Wall clock time and date at job start Thu Apr 9 2020 15:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 H 1.08995 * 110.33587 * 52.74825 * 3 2 1 5 5 C 1.54475 * 110.37389 * 175.00502 * 3 2 1 6 6 C 1.54499 * 104.06842 * 142.80796 * 5 3 2 7 7 H 1.08997 * 110.51347 * 241.21944 * 6 5 3 8 8 N 1.46500 * 110.51738 * 118.64360 * 6 5 3 9 9 C 1.39777 * 120.00640 * 155.00232 * 8 6 5 10 10 C 1.38943 * 120.00775 * 179.97438 * 9 8 6 11 11 C 1.38014 * 119.99201 * 180.27420 * 10 9 8 12 12 C 1.38893 * 120.00781 * 359.49312 * 11 10 9 13 13 O 1.35796 * 119.99971 * 180.23044 * 12 11 10 14 14 C 1.34809 * 117.00796 * 174.73829 * 13 12 11 15 15 H 1.08003 * 119.99228 * 5.05489 * 14 13 12 16 16 C 1.38622 * 120.00389 * 185.06077 * 14 13 12 17 17 N 1.31580 * 119.99604 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99945 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47316 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47232 * 119.99830 * 18 16 14 21 21 H 1.48498 * 109.47434 * 239.99936 * 18 16 14 22 22 C 1.38900 * 120.00876 * 0.51203 * 12 11 10 23 23 C 1.38006 * 120.00952 * 359.74188 * 22 12 11 24 24 C 1.54485 * 104.06145 * 359.97438 * 6 5 3 25 25 O 1.44425 * 104.80202 * 336.02122 * 24 6 5 26 26 H 1.08997 * 109.47300 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47147 * 300.00369 * 1 2 3 28 28 H 1.08998 * 109.47285 * 60.00033 * 1 2 3 29 29 H 1.09000 * 109.46800 * 239.99991 * 2 1 3 30 30 H 1.08998 * 109.47285 * 119.99967 * 2 1 3 31 31 H 1.09002 * 110.51446 * 24.15439 * 5 3 2 32 32 H 1.09008 * 110.62709 * 261.51214 * 5 3 2 33 33 H 0.97010 * 119.99654 * 334.99779 * 8 6 5 34 34 H 1.08000 * 120.00623 * 0.02562 * 10 9 8 35 35 H 1.08007 * 119.99317 * 179.72686 * 11 10 9 36 36 H 0.97008 * 119.99295 * 180.02562 * 17 16 14 37 37 H 1.08001 * 119.99548 * 179.76971 * 22 12 11 38 38 H 1.07997 * 120.00417 * 179.97438 * 23 22 12 39 39 H 1.08997 * 110.37109 * 94.85383 * 24 6 5 40 40 H 1.09001 * 110.37147 * 217.19046 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5831 2.0058 0.8135 5 6 3.5794 1.4686 0.1261 6 6 4.0108 2.6418 -0.7819 7 1 4.6543 2.2857 -1.5863 8 7 4.6945 3.6734 0.0021 9 6 5.6041 4.5346 -0.6182 10 6 6.2522 5.5133 0.1252 11 6 7.1460 6.3671 -0.4887 12 6 7.4056 6.2413 -1.8473 13 8 8.2886 7.0785 -2.4502 14 6 8.5776 6.8349 -3.7442 15 1 8.0530 6.0556 -4.2771 16 6 9.5482 7.5843 -4.3907 17 7 10.1877 8.5332 -3.7412 18 14 9.9490 7.2461 -6.1835 19 1 9.0964 6.1365 -6.6806 20 1 9.6897 8.4673 -6.9877 21 1 11.3792 6.8660 -6.3078 22 6 6.7578 5.2631 -2.5907 23 6 5.8600 4.4124 -1.9785 24 6 2.6809 3.1855 -1.3498 25 8 1.7634 2.0730 -1.2699 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0079 0.5319 -0.2307 32 1 3.8771 1.6549 1.1581 33 1 4.5159 3.7588 0.9517 34 1 6.0536 5.6085 1.1825 35 1 7.6465 7.1308 0.0883 36 1 10.8666 9.0579 -4.1938 37 1 6.9570 5.1679 -3.6479 38 1 5.3560 3.6521 -2.5567 39 1 2.3219 4.0178 -0.7445 40 1 2.8101 3.4970 -2.3864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688514524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:31 Heat of formation + Delta-G solvation = -68.522160 kcal Electronic energy + Delta-G solvation = -20797.652395 eV Core-core repulsion = 17577.062709 eV Total energy + Delta-G solvation = -3220.589685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04058 -40.38988 -38.53918 -35.78485 -34.45592 -34.10722 -31.90666 -31.64585 -29.17080 -28.08851 -27.04184 -24.59611 -23.96271 -22.72949 -21.97801 -21.49218 -19.82513 -19.03979 -17.80985 -17.47622 -16.65644 -16.50555 -16.23163 -16.03653 -15.51081 -15.34163 -15.07986 -14.70862 -14.41611 -14.31793 -14.03479 -13.86615 -13.57839 -13.45061 -13.15337 -12.87924 -12.73428 -12.54545 -12.38466 -12.26527 -12.08224 -11.84023 -11.75560 -11.55813 -11.07977 -10.95265 -10.74665 -10.18434 -9.78179 -8.39970 -7.96769 -6.03544 0.58377 0.91490 1.36703 1.45272 1.54661 2.22138 2.48504 2.90253 3.07661 3.24186 3.56828 3.67726 3.69995 3.97143 4.06539 4.15932 4.21538 4.23475 4.31381 4.45328 4.57092 4.57993 4.70501 4.77346 4.79355 4.87167 4.95569 5.00881 5.09637 5.11599 5.12351 5.23836 5.25729 5.44125 5.49928 5.54617 5.77970 5.85461 5.99264 6.11107 6.57303 7.01498 7.06335 7.92809 8.84701 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034233 B = 0.003114 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.719244 B = 8989.327537 C = 9575.147923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.074 0.926 5 C -0.149 4.149 6 C 0.125 3.875 7 H 0.085 0.915 8 N -0.732 5.732 9 C 0.150 3.850 10 C -0.137 4.137 11 C -0.155 4.155 12 C 0.063 3.937 13 O -0.242 6.242 14 C -0.405 4.405 15 H 0.097 0.903 16 C -0.029 4.029 17 N -0.926 5.926 18 Si 1.016 2.984 19 H -0.253 1.253 20 H -0.270 1.270 21 H -0.270 1.270 22 C -0.195 4.195 23 C -0.148 4.148 24 C 0.030 3.970 25 O -0.388 6.388 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.407 0.593 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.270 0.730 37 H 0.116 0.884 38 H 0.133 0.867 39 H 0.062 0.938 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.674 -17.218 8.766 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.092 0.908 5 C -0.187 4.187 6 C 0.018 3.982 7 H 0.103 0.897 8 N -0.368 5.368 9 C 0.050 3.950 10 C -0.159 4.159 11 C -0.175 4.175 12 C 0.014 3.986 13 O -0.150 6.150 14 C -0.481 4.481 15 H 0.115 0.885 16 C -0.225 4.225 17 N -0.566 5.566 18 Si 0.836 3.164 19 H -0.176 1.176 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.215 4.215 23 C -0.170 4.170 24 C -0.049 4.049 25 O -0.307 6.307 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.243 0.757 34 H 0.168 0.832 35 H 0.133 0.867 36 H 0.079 0.921 37 H 0.134 0.866 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.641 -17.081 8.526 25.325 hybrid contribution 0.595 0.572 -0.521 0.976 sum -16.045 -16.509 8.006 24.374 Atomic orbital electron populations 1.21730 0.95360 1.02082 1.01670 1.21630 0.96673 0.93652 1.03481 1.23213 0.94086 0.95133 0.86327 0.90769 1.23222 0.95645 0.98467 1.01390 1.22144 0.93034 0.88079 0.94939 0.89722 1.44272 1.46346 1.35510 1.10639 1.17504 0.93255 0.92667 0.91590 1.20439 0.99003 0.96270 1.00158 1.20257 1.02930 1.02886 0.91412 1.19766 0.93001 0.92364 0.93486 1.83931 1.55777 1.48722 1.26571 1.21774 1.21394 1.20290 0.84670 0.88525 1.26519 0.95184 0.95473 1.05313 1.70212 1.25282 1.22008 1.39099 0.84554 0.78656 0.78870 0.74282 1.17597 1.19502 1.19479 1.21043 1.01341 0.98879 1.00251 1.20519 1.01395 1.01314 0.93818 1.23980 0.88934 0.89753 1.02240 1.89149 1.58910 1.44173 1.38474 0.91682 0.92351 0.93762 0.91526 0.88696 0.88916 0.88241 0.75660 0.83204 0.86686 0.92144 0.86619 0.84972 0.91951 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.85 71.98 0.71 -1.18 16 2 C -0.12 -1.42 5.56 30.59 0.17 -1.25 16 3 C 0.07 1.04 3.25 31.10 0.10 1.15 16 4 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 5 C -0.15 -2.04 6.39 31.61 0.20 -1.84 16 6 C 0.12 2.39 3.19 46.01 0.15 2.54 16 7 H 0.08 1.80 6.40 -2.39 -0.02 1.78 16 8 N -0.73 -15.60 5.26 -314.03 -1.65 -17.25 16 9 C 0.15 4.56 6.66 38.21 0.25 4.82 16 10 C -0.14 -4.45 9.89 22.39 0.22 -4.23 16 11 C -0.16 -6.59 9.98 22.37 0.22 -6.37 16 12 C 0.06 3.21 6.65 22.59 0.15 3.36 16 13 O -0.24 -14.91 9.75 -23.04 -0.22 -15.13 16 14 C -0.40 -24.16 9.48 67.91 0.64 -23.52 16 15 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 16 C -0.03 -1.68 5.49 84.82 0.47 -1.21 16 17 N -0.93 -58.26 13.67 21.61 0.30 -57.96 16 18 Si 1.02 44.10 29.55 68.60 2.03 46.13 16 19 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 22 C -0.20 -8.66 9.16 22.37 0.20 -8.46 16 23 C -0.15 -5.17 9.21 22.39 0.21 -4.96 16 24 C 0.03 0.62 7.35 72.49 0.53 1.15 16 25 O -0.39 -8.31 11.13 -148.98 -1.66 -9.97 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.04 0.70 8.01 -2.39 -0.02 0.68 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.16 7.87 -2.39 -0.02 1.14 16 32 H 0.10 1.06 7.70 -2.38 -0.02 1.04 16 33 H 0.41 6.74 8.39 -92.70 -0.78 5.96 16 34 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 36 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 37 H 0.12 5.27 5.63 -2.91 -0.02 5.25 16 38 H 0.13 3.90 6.20 -2.91 -0.02 3.88 16 39 H 0.06 1.32 8.06 -2.39 -0.02 1.30 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -72.59 329.54 3.29 -69.30 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.27 Total: 24.88 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 4.23 Total: -39.99 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -1.36 Total: -75.21 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.88 Total: -25.10 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -72.59 3.29 -69.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688514524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.777 kcal (2) G-P(sol) polarization free energy of solvation -72.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds