Wall clock time and date at job start Thu Apr 9 2020 15:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00127 * 2 1 4 4 H 1.48496 * 109.47039 * 240.00492 * 3 2 1 5 5 H 1.48504 * 109.46857 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47062 * 120.00155 * 3 2 1 7 7 C 1.37883 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99556 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99871 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00141 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47393 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47140 * 65.00103 * 12 11 10 14 14 C 1.39970 * 120.00495 * 179.97438 * 13 12 11 15 15 C 1.38569 * 119.95014 * 359.97438 * 14 13 12 16 16 C 1.38220 * 119.87386 * 179.97438 * 15 14 13 17 17 C 1.38108 * 120.03538 * 0.08423 * 16 15 14 18 18 C 1.38642 * 120.45421 * 0.02562 * 17 16 15 19 19 C 1.38159 * 119.87536 * 359.85243 * 18 17 16 20 20 O 1.35950 * 121.83750 * 180.27213 * 19 18 17 21 21 C 1.42836 * 117.86254 * 342.78526 * 20 19 18 22 22 C 1.53412 * 108.38732 * 49.09835 * 21 20 19 23 23 C 1.50784 * 118.72076 * 179.58731 * 18 17 16 24 24 H 0.97001 * 120.00472 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47358 * 60.00182 * 9 7 2 26 26 H 1.09007 * 109.47118 * 300.00454 * 9 7 2 27 27 H 1.09007 * 109.46612 * 60.00479 * 11 10 9 28 28 H 1.08998 * 109.47331 * 300.00593 * 11 10 9 29 29 H 1.09003 * 109.47385 * 305.00652 * 12 11 10 30 30 H 1.09000 * 109.47474 * 185.00387 * 12 11 10 31 31 H 0.97009 * 120.00059 * 0.02562 * 13 12 11 32 32 H 1.08000 * 120.06510 * 0.02562 * 15 14 13 33 33 H 1.07998 * 119.98359 * 180.02562 * 16 15 14 34 34 H 1.08003 * 119.77310 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.68903 * 168.83532 * 21 20 19 36 36 H 1.09002 * 109.68683 * 289.36502 * 21 20 19 37 37 H 1.08995 * 109.69748 * 55.05264 * 22 21 20 38 38 H 1.09000 * 109.69635 * 175.65015 * 22 21 20 39 39 H 1.09004 * 109.43253 * 282.44353 * 23 18 17 40 40 H 1.08998 * 109.43143 * 42.35528 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 7 3.4068 -5.8879 1.2506 14 6 4.4570 -6.7838 1.4820 15 6 4.7778 -7.7354 0.5271 16 6 5.8155 -8.6189 0.7571 17 6 6.5299 -8.5541 1.9373 18 6 6.2140 -7.6066 2.8988 19 6 5.1798 -6.7181 2.6757 20 8 4.8396 -5.7697 3.5885 21 6 5.3085 -5.9336 4.9277 22 6 6.8124 -6.2327 4.8807 23 6 7.0133 -7.5769 4.1770 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8897 27 1 0.9447 -4.9827 -0.8898 28 1 0.9451 -4.9822 0.8902 29 1 3.3210 -5.7957 -0.8429 30 1 2.1819 -6.9375 -0.0898 31 1 3.1810 -5.2222 1.9191 32 1 4.2185 -7.7860 -0.3954 33 1 6.0673 -9.3610 0.0139 34 1 7.3402 -9.2464 2.1124 35 1 5.1336 -5.0179 5.4926 36 1 4.7837 -6.7632 5.4016 37 1 7.3259 -5.4477 4.3256 38 1 7.2083 -6.2855 5.8949 39 1 6.6800 -8.3819 4.8319 40 1 8.0703 -7.7106 3.9468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689561769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:34 Heat of formation + Delta-G solvation = -91.163615 kcal Electronic energy + Delta-G solvation = -21010.667363 eV Core-core repulsion = 17789.095871 eV Total energy + Delta-G solvation = -3221.571493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54626 -39.13375 -38.37699 -36.66861 -35.02007 -34.39307 -31.58140 -31.31392 -29.39847 -28.10658 -26.55442 -24.84587 -24.50816 -23.44700 -22.38317 -20.60606 -18.87387 -18.53852 -18.15462 -17.56985 -17.30342 -16.53496 -16.47333 -16.12596 -15.86633 -15.34433 -15.03652 -14.91597 -14.78505 -14.51915 -14.24054 -13.96263 -13.74584 -13.28985 -13.12067 -12.92136 -12.71438 -12.62524 -12.45184 -12.28237 -11.94196 -11.81135 -11.57470 -11.35402 -11.33510 -10.92012 -10.80016 -10.29330 -9.21259 -8.35105 -8.06271 -6.47631 0.51068 0.73104 1.37595 1.42250 1.50779 2.31848 2.37865 2.65711 2.94852 2.98693 3.12218 3.78665 3.82688 3.95321 4.03461 4.15020 4.18791 4.32334 4.36511 4.49477 4.52382 4.57711 4.65841 4.69173 4.75523 4.76607 4.88694 4.94184 4.98337 5.13965 5.14527 5.19019 5.29577 5.51074 5.57626 5.74854 5.92305 5.98921 6.25538 6.48591 6.67737 6.77596 6.86368 7.24223 8.76946 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.003757 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.543662 B = 7451.593720 C = 8344.357055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.552 4.552 8 H 0.058 0.942 9 C 0.210 3.790 10 O -0.408 6.408 11 C 0.043 3.957 12 C 0.141 3.859 13 N -0.744 5.744 14 C 0.177 3.823 15 C -0.193 4.193 16 C -0.100 4.100 17 C -0.156 4.156 18 C -0.126 4.126 19 C 0.029 3.971 20 O -0.346 6.346 21 C 0.053 3.947 22 C -0.155 4.155 23 C -0.075 4.075 24 H 0.272 0.728 25 H -0.010 1.010 26 H -0.014 1.014 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.819 -18.994 7.753 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.135 3.865 10 O -0.328 6.328 11 C -0.034 4.034 12 C 0.018 3.982 13 N -0.374 5.374 14 C 0.074 3.926 15 C -0.216 4.216 16 C -0.118 4.118 17 C -0.176 4.176 18 C -0.127 4.127 19 C -0.019 4.019 20 O -0.262 6.262 21 C -0.022 4.022 22 C -0.192 4.192 23 C -0.112 4.112 24 H 0.081 0.919 25 H 0.008 0.992 26 H 0.004 0.996 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.232 0.768 32 H 0.153 0.847 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.631 -18.709 7.534 23.798 hybrid contribution -0.478 1.152 0.229 1.268 sum 12.152 -17.557 7.763 22.720 Atomic orbital electron populations 1.70048 1.07681 1.28789 1.50281 1.25928 0.95959 1.03277 0.93791 0.85260 0.78156 0.76837 0.79324 1.19034 1.19678 1.19214 1.21345 0.93961 0.91028 1.52605 0.92409 1.19824 0.88528 0.84510 0.93632 1.87863 1.35432 1.14255 1.95250 1.22783 0.95701 0.84000 1.00934 1.21358 0.92738 0.97367 0.86785 1.44646 1.35016 1.37074 1.20642 1.17818 0.89194 0.92301 0.93309 1.20695 1.02876 0.98490 0.99531 1.21082 0.94581 0.98474 0.97711 1.20957 1.02542 1.00149 0.93978 1.19954 0.96136 0.97223 0.99422 1.18428 0.97974 0.94740 0.90764 1.85932 1.74021 1.45908 1.20319 1.23156 0.95118 1.03614 0.80262 1.22211 0.95832 0.97865 1.03305 1.20552 1.00195 0.97970 0.92494 0.91938 0.99229 0.99598 0.91395 0.93626 0.92078 0.88478 0.76763 0.84723 0.83472 0.83771 0.86930 0.91407 0.91985 0.87103 0.88979 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 2 C 0.01 0.54 5.46 84.66 0.46 1.00 16 3 Si 0.98 45.17 29.54 68.60 2.03 47.19 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -33.70 9.43 25.60 0.24 -33.45 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 12.01 5.69 71.23 0.41 12.42 16 10 O -0.41 -20.35 10.27 -148.98 -1.53 -21.88 16 11 C 0.04 1.59 6.07 71.98 0.44 2.03 16 12 C 0.14 4.32 5.30 86.38 0.46 4.78 16 13 N -0.74 -25.28 5.67 -338.79 -1.92 -27.20 16 14 C 0.18 5.58 6.67 38.27 0.26 5.84 16 15 C -0.19 -5.03 9.30 22.34 0.21 -4.83 16 16 C -0.10 -2.14 10.04 22.23 0.22 -1.92 16 17 C -0.16 -3.25 9.66 22.34 0.22 -3.03 16 18 C -0.13 -3.02 5.75 -19.76 -0.11 -3.13 16 19 C 0.03 0.87 6.49 22.60 0.15 1.02 16 20 O -0.35 -10.83 9.42 -92.98 -0.88 -11.70 16 21 C 0.05 1.13 7.03 72.12 0.51 1.64 16 22 C -0.15 -2.61 6.19 30.75 0.19 -2.42 16 23 C -0.08 -1.25 5.86 29.89 0.18 -1.08 16 24 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 27 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.90 7.95 -2.39 -0.02 1.88 16 30 H 0.10 2.32 7.94 -2.39 -0.02 2.30 16 31 H 0.40 15.17 7.74 -92.70 -0.72 14.45 16 32 H 0.13 3.11 6.72 -2.91 -0.02 3.09 16 33 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.70 332.45 2.11 -69.59 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.31 Total: 21.24 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.81 Total: -21.14 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -1.64 Total: -83.30 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -2.41 Total: -33.58 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -71.70 2.11 -69.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689561769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.576 kcal (2) G-P(sol) polarization free energy of solvation -71.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds