H 0.12 5.28 5.63 -2.91 -0.02 5.27 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 38 H 0.14 3.89 6.28 -2.91 -0.02 3.87 16 39 H 0.09 1.91 8.14 -2.38 -0.02 1.90 16 40 H 0.06 1.30 8.06 -2.39 -0.02 1.28 16 Total: -1.00 -72.55 329.43 3.30 -69.25 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.27 Total: 25.28 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.23 Total: -39.96 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -1.37 Total: -75.40 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -1.86 Total: -25.04 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.55 3.30 -69.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688514521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.663 kcal (2) G-P(sol) polarization free energy of solvation -72.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds