Wall clock time and date at job start Thu Apr 9 2020 15:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00127 * 2 1 4 4 H 1.48496 * 109.47039 * 240.00492 * 3 2 1 5 5 H 1.48504 * 109.46857 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47062 * 120.00155 * 3 2 1 7 7 C 1.37883 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99556 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99871 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00141 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47393 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47140 * 65.00103 * 12 11 10 14 14 C 1.39970 * 120.00495 * 179.97438 * 13 12 11 15 15 C 1.38569 * 119.95014 * 359.97438 * 14 13 12 16 16 C 1.38220 * 119.87386 * 179.97438 * 15 14 13 17 17 C 1.38108 * 120.03538 * 0.08423 * 16 15 14 18 18 C 1.38642 * 120.45421 * 0.02562 * 17 16 15 19 19 C 1.38159 * 119.87536 * 359.85243 * 18 17 16 20 20 O 1.35950 * 121.83750 * 180.27213 * 19 18 17 21 21 C 1.42836 * 117.86254 * 342.78526 * 20 19 18 22 22 C 1.53412 * 108.38732 * 49.09835 * 21 20 19 23 23 C 1.50784 * 118.72076 * 179.58731 * 18 17 16 24 24 H 0.97001 * 120.00472 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47358 * 60.00182 * 9 7 2 26 26 H 1.09007 * 109.47118 * 300.00454 * 9 7 2 27 27 H 1.09007 * 109.46612 * 60.00479 * 11 10 9 28 28 H 1.08998 * 109.47331 * 300.00593 * 11 10 9 29 29 H 1.09003 * 109.47385 * 305.00652 * 12 11 10 30 30 H 1.09000 * 109.47474 * 185.00387 * 12 11 10 31 31 H 0.97009 * 120.00059 * 0.02562 * 13 12 11 32 32 H 1.08000 * 120.06510 * 0.02562 * 15 14 13 33 33 H 1.07998 * 119.98359 * 180.02562 * 16 15 14 34 34 H 1.08003 * 119.77310 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.68903 * 168.83532 * 21 20 19 36 36 H 1.09002 * 109.68683 * 289.36502 * 21 20 19 37 37 H 1.08995 * 109.69748 * 55.05264 * 22 21 20 38 38 H 1.09000 * 109.69635 * 175.65015 * 22 21 20 39 39 H 1.09004 * 109.43253 * 282.44353 * 23 18 17 40 40 H 1.08998 * 109.43143 * 42.35528 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 7 3.4068 -5.8879 1.2506 14 6 4.4570 -6.7838 1.4820 15 6 4.7778 -7.7354 0.5271 16 6 5.8155 -8.6189 0.7571 17 6 6.5299 -8.5541 1.9373 18 6 6.2140 -7.6066 2.8988 19 6 5.1798 -6.7181 2.6757 20 8 4.8396 -5.7697 3.5885 21 6 5.3085 -5.9336 4.9277 22 6 6.8124 -6.2327 4.8807 23 6 7.0133 -7.5769 4.1770 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8897 27 1 0.9447 -4.9827 -0.8898 28 1 0.9451 -4.9822 0.8902 29 1 3.3210 -5.7957 -0.8429 30 1 2.1819 -6.9375 -0.0898 31 1 3.1810 -5.2222 1.9191 32 1 4.2185 -7.7860 -0.3954 33 1 6.0673 -9.3610 0.0139 34 1 7.3402 -9.2464 2.1124 35 1 5.1336 -5.0179 5.4926 36 1 4.7837 -6.7632 5.4016 37 1 7.3259 -5.4477 4.3256 38 1 7.2083 -6.2855 5.8949 39 1 6.6800 -8.3819 4.8319 40 1 8.0703 -7.7106 3.9468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689561769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:34 Heat of formation + Delta-G solvation = -70.381469 kcal Electronic energy + Delta-G solvation = -21009.766182 eV Core-core repulsion = 17789.095871 eV Total energy + Delta-G solvation = -3220.670311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59279 -37.85082 -36.95084 -35.46955 -33.59509 -32.66454 -30.58277 -30.10237 -27.65344 -26.56375 -25.69258 -23.83621 -22.45625 -22.12436 -21.35606 -19.70021 -17.71714 -17.20679 -16.40679 -16.21275 -15.77091 -15.33910 -15.00774 -14.79084 -14.47694 -14.14806 -14.06929 -13.71253 -13.51554 -13.27199 -13.06688 -12.89790 -12.29398 -11.84166 -11.77818 -11.61591 -11.32149 -10.98272 -10.86686 -10.80440 -10.75879 -10.63994 -10.45935 -10.04934 -9.76726 -9.14188 -8.87400 -8.25586 -8.21760 -6.95772 -6.12182 -4.14005 1.48175 1.72576 3.32252 3.34577 3.35821 3.38928 3.74295 3.92264 4.33304 4.56612 4.62606 4.72045 4.79976 5.01838 5.10381 5.23421 5.24366 5.30932 5.37297 5.41196 5.46327 5.58232 5.60018 5.67988 5.83224 5.91749 5.95714 6.00302 6.01933 6.20547 6.25741 6.50206 6.70522 6.90113 7.04927 7.30484 7.38876 7.74572 7.78091 8.09634 8.12643 8.52692 8.98618 9.50902 10.99299 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.003757 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.543662 B = 7451.593720 C = 8344.357055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.392 6.392 11 C 0.050 3.950 12 C 0.130 3.870 13 N -0.729 5.729 14 C 0.210 3.790 15 C -0.185 4.185 16 C -0.098 4.098 17 C -0.158 4.158 18 C -0.118 4.118 19 C 0.054 3.946 20 O -0.316 6.316 21 C 0.065 3.935 22 C -0.160 4.160 23 C -0.075 4.075 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.005 0.995 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.411 0.589 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.990 -17.999 7.375 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.312 6.312 11 C -0.028 4.028 12 C 0.006 3.994 13 N -0.358 5.358 14 C 0.104 3.896 15 C -0.209 4.209 16 C -0.117 4.117 17 C -0.179 4.179 18 C -0.120 4.120 19 C 0.006 3.994 20 O -0.230 6.230 21 C -0.011 4.011 22 C -0.198 4.198 23 C -0.112 4.112 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.248 0.752 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.784 -17.665 7.159 21.900 hybrid contribution 0.077 0.972 0.313 1.024 sum 10.862 -16.692 7.472 21.271 Atomic orbital electron populations 1.69948 1.06110 1.27307 1.50468 1.24940 0.94970 0.99427 0.95072 0.86388 0.79313 0.81855 0.78892 1.19986 1.21132 1.19995 1.21016 0.94053 0.89337 1.50985 0.91591 1.20213 0.88713 0.83540 0.95411 1.87911 1.35377 1.12724 1.95192 1.22463 0.94289 0.85923 1.00131 1.21393 0.93639 0.97260 0.87104 1.44639 1.33904 1.36572 1.20732 1.17451 0.88650 0.91448 0.92051 1.20432 1.02211 0.98659 0.99574 1.20693 0.95488 0.98570 0.96928 1.20527 1.02328 1.00434 0.94563 1.19495 0.96714 0.97940 0.97824 1.18093 0.96854 0.93855 0.90565 1.85981 1.73143 1.45167 1.18713 1.22870 0.93725 1.02679 0.81794 1.22229 0.97307 0.98422 1.01819 1.20441 0.99729 0.97417 0.93662 0.92578 0.97654 0.97686 0.92892 0.93886 0.91679 0.91745 0.75249 0.85656 0.86356 0.86696 0.87759 0.92317 0.90391 0.90115 0.90737 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.34 9.43 -34.44 -0.32 -15.67 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.20 5.37 5.69 36.00 0.20 5.57 16 10 O -0.39 -9.43 10.27 -35.23 -0.36 -9.79 16 11 C 0.05 0.90 6.07 37.15 0.23 1.13 16 12 C 0.13 1.99 5.30 -4.05 -0.02 1.96 16 13 N -0.73 -11.99 5.67 -58.43 -0.33 -12.32 16 14 C 0.21 3.25 6.67 -83.47 -0.56 2.70 16 15 C -0.19 -2.50 9.30 -39.47 -0.37 -2.87 16 16 C -0.10 -1.16 10.04 -39.64 -0.40 -1.56 16 17 C -0.16 -1.85 9.66 -39.48 -0.38 -2.23 16 18 C -0.12 -1.50 5.75 -104.46 -0.60 -2.10 16 19 C 0.05 0.82 6.49 -39.07 -0.25 0.56 16 20 O -0.32 -4.76 9.42 -19.58 -0.18 -4.95 16 21 C 0.06 0.70 7.03 37.37 0.26 0.96 16 22 C -0.16 -1.48 6.19 -26.49 -0.16 -1.64 16 23 C -0.08 -0.72 5.86 -27.81 -0.16 -0.88 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 27 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 30 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 31 H 0.41 7.37 7.74 -40.82 -0.32 7.05 16 32 H 0.13 1.52 6.72 -52.49 -0.35 1.17 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.11 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -32.46 332.45 -8.90 -41.36 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.11 Total: 2.41 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -2.64 Total: -12.50 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.41 Total: -38.59 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.55 Total: -14.73 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.46 -8.90 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689561769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.021 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds