Wall clock time and date at job start Thu Apr 9 2020 15:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 H 1.08995 * 110.33587 * 52.74825 * 3 2 1 5 5 C 1.54475 * 110.37389 * 175.00502 * 3 2 1 6 6 C 1.54499 * 104.06842 * 142.80796 * 5 3 2 7 7 H 1.08997 * 110.51347 * 241.21944 * 6 5 3 8 8 N 1.46500 * 110.51738 * 118.64360 * 6 5 3 9 9 C 1.39777 * 120.00640 * 155.00232 * 8 6 5 10 10 C 1.38943 * 120.00775 * 179.97438 * 9 8 6 11 11 C 1.38014 * 119.99201 * 180.27420 * 10 9 8 12 12 C 1.38893 * 120.00781 * 359.49312 * 11 10 9 13 13 O 1.35796 * 119.99971 * 180.23044 * 12 11 10 14 14 C 1.34809 * 117.00796 * 174.73829 * 13 12 11 15 15 H 1.08003 * 119.99228 * 5.05489 * 14 13 12 16 16 C 1.38622 * 120.00389 * 185.06077 * 14 13 12 17 17 N 1.31580 * 119.99604 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99945 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47316 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47232 * 119.99830 * 18 16 14 21 21 H 1.48498 * 109.47434 * 239.99936 * 18 16 14 22 22 C 1.38900 * 120.00876 * 0.51203 * 12 11 10 23 23 C 1.38006 * 120.00952 * 359.74188 * 22 12 11 24 24 C 1.54485 * 104.06145 * 359.97438 * 6 5 3 25 25 O 1.44425 * 104.80202 * 336.02122 * 24 6 5 26 26 H 1.08997 * 109.47300 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47147 * 300.00369 * 1 2 3 28 28 H 1.08998 * 109.47285 * 60.00033 * 1 2 3 29 29 H 1.09000 * 109.46800 * 239.99991 * 2 1 3 30 30 H 1.08998 * 109.47285 * 119.99967 * 2 1 3 31 31 H 1.09002 * 110.51446 * 24.15439 * 5 3 2 32 32 H 1.09008 * 110.62709 * 261.51214 * 5 3 2 33 33 H 0.97010 * 119.99654 * 334.99779 * 8 6 5 34 34 H 1.08000 * 120.00623 * 0.02562 * 10 9 8 35 35 H 1.08007 * 119.99317 * 179.72686 * 11 10 9 36 36 H 0.97008 * 119.99295 * 180.02562 * 17 16 14 37 37 H 1.08001 * 119.99548 * 179.76971 * 22 12 11 38 38 H 1.07997 * 120.00417 * 179.97438 * 23 22 12 39 39 H 1.08997 * 110.37109 * 94.85383 * 24 6 5 40 40 H 1.09001 * 110.37147 * 217.19046 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5831 2.0058 0.8135 5 6 3.5794 1.4686 0.1261 6 6 4.0108 2.6418 -0.7819 7 1 4.6543 2.2857 -1.5863 8 7 4.6945 3.6734 0.0021 9 6 5.6041 4.5346 -0.6182 10 6 6.2522 5.5133 0.1252 11 6 7.1460 6.3671 -0.4887 12 6 7.4056 6.2413 -1.8473 13 8 8.2886 7.0785 -2.4502 14 6 8.5776 6.8349 -3.7442 15 1 8.0530 6.0556 -4.2771 16 6 9.5482 7.5843 -4.3907 17 7 10.1877 8.5332 -3.7412 18 14 9.9490 7.2461 -6.1835 19 1 9.0964 6.1365 -6.6806 20 1 9.6897 8.4673 -6.9877 21 1 11.3792 6.8660 -6.3078 22 6 6.7578 5.2631 -2.5907 23 6 5.8600 4.4124 -1.9785 24 6 2.6809 3.1855 -1.3498 25 8 1.7634 2.0730 -1.2699 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0079 0.5319 -0.2307 32 1 3.8771 1.6549 1.1581 33 1 4.5159 3.7588 0.9517 34 1 6.0536 5.6085 1.1825 35 1 7.6465 7.1308 0.0883 36 1 10.8666 9.0579 -4.1938 37 1 6.9570 5.1679 -3.6479 38 1 5.3560 3.6521 -2.5567 39 1 2.3219 4.0178 -0.7445 40 1 2.8101 3.4970 -2.3864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688514524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:31 Heat of formation + Delta-G solvation = -48.243113 kcal Electronic energy + Delta-G solvation = -20796.773029 eV Core-core repulsion = 17577.062709 eV Total energy + Delta-G solvation = -3219.710320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.99243 -38.86974 -36.93947 -34.50255 -33.73949 -32.12742 -30.67741 -30.18803 -28.20615 -26.67987 -25.10913 -23.84727 -22.54017 -21.38126 -21.12397 -20.31455 -17.96018 -17.44522 -16.68665 -16.11921 -15.82865 -15.41005 -14.78237 -14.45304 -14.12953 -13.93577 -13.62910 -13.50469 -13.41155 -13.20747 -12.71195 -12.63492 -12.37654 -12.02660 -11.79784 -11.58195 -11.45770 -11.35171 -11.18229 -11.07008 -10.87964 -10.82970 -10.53557 -10.36206 -9.94746 -9.26315 -9.18323 -8.47317 -8.20154 -6.44859 -6.33829 -3.91012 2.17651 2.52965 3.17557 3.19049 3.24266 3.53160 3.95692 4.05251 4.34719 4.41850 4.64780 4.78914 4.85828 4.96924 5.05797 5.10289 5.19030 5.29199 5.39557 5.48396 5.55650 5.60306 5.64842 5.69064 5.73932 5.77268 5.83643 5.88890 6.02321 6.18803 6.25800 6.43161 6.67259 6.81396 6.95656 7.07371 7.32508 7.43446 7.58624 7.93236 8.10348 8.17778 9.12318 9.86249 10.84967 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034233 B = 0.003114 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.719244 B = 8989.327537 C = 9575.147923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.074 3.926 4 H 0.067 0.933 5 C -0.158 4.158 6 C 0.130 3.870 7 H 0.091 0.909 8 N -0.749 5.749 9 C 0.119 3.881 10 C -0.141 4.141 11 C -0.150 4.150 12 C 0.115 3.885 13 O -0.188 6.188 14 C -0.386 4.386 15 H 0.089 0.911 16 C 0.036 3.964 17 N -0.868 5.868 18 Si 0.938 3.062 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.191 4.191 23 C -0.143 4.143 24 C 0.028 3.972 25 O -0.371 6.371 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.391 0.609 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.267 0.733 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.773 -14.511 7.703 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C 0.016 3.984 4 H 0.085 0.915 5 C -0.197 4.197 6 C 0.022 3.978 7 H 0.109 0.891 8 N -0.385 5.385 9 C 0.021 3.979 10 C -0.163 4.163 11 C -0.170 4.170 12 C 0.062 3.938 13 O -0.093 6.093 14 C -0.463 4.463 15 H 0.106 0.894 16 C -0.167 4.167 17 N -0.505 5.505 18 Si 0.763 3.237 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.211 4.211 23 C -0.165 4.165 24 C -0.051 4.051 25 O -0.290 6.290 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.225 0.775 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.082 0.918 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.664 -14.310 7.407 21.787 hybrid contribution 0.299 -0.053 -0.450 0.543 sum -14.365 -14.363 6.957 21.472 Atomic orbital electron populations 1.21734 0.95316 1.01505 1.02279 1.21596 0.96699 0.94542 1.02726 1.23011 0.93776 0.94340 0.87247 0.91504 1.23251 0.96011 0.99402 1.01021 1.22020 0.93509 0.87727 0.94522 0.89133 1.44235 1.48010 1.36500 1.09782 1.17393 0.94634 0.93646 0.92178 1.20107 1.00460 0.97430 0.98306 1.20012 1.02296 1.02223 0.92436 1.19249 0.91793 0.90801 0.91919 1.83984 1.53105 1.46056 1.26117 1.21285 1.21000 1.19931 0.84110 0.89380 1.25225 0.95582 0.95870 1.00048 1.70063 1.23734 1.20045 1.36633 0.85690 0.78596 0.78465 0.80909 1.19239 1.20301 1.20299 1.21012 1.00732 0.98690 1.00677 1.20318 1.02023 1.01425 0.92745 1.24072 0.88787 0.89606 1.02606 1.89145 1.58794 1.44095 1.36919 0.92780 0.92921 0.91993 0.90985 0.90788 0.89868 0.90007 0.77476 0.87177 0.86425 0.92331 0.85504 0.87534 0.91788 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.85 37.16 0.37 -0.76 16 2 C -0.12 -0.90 5.56 -26.73 -0.15 -1.05 16 3 C 0.07 0.68 3.25 -25.96 -0.08 0.60 16 4 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.16 -1.42 6.39 -25.17 -0.16 -1.58 16 6 C 0.13 1.48 3.19 -66.36 -0.21 1.27 16 7 H 0.09 1.12 6.40 -51.93 -0.33 0.78 16 8 N -0.75 -9.56 5.26 -50.61 -0.27 -9.83 16 9 C 0.12 1.99 6.66 -83.71 -0.56 1.43 16 10 C -0.14 -2.48 9.89 -39.40 -0.39 -2.87 16 11 C -0.15 -3.16 9.98 -39.42 -0.39 -3.55 16 12 C 0.12 2.80 6.65 -39.09 -0.26 2.54 16 13 O -0.19 -5.44 9.75 -0.04 0.00 -5.44 16 14 C -0.39 -10.98 9.48 30.87 0.29 -10.68 16 15 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 16 C 0.04 1.00 5.49 -17.52 -0.10 0.90 16 17 N -0.87 -25.96 13.67 55.48 0.76 -25.20 16 18 Si 0.94 20.94 29.55 -169.99 -5.02 15.91 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 C -0.19 -4.17 9.16 -39.42 -0.36 -4.53 16 23 C -0.14 -2.62 9.21 -39.40 -0.36 -2.98 16 24 C 0.03 0.33 7.35 37.94 0.28 0.61 16 25 O -0.37 -4.41 11.13 -35.23 -0.39 -4.80 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.54 8.01 -51.93 -0.42 0.12 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 32 H 0.08 0.65 7.70 -51.92 -0.40 0.25 16 33 H 0.39 4.26 8.39 -40.82 -0.34 3.92 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 38 H 0.11 1.70 6.20 -52.49 -0.33 1.37 16 39 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -31.27 329.54 -7.77 -39.04 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.73 Total: 6.00 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.09 Total: -20.66 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.49 Total: -35.03 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.39 Total: -10.24 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.27 -7.77 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688514524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.198 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds