Wall clock time and date at job start Thu Apr 9 2020 15:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46799 * 2 1 4 4 H 1.08996 * 109.82546 * 305.88236 * 3 2 1 5 5 C 1.54383 * 109.82712 * 184.99412 * 3 2 1 6 6 C 1.55309 * 102.43692 * 218.93735 * 5 3 2 7 7 H 1.09002 * 111.12688 * 276.31853 * 6 5 3 8 8 N 1.46501 * 111.12157 * 152.15597 * 6 5 3 9 9 C 1.39785 * 119.99800 * 155.00221 * 8 6 5 10 10 C 1.38954 * 120.00563 * 359.72552 * 9 8 6 11 11 C 1.38007 * 119.99378 * 179.72246 * 10 9 8 12 12 C 1.38897 * 120.00437 * 0.55037 * 11 10 9 13 13 O 1.35798 * 119.99330 * 179.70467 * 12 11 10 14 14 C 1.34816 * 116.99935 * 174.48514 * 13 12 11 15 15 H 1.08004 * 120.00349 * 5.05530 * 14 13 12 16 16 C 1.38618 * 120.00045 * 185.05480 * 14 13 12 17 17 N 1.31581 * 119.99907 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00272 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46849 * 60.00096 * 18 16 14 20 20 H 1.48497 * 109.47344 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47186 * 300.00165 * 18 16 14 22 22 C 1.38901 * 120.01486 * 359.72499 * 12 11 10 23 23 C 1.38011 * 120.00465 * 359.97438 * 22 12 11 24 24 C 1.55500 * 100.69382 * 34.13517 * 6 5 3 25 25 O 1.43242 * 109.90292 * 66.81890 * 3 2 1 26 26 H 1.08993 * 109.47759 * 300.00000 * 1 2 3 27 27 H 1.09004 * 109.46804 * 60.00518 * 1 2 3 28 28 H 1.09005 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47266 * 239.99863 * 2 1 3 30 30 H 1.08998 * 109.47156 * 119.99786 * 2 1 3 31 31 H 1.08996 * 110.85121 * 337.23115 * 5 3 2 32 32 H 1.09005 * 110.84268 * 100.64860 * 5 3 2 33 33 H 0.96994 * 120.00244 * 335.00028 * 8 6 5 34 34 H 1.08001 * 120.00170 * 359.97438 * 10 9 8 35 35 H 1.07997 * 120.00119 * 180.25500 * 11 10 9 36 36 H 0.97002 * 120.00352 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.00082 * 180.02562 * 22 12 11 38 38 H 1.07992 * 120.00469 * 180.02562 * 23 22 12 39 39 H 1.09001 * 110.27952 * 204.65338 * 24 6 5 40 40 H 1.08996 * 110.38087 * 82.55391 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5965 1.9914 -0.8308 5 6 3.5785 1.4541 -0.1264 6 6 3.9841 2.6081 0.8306 7 1 3.9113 3.5751 0.3329 8 7 5.3284 2.3962 1.3731 9 6 6.0877 3.4874 1.8050 10 6 5.5699 4.7737 1.7147 11 6 6.3175 5.8503 2.1465 12 6 7.5920 5.6493 2.6609 13 8 8.3298 6.7095 3.0802 14 6 9.5096 6.4378 3.6733 15 1 9.8671 5.4199 3.7235 16 6 10.2640 7.4649 4.2187 17 7 9.8283 8.7050 4.1579 18 14 11.8984 7.0885 5.0411 19 1 12.8130 6.4548 4.0576 20 1 12.5037 8.3495 5.5397 21 1 11.6775 6.1617 6.1802 22 6 8.1122 4.3642 2.7461 23 6 7.3625 3.2866 2.3201 24 6 2.8991 2.4621 1.9348 25 8 1.7026 2.0790 1.2381 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.0023 0.5068 0.2068 32 1 3.8819 1.6742 -1.1500 33 1 5.6915 1.4987 1.4325 34 1 4.5808 4.9304 1.3102 35 1 5.9135 6.8497 2.0801 36 1 10.3563 9.4239 4.5392 37 1 9.1030 4.2082 3.1464 38 1 7.7668 2.2874 2.3867 39 1 2.7507 3.4129 2.4468 40 1 3.1852 1.6895 2.6484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688514523.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:29 Heat of formation + Delta-G solvation = -49.279692 kcal Electronic energy + Delta-G solvation = -20735.445279 eV Core-core repulsion = 17515.690009 eV Total energy + Delta-G solvation = -3219.755269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.99891 -38.89597 -36.96771 -34.49055 -33.68166 -32.14569 -30.80632 -30.15426 -28.21739 -26.78491 -25.06896 -23.80996 -22.59781 -21.29843 -21.15290 -20.24754 -17.86375 -17.51510 -16.92355 -16.23201 -16.08313 -15.06736 -14.63637 -14.41792 -14.17273 -13.93821 -13.68368 -13.50939 -13.49485 -13.10946 -12.64996 -12.58118 -12.44863 -12.21286 -11.88591 -11.58231 -11.49811 -11.37921 -11.16959 -11.12614 -10.89512 -10.82817 -10.57964 -10.36359 -9.67811 -9.27284 -9.19918 -8.47743 -8.20966 -6.46381 -6.33884 -3.91435 2.16870 2.51638 3.17789 3.18969 3.21614 3.42808 3.93232 4.04808 4.29025 4.48333 4.62186 4.74522 4.88211 4.92007 4.95118 5.15957 5.18833 5.27478 5.40071 5.50671 5.53141 5.61789 5.64728 5.68376 5.71160 5.76210 5.82376 5.98099 6.03519 6.19080 6.20861 6.49189 6.80772 6.84315 6.90710 7.09729 7.29380 7.41110 7.59893 7.90345 8.10129 8.15541 9.11792 9.85510 10.84667 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.056845 B = 0.002847 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.451901 B = 9833.801278 C =10087.511102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.081 3.919 4 H 0.081 0.919 5 C -0.160 4.160 6 C 0.131 3.869 7 H 0.096 0.904 8 N -0.745 5.745 9 C 0.118 3.882 10 C -0.145 4.145 11 C -0.150 4.150 12 C 0.116 3.884 13 O -0.187 6.187 14 C -0.388 4.388 15 H 0.088 0.912 16 C 0.037 3.963 17 N -0.868 5.868 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.271 1.271 22 C -0.191 4.191 23 C -0.138 4.138 24 C 0.032 3.968 25 O -0.376 6.376 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.393 0.607 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.268 0.732 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.788 -15.774 -7.763 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.023 3.977 4 H 0.098 0.902 5 C -0.199 4.199 6 C 0.023 3.977 7 H 0.114 0.886 8 N -0.381 5.381 9 C 0.021 3.979 10 C -0.167 4.167 11 C -0.170 4.170 12 C 0.063 3.937 13 O -0.092 6.092 14 C -0.465 4.465 15 H 0.105 0.895 16 C -0.167 4.167 17 N -0.504 5.504 18 Si 0.763 3.237 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.197 1.197 22 C -0.211 4.211 23 C -0.160 4.160 24 C -0.047 4.047 25 O -0.295 6.295 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.227 0.773 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.089 -15.149 -7.676 21.441 hybrid contribution 1.241 -0.688 0.405 1.475 sum -11.848 -15.836 -7.270 21.072 Atomic orbital electron populations 1.21702 0.95295 1.01312 1.02318 1.21909 0.96976 0.95915 1.02301 1.22702 0.93601 0.93602 0.87774 0.90160 1.23406 0.95508 0.99670 1.01274 1.22410 0.83480 0.99004 0.92831 0.88634 1.43993 1.14527 1.06698 1.72874 1.17383 0.91857 0.87159 1.01519 1.20211 0.99816 0.90765 1.05863 1.20032 0.93047 0.98598 1.05342 1.19256 0.91323 0.87654 0.95477 1.83990 1.30361 1.27811 1.66994 1.21188 0.94373 0.95096 1.35821 0.89480 1.25222 0.99550 0.94605 0.97286 1.70037 1.38123 0.99085 1.43199 0.85831 0.80537 0.77935 0.79379 1.19670 1.20403 1.19667 1.20994 1.01350 0.92023 1.06731 1.20222 0.93470 0.98063 1.04245 1.24074 0.84637 1.00656 0.95298 1.88446 1.29645 1.78263 1.33127 0.91965 0.92884 0.93012 0.91170 0.91562 0.90164 0.89619 0.77349 0.87085 0.86436 0.92205 0.85446 0.87584 0.89399 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.83 37.16 0.37 -0.77 16 2 C -0.13 -1.03 5.51 -26.73 -0.15 -1.18 16 3 C 0.08 0.73 3.51 -26.00 -0.09 0.64 16 4 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 5 C -0.16 -1.38 6.19 -24.78 -0.15 -1.53 16 6 C 0.13 1.44 3.24 -65.38 -0.21 1.23 16 7 H 0.10 1.12 6.33 -51.93 -0.33 0.79 16 8 N -0.75 -9.46 5.40 -49.66 -0.27 -9.73 16 9 C 0.12 1.97 6.66 -83.70 -0.56 1.41 16 10 C -0.14 -2.56 9.22 -39.40 -0.36 -2.93 16 11 C -0.15 -3.18 9.98 -39.42 -0.39 -3.57 16 12 C 0.12 2.80 6.65 -39.09 -0.26 2.54 16 13 O -0.19 -5.40 9.76 -0.06 0.00 -5.40 16 14 C -0.39 -10.99 9.48 30.87 0.29 -10.69 16 15 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 16 C 0.04 1.02 5.49 -17.52 -0.10 0.93 16 17 N -0.87 -25.91 13.67 55.48 0.76 -25.15 16 18 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 C -0.19 -4.13 9.16 -39.42 -0.36 -4.50 16 23 C -0.14 -2.49 9.89 -39.40 -0.39 -2.87 16 24 C 0.03 0.37 7.51 38.49 0.29 0.66 16 25 O -0.38 -4.39 10.66 -35.23 -0.38 -4.77 16 26 H 0.06 0.55 7.90 -51.93 -0.41 0.14 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.39 4.32 8.58 -40.82 -0.35 3.97 16 34 H 0.11 1.68 6.16 -52.49 -0.32 1.36 16 35 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.13 2.76 5.63 -52.49 -0.30 2.47 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -31.07 329.74 -7.76 -38.83 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.74 Total: 6.06 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.08 Total: -20.64 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.49 Total: -34.88 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.38 Total: -10.17 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.07 -7.76 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688514523.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.446 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds