Wall clock time and date at job start Thu Apr 9 2020 15:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46827 * 2 1 4 4 H 1.09000 * 110.67579 * 52.03670 * 3 2 1 5 5 C 1.54998 * 110.61417 * 174.99831 * 3 2 1 6 6 C 1.54815 * 102.08955 * 155.52553 * 5 3 2 7 7 H 1.08996 * 110.48926 * 97.93414 * 6 5 3 8 8 N 1.46503 * 110.48332 * 220.44358 * 6 5 3 9 9 C 1.39785 * 119.99573 * 205.00312 * 8 6 5 10 10 C 1.38945 * 120.00880 * 359.71719 * 9 8 6 11 11 C 1.38013 * 119.99356 * 179.76888 * 10 9 8 12 12 C 1.38896 * 120.00699 * 0.51874 * 11 10 9 13 13 O 1.35800 * 119.99550 * 179.76678 * 12 11 10 14 14 C 1.34814 * 116.99897 * 174.43097 * 13 12 11 15 15 H 1.08000 * 120.00087 * 5.05287 * 14 13 12 16 16 C 1.38621 * 119.99893 * 185.05218 * 14 13 12 17 17 N 1.31581 * 119.99932 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00159 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47053 * 59.99986 * 18 16 14 20 20 H 1.48496 * 109.47267 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47064 * 300.00119 * 18 16 14 22 22 C 1.38898 * 120.01159 * 359.73258 * 12 11 10 23 23 C 1.38013 * 120.00685 * 0.02562 * 22 12 11 24 24 C 1.54099 * 104.18645 * 339.11703 * 6 5 3 25 25 O 1.43739 * 107.29467 * 357.97266 * 24 6 5 26 26 H 1.08999 * 109.47563 * 300.00068 * 1 2 3 27 27 H 1.09005 * 109.46966 * 60.00275 * 1 2 3 28 28 H 1.09007 * 109.47332 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47053 * 239.99951 * 2 1 3 30 30 H 1.09001 * 109.46487 * 119.99764 * 2 1 3 31 31 H 1.09002 * 110.90642 * 273.71934 * 5 3 2 32 32 H 1.09002 * 110.91023 * 37.32690 * 5 3 2 33 33 H 0.96996 * 120.00712 * 24.99631 * 8 6 5 34 34 H 1.08003 * 120.00390 * 0.02885 * 10 9 8 35 35 H 1.08000 * 119.99726 * 180.23167 * 11 10 9 36 36 H 0.97003 * 120.00287 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.00163 * 179.97438 * 22 12 11 38 38 H 1.07995 * 120.00378 * 180.02562 * 23 22 12 39 39 H 1.09004 * 109.87523 * 117.40005 * 24 6 5 40 40 H 1.08998 * 109.87861 * 238.39416 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5767 2.0144 0.8040 5 6 3.5844 1.4753 0.1265 6 6 3.9332 2.8409 -0.5141 7 1 4.0725 3.5992 0.2563 8 7 5.1362 2.7262 -1.3424 9 6 5.9275 3.8527 -1.5852 10 6 5.5700 5.0824 -1.0459 11 6 6.3541 6.1934 -1.2818 12 6 7.4945 6.0846 -2.0672 13 8 8.2632 7.1790 -2.3031 14 6 9.4156 6.9841 -2.9750 15 1 9.6516 6.0072 -3.3704 16 6 10.2976 8.0377 -3.1585 17 7 10.0103 9.2278 -2.6764 18 14 11.8947 7.7675 -4.0889 19 1 11.5923 7.3084 -5.4684 20 1 12.6551 9.0417 -4.1473 21 1 12.7060 6.7379 -3.3912 22 6 7.8493 4.8566 -2.6107 23 6 7.0683 3.7442 -2.3710 24 6 2.7072 3.1729 -1.3867 25 8 1.7932 2.0690 -1.2771 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8897 1.4471 1.1725 32 1 4.0380 0.6565 -0.4320 33 1 5.3837 1.8688 -1.7222 34 1 4.6810 5.1679 -0.4386 35 1 6.0783 7.1484 -0.8596 36 1 10.6276 9.9650 -2.8044 37 1 8.7358 4.7724 -3.2217 38 1 7.3444 2.7894 -2.7933 39 1 2.2318 4.0851 -1.0260 40 1 3.0147 3.3009 -2.4245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688514522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:26 Heat of formation + Delta-G solvation = -48.165812 kcal Electronic energy + Delta-G solvation = -20737.637783 eV Core-core repulsion = 17517.930815 eV Total energy + Delta-G solvation = -3219.706968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.98732 -38.86620 -36.93823 -34.48345 -33.73261 -32.13399 -30.77323 -30.13372 -28.18842 -26.80138 -25.05858 -23.83964 -22.48392 -21.36620 -21.15551 -20.26743 -17.83547 -17.31960 -16.86559 -16.29307 -15.90507 -15.64752 -14.61298 -14.39440 -14.00915 -13.86799 -13.70085 -13.55630 -13.39832 -13.11887 -12.67692 -12.47895 -12.46891 -12.14245 -11.74692 -11.58270 -11.50146 -11.42192 -11.15597 -11.10803 -10.89828 -10.84229 -10.57804 -10.36442 -9.85574 -9.25043 -9.18147 -8.46332 -8.19933 -6.44198 -6.33239 -3.90668 2.17744 2.53330 3.18401 3.19330 3.22049 3.60263 3.77921 4.05374 4.32400 4.50740 4.65408 4.76484 4.89794 4.93646 4.95963 5.15029 5.19198 5.25458 5.41005 5.50309 5.54075 5.61306 5.63398 5.64788 5.72286 5.76272 5.83333 5.91141 6.01418 6.20229 6.22605 6.50520 6.75636 6.84387 6.88331 7.10761 7.30421 7.42559 7.61462 7.93068 8.10897 8.18609 9.12518 9.86413 10.85370 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.058695 B = 0.002840 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.926517 B = 9857.328781 C =10106.241478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.075 3.925 4 H 0.070 0.930 5 C -0.157 4.157 6 C 0.130 3.870 7 H 0.091 0.909 8 N -0.749 5.749 9 C 0.119 3.881 10 C -0.146 4.146 11 C -0.150 4.150 12 C 0.115 3.885 13 O -0.187 6.187 14 C -0.388 4.388 15 H 0.088 0.912 16 C 0.036 3.964 17 N -0.869 5.869 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.271 1.271 22 C -0.190 4.190 23 C -0.139 4.139 24 C 0.028 3.972 25 O -0.373 6.373 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.392 0.608 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.268 0.732 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.716 -16.260 5.538 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.017 3.983 4 H 0.088 0.912 5 C -0.196 4.196 6 C 0.022 3.978 7 H 0.109 0.891 8 N -0.384 5.384 9 C 0.022 3.978 10 C -0.168 4.168 11 C -0.170 4.170 12 C 0.062 3.938 13 O -0.092 6.092 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.167 4.167 17 N -0.505 5.505 18 Si 0.763 3.237 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.197 1.197 22 C -0.210 4.210 23 C -0.161 4.161 24 C -0.051 4.051 25 O -0.293 6.293 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.226 0.774 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.901 -15.746 5.546 21.724 hybrid contribution 1.118 -0.372 -0.506 1.282 sum -12.783 -16.118 5.040 21.180 Atomic orbital electron populations 1.21737 0.95273 1.01529 1.02299 1.21547 0.96707 0.94449 1.02720 1.23148 0.93671 0.94404 0.87043 0.91171 1.23437 0.96216 0.97769 1.02134 1.22044 0.85760 0.97238 0.92762 0.89143 1.44246 1.26493 1.09052 1.58625 1.17402 0.92994 0.87124 1.00306 1.20185 1.00977 0.91337 1.04270 1.20024 0.95826 0.98501 1.02681 1.19247 0.92355 0.87419 0.94761 1.83988 1.30717 1.27479 1.67029 1.21187 0.94620 0.97699 1.32941 0.89491 1.25219 0.98973 0.94637 0.97846 1.70038 1.36605 1.00501 1.43353 0.85831 0.80454 0.77894 0.79509 1.19669 1.20411 1.19675 1.20996 1.02288 0.92424 1.05301 1.20232 0.95572 0.98131 1.02166 1.23881 0.89637 0.89408 1.02170 1.88884 1.58786 1.45410 1.36181 0.92845 0.92013 0.92778 0.91070 0.90724 0.89738 0.89986 0.77371 0.87203 0.86481 0.92224 0.85464 0.87592 0.92217 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.86 37.16 0.37 -0.73 16 2 C -0.12 -0.88 5.69 -26.73 -0.15 -1.03 16 3 C 0.08 0.67 3.29 -25.68 -0.08 0.59 16 4 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.16 -1.39 6.30 -24.72 -0.16 -1.54 16 6 C 0.13 1.44 3.11 -66.40 -0.21 1.23 16 7 H 0.09 1.02 6.41 -51.93 -0.33 0.69 16 8 N -0.75 -9.80 5.21 -50.64 -0.26 -10.06 16 9 C 0.12 2.01 6.66 -83.70 -0.56 1.45 16 10 C -0.15 -2.59 9.21 -39.40 -0.36 -2.95 16 11 C -0.15 -3.19 9.98 -39.42 -0.39 -3.58 16 12 C 0.11 2.80 6.65 -39.09 -0.26 2.54 16 13 O -0.19 -5.43 9.76 -0.06 0.00 -5.43 16 14 C -0.39 -11.02 9.48 30.87 0.29 -10.72 16 15 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 16 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 17 N -0.87 -25.97 13.67 55.48 0.76 -25.22 16 18 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 C -0.19 -4.15 9.16 -39.42 -0.36 -4.51 16 23 C -0.14 -2.54 9.89 -39.40 -0.39 -2.93 16 24 C 0.03 0.32 7.50 37.73 0.28 0.61 16 25 O -0.37 -4.42 11.08 -35.23 -0.39 -4.81 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.71 7.68 -51.93 -0.40 0.31 16 33 H 0.39 4.59 8.41 -40.82 -0.34 4.24 16 34 H 0.11 1.65 6.20 -52.48 -0.33 1.32 16 35 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.13 2.78 5.63 -52.49 -0.30 2.49 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -31.33 329.81 -7.77 -39.09 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.74 Total: 6.22 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.08 Total: -20.65 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.49 Total: -35.28 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.39 Total: -10.24 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.33 -7.77 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688514522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.073 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds