Wall clock time and date at job start Thu Apr 9 2020 15:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46799 * 2 1 4 4 H 1.08996 * 109.82546 * 305.88236 * 3 2 1 5 5 C 1.54383 * 109.82712 * 184.99412 * 3 2 1 6 6 C 1.55309 * 102.43692 * 218.93735 * 5 3 2 7 7 H 1.09002 * 111.12688 * 276.31853 * 6 5 3 8 8 N 1.46501 * 111.12157 * 152.15597 * 6 5 3 9 9 C 1.39785 * 119.99800 * 155.00221 * 8 6 5 10 10 C 1.38954 * 120.00563 * 359.72552 * 9 8 6 11 11 C 1.38007 * 119.99378 * 179.72246 * 10 9 8 12 12 C 1.38897 * 120.00437 * 0.55037 * 11 10 9 13 13 O 1.35798 * 119.99330 * 179.70467 * 12 11 10 14 14 C 1.34816 * 116.99935 * 174.48514 * 13 12 11 15 15 H 1.08004 * 120.00349 * 5.05530 * 14 13 12 16 16 C 1.38618 * 120.00045 * 185.05480 * 14 13 12 17 17 N 1.31581 * 119.99907 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00272 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46849 * 60.00096 * 18 16 14 20 20 H 1.48497 * 109.47344 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47186 * 300.00165 * 18 16 14 22 22 C 1.38901 * 120.01486 * 359.72499 * 12 11 10 23 23 C 1.38011 * 120.00465 * 359.97438 * 22 12 11 24 24 C 1.55500 * 100.69382 * 34.13517 * 6 5 3 25 25 O 1.43242 * 109.90292 * 66.81890 * 3 2 1 26 26 H 1.08993 * 109.47759 * 300.00000 * 1 2 3 27 27 H 1.09004 * 109.46804 * 60.00518 * 1 2 3 28 28 H 1.09005 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47266 * 239.99863 * 2 1 3 30 30 H 1.08998 * 109.47156 * 119.99786 * 2 1 3 31 31 H 1.08996 * 110.85121 * 337.23115 * 5 3 2 32 32 H 1.09005 * 110.84268 * 100.64860 * 5 3 2 33 33 H 0.96994 * 120.00244 * 335.00028 * 8 6 5 34 34 H 1.08001 * 120.00170 * 359.97438 * 10 9 8 35 35 H 1.07997 * 120.00119 * 180.25500 * 11 10 9 36 36 H 0.97002 * 120.00352 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.00082 * 180.02562 * 22 12 11 38 38 H 1.07992 * 120.00469 * 180.02562 * 23 22 12 39 39 H 1.09001 * 110.27952 * 204.65338 * 24 6 5 40 40 H 1.08996 * 110.38087 * 82.55391 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5965 1.9914 -0.8308 5 6 3.5785 1.4541 -0.1264 6 6 3.9841 2.6081 0.8306 7 1 3.9113 3.5751 0.3329 8 7 5.3284 2.3962 1.3731 9 6 6.0877 3.4874 1.8050 10 6 5.5699 4.7737 1.7147 11 6 6.3175 5.8503 2.1465 12 6 7.5920 5.6493 2.6609 13 8 8.3298 6.7095 3.0802 14 6 9.5096 6.4378 3.6733 15 1 9.8671 5.4199 3.7235 16 6 10.2640 7.4649 4.2187 17 7 9.8283 8.7050 4.1579 18 14 11.8984 7.0885 5.0411 19 1 12.8130 6.4548 4.0576 20 1 12.5037 8.3495 5.5397 21 1 11.6775 6.1617 6.1802 22 6 8.1122 4.3642 2.7461 23 6 7.3625 3.2866 2.3201 24 6 2.8991 2.4621 1.9348 25 8 1.7026 2.0790 1.2381 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.0023 0.5068 0.2068 32 1 3.8819 1.6742 -1.1500 33 1 5.6915 1.4987 1.4325 34 1 4.5808 4.9304 1.3102 35 1 5.9135 6.8497 2.0801 36 1 10.3563 9.4239 4.5392 37 1 9.1030 4.2082 3.1464 38 1 7.7668 2.2874 2.3867 39 1 2.7507 3.4129 2.4468 40 1 3.1852 1.6895 2.6484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688514523.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:28 Heat of formation + Delta-G solvation = -69.340368 kcal Electronic energy + Delta-G solvation = -20736.315175 eV Core-core repulsion = 17515.690009 eV Total energy + Delta-G solvation = -3220.625166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02084 -40.41304 -38.56488 -35.78072 -34.39283 -34.10909 -32.05858 -31.55475 -29.18061 -28.23489 -26.94730 -24.54620 -24.01165 -22.71067 -22.06637 -21.35623 -19.64043 -18.94514 -18.26158 -17.37314 -17.21647 -16.35948 -16.08426 -15.65585 -15.42263 -15.39179 -15.08873 -14.60324 -14.48898 -14.35240 -14.09908 -13.80253 -13.70059 -13.44337 -13.25769 -12.84432 -12.70248 -12.53048 -12.41690 -12.28688 -12.14470 -11.98288 -11.76158 -11.51393 -11.09917 -10.91252 -10.48320 -10.17580 -9.78483 -8.39011 -7.97751 -6.03073 0.57907 0.90918 1.37065 1.48200 1.53232 2.22919 2.40254 2.90020 3.05545 3.24197 3.51318 3.66014 3.80006 3.91809 4.05516 4.12450 4.19356 4.23475 4.27650 4.50447 4.56561 4.60150 4.65639 4.75705 4.84969 4.88651 4.97272 4.99730 5.05902 5.11955 5.13181 5.28002 5.33313 5.43960 5.47170 5.54085 5.77905 5.95595 6.08353 6.11244 6.55914 6.98847 7.06673 7.93170 8.85223 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.056845 B = 0.002847 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.451901 B = 9833.801278 C =10087.511102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.075 3.925 4 H 0.087 0.913 5 C -0.148 4.148 6 C 0.125 3.875 7 H 0.093 0.907 8 N -0.729 5.729 9 C 0.150 3.850 10 C -0.144 4.144 11 C -0.157 4.157 12 C 0.064 3.936 13 O -0.242 6.242 14 C -0.407 4.407 15 H 0.099 0.901 16 C -0.029 4.029 17 N -0.927 5.927 18 Si 1.017 2.983 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.194 4.194 23 C -0.140 4.140 24 C 0.034 3.966 25 O -0.393 6.393 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.407 0.593 34 H 0.141 0.859 35 H 0.112 0.888 36 H 0.270 0.730 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.382 -19.246 -8.885 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.018 3.982 4 H 0.105 0.895 5 C -0.186 4.186 6 C 0.018 3.982 7 H 0.111 0.889 8 N -0.364 5.364 9 C 0.050 3.950 10 C -0.166 4.166 11 C -0.177 4.177 12 C 0.015 3.985 13 O -0.150 6.150 14 C -0.483 4.483 15 H 0.117 0.883 16 C -0.225 4.225 17 N -0.566 5.566 18 Si 0.836 3.164 19 H -0.182 1.182 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.214 4.214 23 C -0.162 4.162 24 C -0.044 4.044 25 O -0.312 6.312 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.243 0.757 34 H 0.158 0.842 35 H 0.130 0.870 36 H 0.078 0.922 37 H 0.138 0.862 38 H 0.160 0.840 39 H 0.096 0.904 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.744 -18.711 -8.838 24.842 hybrid contribution 1.083 0.127 0.582 1.236 sum -12.661 -18.584 -8.256 23.954 Atomic orbital electron populations 1.21702 0.95463 1.01818 1.01707 1.21909 0.96840 0.95092 1.03005 1.22904 0.94083 0.94336 0.86895 0.89468 1.23370 0.94954 0.98994 1.01330 1.22540 0.82144 1.00221 0.93309 0.88919 1.44018 1.14731 1.06233 1.71414 1.17486 0.91364 0.87918 0.98255 1.20459 1.00629 0.90293 1.05245 1.20229 0.92490 0.99689 1.05244 1.19761 0.92606 0.88116 0.98058 1.83939 1.31380 1.30227 1.69463 1.21721 0.94792 0.95942 1.35855 0.88342 1.26541 1.03874 0.94203 0.97912 1.70200 1.40369 1.00404 1.45672 0.84673 0.75079 0.78082 0.78527 1.18181 1.19885 1.18297 1.21071 1.01489 0.92086 1.06756 1.20497 0.93637 0.98577 1.03466 1.23981 0.84840 1.00256 0.95371 1.88446 1.29840 1.78686 1.34251 0.93725 0.92345 0.92005 0.89214 0.92033 0.88850 0.88140 0.75666 0.84172 0.86997 0.92151 0.86223 0.84006 0.90378 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.83 71.98 0.71 -1.23 16 2 C -0.13 -1.61 5.51 30.60 0.17 -1.44 16 3 C 0.08 1.11 3.51 31.07 0.11 1.22 16 4 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 5 C -0.15 -1.92 6.19 31.86 0.20 -1.72 16 6 C 0.13 2.30 3.24 46.64 0.15 2.45 16 7 H 0.09 1.84 6.33 -2.39 -0.02 1.82 16 8 N -0.73 -15.44 5.40 -311.02 -1.68 -17.12 16 9 C 0.15 4.54 6.66 38.22 0.25 4.79 16 10 C -0.14 -4.86 9.22 22.39 0.21 -4.66 16 11 C -0.16 -6.76 9.98 22.37 0.22 -6.54 16 12 C 0.06 3.24 6.65 22.59 0.15 3.39 16 13 O -0.24 -14.89 9.76 -23.13 -0.23 -15.12 16 14 C -0.41 -24.12 9.48 67.91 0.64 -23.48 16 15 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 16 C -0.03 -1.69 5.49 84.82 0.47 -1.22 16 17 N -0.93 -58.28 13.67 21.61 0.30 -57.98 16 18 Si 1.02 43.73 29.55 68.60 2.03 45.76 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 C -0.19 -8.44 9.16 22.37 0.20 -8.23 16 23 C -0.14 -4.68 9.89 22.39 0.22 -4.46 16 24 C 0.03 0.69 7.51 72.84 0.55 1.24 16 25 O -0.39 -8.27 10.66 -148.98 -1.59 -9.86 16 26 H 0.04 0.73 7.90 -2.39 -0.02 0.71 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 1.01 7.70 -2.39 -0.02 0.99 16 32 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.41 6.88 8.58 -92.71 -0.80 6.08 16 34 H 0.14 3.88 6.16 -2.91 -0.02 3.87 16 35 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.12 5.28 5.63 -2.91 -0.02 5.26 16 38 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -72.20 329.74 3.33 -68.87 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.25 Total: 25.34 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 4.25 Total: -39.88 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -1.38 Total: -75.11 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.81 Total: -24.98 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -72.20 3.33 -68.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688514523.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.474 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds